MSTRG.13780.1.p1 (mRNA) -

Overview
NameMSTRG.13780.1.p1
Unique NameMSTRG.13780.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:1094070..1098299+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13780.1.p1 ID=MSTRG.13780.1.p1|Name=MSTRG.13780.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4230bp|location=Sequence derived from alignment at sc0000111_pilon:1094070..1098299+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCCTTCCTTAAGTGGTGTGACGTGAAAAGTTTTTATAGCATGATGACTT
ACTTGTTAACAAGAAAAATTTACAACTAAATGAAGTGcgatttttgtttg
gtttgaaaTTTCAACGATTTTTGTGGAATAAAAATGGATTGGATGAGAAC
TTTTGTCAGTTTCTTCCTTTTGTTAGGTATGTTGATGTTTGAAATTGTAG
GAAATCAAATCTGACCTAAACCTTGATGAGCGTAGTCTGATTCCGACCAG
GCTCAAACTactgggtcaagctggagtttttacaaggttttcgatgattc
ggttggtcgttgaatcttgagacaaaggattttattgctttttctaaaga
atgcgtcatctctattatttcaaatgaccaattagtgaagtatcttataa
aaactccagctcatcccaaactACCGCAATATCAAGATACCGCCATATTT
ATCTCTGGTTTAAACGGCCCCCTTTTCGCTCTGCCTATTCGAATTGTATA
TTGAAGCCAGTAGAAAGTTCAAAAGTCGATGTAATAACTTCTTTTAACCT
TTTCAAGCTAAGATGCTCACttttgcctactctaacaacTAGTAAAGGCA
ATACAGAAAGTTTAAACTAGAGCTTGTCGTTTTAGGCGCTTTTTCGGATT
CCTCCACTTTTGAATTTGCTGTTACGGGTCACACCCTCCTTATAACGAAT
TTGATTCATCGCAGTCAGGTTTATCAAAAATCTGTTGATaacgatcattt
tcagtggATTTATCCGAATGCAGAGTTTTCGTTATGAAGTCGTAAGATTT
CTTGGATAACGAAACGAAGTCTCAAAGTTTACAGATGGTGTCTACAAGTt
ttctatatatatatatcgaGTAATTCTCGAGGTCAACAATACTCTGATGA
TCAAGACTTTTGTCCCTTTACCCCTTTTATACTCAACATTCTTCTATATA
CAAACTTTCATCATCCAATCTTCCTGTGTCCAGGTATCATCCAAGAAGTC
ACAGCGAGCGATCCATACATCTCTATACAACTTCAAACAAcgtggaagaa
attttgtctaACTTTGGGAATTTTTAGAAATGAGTTGTCGAAACTTACGG
AGATAAAAGTCAACTTGATAGTGGTCATCAACGCGGACCAAAACTGTTTG
GATGGTGGAGATAAAGACAAAAAGGTTGAATTCGCTTCTTACTAACTATA
CTCTCTGAGATcaaatggctctattgtttgagaacaatatgatactaagc
ataatgcgagcctgatatagggctAGACActtaattataaaaaaacatgt
agcgaGTTTATTGTTCTGAATCTTTTGGGGGGTCCATCGATTATACAAAA
TGCATTTAAATAAACACTTTACGTAAAAGTTCACGTCGTATCTTTTCCAC
ATCTCTACAGGTATTTGCTTACGTTAACGTTATGCGGGATGACGGGACAA
CGGAAGTCAGTTCTGAAGACACCATAAAAGTCAGAGACGCGATCGAACGG
AGAAAGACAATCGCAAGTTTCAAGGTCAGAATGAATTCaattaccttatt
ggtatatattttcgcgtgttacaaattttcgcgaatcgcgaatttttttc
gaaaaaacgtgtttcgcgtgtattaaatttcgcgattgccgacttctgga
aaattttcgcgtgtattaaatttcgcgattcactaaactacgtattttca
gaaagtgggaatataaagcaagaaaaagactgattttgcttgaaacacaa
cgtttttgatgtaaaaatactaacaaaatactaagaaaaaatttttcgcg
tgtatttaatttcgcgattttgtaattttgaaaaagttaaacagtattaa
atttcgcgaaaattgaccaaaaaactcgcgaaattaagtacccgcgcaaa
tttgtaacacgcgaaaatatataccaataaggtatttgCGAGTTATTAAA
AGACTGAAAAGGCTGTCTTGAGACCATTGACGTGTCTACAAGTGGTCTCC
TCCCAAAATCAATAAAAGAACCTGACTAAGTGACTGACAAGGtaaattaa
atccccgctaacatggtgtcagcccccccccagaaatctgaagggcacct
aggccaggttagtagaggggggctaatgccttgcaattctttggggttac
ctattcattaagggtacctagctgtcttgatggaggctctgggggctggt
tatattttccaaatcgaatatttcaaaatatttcaaattattgaattttt
taattgaaattttttactgatgcaagttacccgatctaaCGGTAGCATAG
AGAAGCTAAAACCTCAGGATAAGAGTATGCAAACATGGATAGCTAGTTGT
GTTTTTGGCTCTGTTTAACCGTTTAACACTCACACTCATAACTGATTACA
ATCTTCTGGtatacaaaagaacaaaaagtgtcaattcaaaaaaatttctt
ttggctgaatgggggtacctaactcaaatcAATTTCTCAAGGGAACCTAA
ATtgctgggggcaccatgctcaatgggggcacctaaaaagtgggctgaaa
ccatggcTAAAAATGCAGATTAATTCGCACTTTTGAATACATAGACTTGT
ATGAGTTTCTTTCTTGAAACGCTTTAGGTTGTCAGTGTGAATGCGCACAA
CGTAGCTTCCAAAGCTTTCCATTTCACAGAAGGAACTATTCTCCTTATCA
TCGGCATTGTATTGGGAATCTATTTGATTGGTTATTTCCTAATCGTAAGT
TCACTTGATTGGTTATTTCCTAATCGTAAGTTCACTTGATTGGTTATTTC
CTAATCGTAAGTTCACTTGATTGGCTACTTCCCAAACCCTTACCAAGCCC
CTTGATCACTGTCTTACGGTTCTGATAGCATTTAACAATAGACTTAAAAA
CTCTAACCTCTATAAATCGAAAGCTGAAAATGCCTTATAAGAGAATAGAG
AAGAAAAGCGGACCCTCTGATATAATCGGACCGGGCCGTATCCCGGGATA
GATTCCTACCCCTATGTAGGGAAATTacagcgcttaccagacattgtact
ctgtgttcgcgacacatcagagccgtgctgtatcgatgatgatactTGCA
TAATACGGGAGAATCTTTCTCGTAGATATTGAACATATGAGTaccatcac
cacaccacattcaatgtccggcatatctccccatactcttgCATCAGAAT
GATGGTACCCTTTTCCCCTCACATATTATGGGTTGACCTTgcaaggtaca
ttcacttgccaagtgaatcatagCACCAGTGGGACTCGAACCCTGACCTT
CAGCACGGAAGAAGaacgataaccactacactactgcgcctatgccttat
aaaccttactcttaCTCGAAATCcccttaactcgaaaaaatttGTGGCAA
TAAAAATAACGCCGCGAGAAGGTCAGGAGCTGGCAAAGATTGGAGTTTTT
TCGAGCACTATAGAAAATATAAGCTTTTTATTATTTCCATTTCAGCTTGG
CGTTCAATCATACAGTTCAAGTGATCCGAAAGACAAACCTCTATCGTTCA
TTTTGGCCgctgaaaataaacatttcgTAGATGGGATCAAAAGACACAAG
TCTACGCAATTCAACTTCTCAAGAGTTTCAAACAAGAAAGTCCATATTAT
AGAAGACGTCCCTGCATCGTGATGGAATAAAATGCATTTGGAGAAAACTA
GTCTATTCCGGGAAAATCGTTTCCGGAGTCTGTCTGATCCGCTGAATCAA
AGTTCTGCAAATGTTAATACTGTTTTggttaggctgcacgcatcccctct
gatatgctTTGATATATGGGAAATGCTCGTCGTGTATAATagtcccgtcc
gagagttacccccgcCTTTATGTTTTAGAGCTTGAGAAGCTTGAGtagct
tgattagtaagttttaaCGAGAaagctttaaatttcattaaatttgaagg
GCTAGAGGTTCTTaacctttttaagaaaattgaaactggTTGTCCAAAAT
TTGATATACGATGAGCGTCCTCTGTATATCAAAGCCTATCAGAGATGACA
CGTGCAGCCTATATTTTGGTTGAACTTTTGGGAGCCAATCGTTGATTGAT
CACGTCAAAATGTGCTGACAAGATCTTTTTTGTTGGGATTTTGTTTTACA
CTCGAATACTCATGAACATTTATGCTGAGATGTTTAGAGACGATTTATCg
cccatcaaaatttcaataaataagataaaa

Coding sequence (CDS) from alignment at sc0000111_pilon:1094070..1098299+

>MSTRG.13780.1.p1 ID=MSTRG.13780.1.p1|Name=MSTRG.13780.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3210bp|location=Sequence derived from alignment at sc0000111_pilon:1094070..1098299+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTGGATGAGAACTTTTGTCAGTTTCTTCCTTTTGTTAGGTATCAT
CCAAGAAGTCACAGCGAGCGATCCATACATCTCTATACAACTTCAAACAA
cgtggaagaaattttgtctaACTTTGGGAATTTTTAGAAATGAGTTGTCG
AAACTTACGGAGATAAAAGTCAACTTGATAGTGGTCATCAACGCGGACCA
AAACTGTTTGGATGGTGGAGATAAAGACAAAAAGGTATTTGCTTACGTTA
ACGTTATGCGGGATGACGGGACAACGGAAGTCAGTTCTGAAGACACCATA
AAAGTCAGAGACGCGATCGAACGGAGAAAGACAATCGCAAGTTTCAAGGT
TGTCAGTGTGAATGCGCACAACGTAGCTTCCAAAGCTTTCCATTTCACAG
AAGGAACTATTCTCCTTATCATCGGCATTGTATTGGGAATCTATTTGATT
GGTTATTTCCTAATCCTTGGCGTTCAATCATACAGTTCAAGTGATCCGAA
AGACAAACCTCTATCGTTCATTTTGGCCgctgaaaataaacatttcgTAG
ATGGGATCAAAAGACACAAGTCTACGCAATTCAACTTCTCAAGAGTTTCA
AACAAGAAAGTCCATATTATAGAAGACGTCCCTGCATCGTGAATGGATTG
GATGAGAACTTTTGTCAGTTTCTTCCTTTTGTTAGGTATCATCCAAGAAG
TCACAGCGAGCGATCCATACATCTCTATACAACTTCAAACAAcgtggaag
aaattttgtctaACTTTGGGAATTTTTAGAAATGAGTTGTCGAAACTTAC
GGAGATAAAAGTCAACTTGATAGTGGTCATCAACGCGGACCAAAACTGTT
TGGATGGTGGAGATAAAGACAAAAAGGTATTTGCTTACGTTAACGTTATG
CGGGATGACGGGACAACGGAAGTCAGTTCTGAAGACACCATAAAAGTCAG
AGACGCGATCGAACGGAGAAAGACAATCGCAAGTTTCAAGGTTGTCAGTG
TGAATGCGCACAACGTAGCTTCCAAAGCTTTCCATTTCACAGAAGGAACT
ATTCTCCTTATCATCGGCATTGTATTGGGAATCTATTTGATTGGTTATTT
CCTAATCCTTGGCGTTCAATCATACAGTTCAAGTGATCCGAAAGACAAAC
CTCTATCGTTCATTTTGGCCgctgaaaataaacatttcgTAGATGGGATC
AAAAGACACAAGTCTACGCAATTCAACTTCTCAAGAGTTTCAAACAAGAA
AGTCCATATTATAGAAGACGTCCCTGCATCGTGAATGGATTGGATGAGAA
CTTTTGTCAGTTTCTTCCTTTTGTTAGGTATCATCCAAGAAGTCACAGCG
AGCGATCCATACATCTCTATACAACTTCAAACAAcgtggaagaaattttg
tctaACTTTGGGAATTTTTAGAAATGAGTTGTCGAAACTTACGGAGATAA
AAGTCAACTTGATAGTGGTCATCAACGCGGACCAAAACTGTTTGGATGGT
GGAGATAAAGACAAAAAGGTATTTGCTTACGTTAACGTTATGCGGGATGA
CGGGACAACGGAAGTCAGTTCTGAAGACACCATAAAAGTCAGAGACGCGA
TCGAACGGAGAAAGACAATCGCAAGTTTCAAGGTTGTCAGTGTGAATGCG
CACAACGTAGCTTCCAAAGCTTTCCATTTCACAGAAGGAACTATTCTCCT
TATCATCGGCATTGTATTGGGAATCTATTTGATTGGTTATTTCCTAATCC
TTGGCGTTCAATCATACAGTTCAAGTGATCCGAAAGACAAACCTCTATCG
TTCATTTTGGCCgctgaaaataaacatttcgTAGATGGGATCAAAAGACA
CAAGTCTACGCAATTCAACTTCTCAAGAGTTTCAAACAAGAAAGTCCATA
TTATAGAAGACGTCCCTGCATCGTGAATGGATTGGATGAGAACTTTTGTC
AGTTTCTTCCTTTTGTTAGGTATCATCCAAGAAGTCACAGCGAGCGATCC
ATACATCTCTATACAACTTCAAACAAcgtggaagaaattttgtctaACTT
TGGGAATTTTTAGAAATGAGTTGTCGAAACTTACGGAGATAAAAGTCAAC
TTGATAGTGGTCATCAACGCGGACCAAAACTGTTTGGATGGTGGAGATAA
AGACAAAAAGGTATTTGCTTACGTTAACGTTATGCGGGATGACGGGACAA
CGGAAGTCAGTTCTGAAGACACCATAAAAGTCAGAGACGCGATCGAACGG
AGAAAGACAATCGCAAGTTTCAAGGTTGTCAGTGTGAATGCGCACAACGT
AGCTTCCAAAGCTTTCCATTTCACAGAAGGAACTATTCTCCTTATCATCG
GCATTGTATTGGGAATCTATTTGATTGGTTATTTCCTAATCCTTGGCGTT
CAATCATACAGTTCAAGTGATCCGAAAGACAAACCTCTATCGTTCATTTT
GGCCgctgaaaataaacatttcgTAGATGGGATCAAAAGACACAAGTCTA
CGCAATTCAACTTCTCAAGAGTTTCAAACAAGAAAGTCCATATTATAGAA
GACGTCCCTGCATCGTGAATGGATTGGATGAGAACTTTTGTCAGTTTCTT
CCTTTTGTTAGGTATCATCCAAGAAGTCACAGCGAGCGATCCATACATCT
CTATACAACTTCAAACAAcgtggaagaaattttgtctaACTTTGGGAATT
TTTAGAAATGAGTTGTCGAAACTTACGGAGATAAAAGTCAACTTGATAGT
GGTCATCAACGCGGACCAAAACTGTTTGGATGGTGGAGATAAAGACAAAA
AGGTATTTGCTTACGTTAACGTTATGCGGGATGACGGGACAACGGAAGTC
AGTTCTGAAGACACCATAAAAGTCAGAGACGCGATCGAACGGAGAAAGAC
AATCGCAAGTTTCAAGGTTGTCAGTGTGAATGCGCACAACGTAGCTTCCA
AAGCTTTCCATTTCACAGAAGGAACTATTCTCCTTATCATCGGCATTGTA
TTGGGAATCTATTTGATTGGTTATTTCCTAATCCTTGGCGTTCAATCATA
CAGTTCAAGTGATCCGAAAGACAAACCTCTATCGTTCATTTTGGCCgctg
aaaataaacatttcgTAGATGGGATCAAAAGACACAAGTCTACGCAATTC
AACTTCTCAAGAGTTTCAAACAAGAAAGTCCATATTATAGAAGACGTCCC
TGCATCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13780MSTRG.13780Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13780.1.p1MSTRG.13780.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13780.1.p1.exon1MSTRG.13780.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13780.1.p1.exon2MSTRG.13780.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13780.1.p1.exon3MSTRG.13780.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13780.1.p1.exon4MSTRG.13780.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13780.1.p1.exon5MSTRG.13780.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:1094070..1098299 +