MSTRG.13770.1.p1 (mRNA) -

Overview
NameMSTRG.13770.1.p1
Unique NameMSTRG.13770.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:910648..913757+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13770.1.p1 ID=MSTRG.13770.1.p1|Name=MSTRG.13770.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3110bp|location=Sequence derived from alignment at sc0000111_pilon:910648..913757+ (Clytia hemisphaerica_ch_hm2_pilon)
CGATGAGTTGTTTGCAAttaacaaaatattcaaatgatAAGAAAAGATGG
ATTGGTTTCGATTGGTTTTCGAATAGATAGAATCGATATTTAACATCTAG
ACAGTTTTTCCACTATTCCCACGGGTTCCAAGGCCAGCCGATGTCAGCTA
TCCATAAACTGAACGAAACATAGGAAGAAGCGGAGATTACAACCGGGAAC
CCCTGGTTTCAGGCGTTGACACCTTTAGGTCACCTGACCATCACTCCTGA
GAATTGAAATATAATTATGTATTTGGCAGTATTTTTCACCCAAATCATTT
TGGTCTCTGCACAATGGTACGaaaaagaaccaaccaaccaaacaaaaaca
acaagtattgatacaaaggatgattcaaaaccTGTCCCAGCAAGATCACC
TATCGAATGTGTTTTGAAATGCAAGAGAAATCTCCAACAAGGTTATTTCA
TTGAAGAGAAGCAACTATGcttttgctttcaaagtaaAGAACAAGAATTA
TTTTCggatgatgaaaatgaaaatttagatgGAGCTTCGTTTCAGGAGCA
CAGGGAGCACATGGTAAGCGaaattttttataggaacaaattttaagaac
aatgagcctcaaaaatgccaaaaaataacaccaatagatcttatcagagg
ttttgatttttctaaaagagcgttgaattgtgggattgtttcgggagtat
cacaatagaattccctcgaggaattcctaagagatttttaTTGTGATACA
ATAgtaaaacaatcccacaatgcatcgcttttttagaaaaatcaaaagct
cCGATAAGGGCTATTGTCAACAGACTCTTATTAGTAGAGAGACAACAACT
TACCGTCATAATACCCAGCATCTATTTTTGCCAGAGTAACCCCTCCCCTC
GGGCTCGGGCTTGATAGAGGCTGGAAATTCCTGCTCTTAGTCtccttgtt
ttaattttctttctttagcaATGtggaaaagaaatcaaaacatgcAAAGA
CGTCAAAGAGATTTGTCCACATTGCAAATCAGAAATCTATGAAATGGAAA
TTCTTGGTGAAAAAACGAAAGCCTTTTGTGACTTGACTACAGACGGTGGT
AAGATATTTTGAGTTAATCTTTCGTCCACCGAATGTGCCAGCCCATAATG
CTTAGATCACAAATTTAAGattatttagacaaaatttttgGAAGGTAACA
AAATATATAATAGGTCATTCATTCGATcaaaaaacaagcccctaaaaatg
tcaaatcaaaaaaggttaaaggttttgtttttacataagtgttcccgttt
catatcagacatatatttcatatcagggcagtgtctgccttttgttaAAT
TATGCTGGTATAAGCAAATAAATGTTTTCCCCTcccctttctgaccaatc
ttactTCACATccttgtcaatccaatgtgaaaaaacttgtaaattaaaat
tgacgagtaagcaaacgatatcactcacatctaaaaacaaaacctttaaa
acaaatgttgagaatttttaatcgaacatttttataggCGGCTGGCTGCA
AATAACGAATATCAAATTTGACGACGCAAATAAAATCGATTCGATCTATG
CAAATCACATTGCTCAGCCATCGTCTATCGCTGACCTCCAAAATGTACCA
AACTCGCAATTCATGTTGGACCCACTCGCCTTACAAAACCTTTTCAATGA
AGAAGGTTACAGCGAACTAAGAATCAAATGCTATAAACTATGGCACGGCA
GAACCCTTGATGTTGTTCTATACGGTGAAAAGATACACAAATATGTAAAT
AGCGAAGCGTCCAACGTCGGTGGATGCGACGCGGTTCGATTTTTACCAGA
TGATAACTCATCAATTTCCCTCTCTCCTTGTGCTGATTACAGAATCGGAG
CAGGtgttagttttttttatcaattcccCATTTGGATATGGGCAAGAGGT
CACGTGGCTATCGCAAAAACTAACACTCGGTATGAATGCGATGACATTTT
CAGTGAGAATAACTTTGACCCTCAACAAAGAAATCTTGGTTACTGGTATT
TTTACATAAGATAAAAATTAGTCTCTTTTGCAAGTCATTATTCTTTAAGG
GACACAAAATAcatctatgaaccccatacaccaagtgcatttatgaaccc
catacaccaagtgcatctatgaaccACATACACCAAGTGCATCGATCAAC
CCCATACaccaagtgcatctatgaaccccatacaccAAGTGCATCTATCA
ACCCCATACATCAAGTGCATTTATGAACCACATACaccaagtgcatctat
gaaccACATAGaccaagtgcatctatgaaccccatacaccAAGTGCATCT
ATGATCCCCATACACCAAGTACATATATCAACCCCATACaccaagtgcat
ctatgaaccccatacaccaagtgcatctatgaaccccatacaccaaatgc
atctatgaaccccatacatcaagtgcatctatgaaccccatacaccAAGT
GCATTTATGAACCCTATAAaccaagtgcatctatgaaccccatacaccaa
gtgtatctatgaaccccatacaccAAGTACATCTATCAACCCCATACacc
aagtgcatctatgaaccccatacaccAAGTGCATCTATCAACCCCATACA
CCAAGTGCATTTATGAACCCTATAAaccaagtgcatctatgaaccccata
caccaagtgtatctatgaaccccatacaccAAGTACATCTATCAACCCCA
TACATCAAGTGCATCTATTAACCCCATACACCAAGTGCATCTATTAACCC
CATACaccaagtgcatctatgaaccccatacaccaagtgcatctatgaaT
CCCATAAaccaagtgcatctatgaaccccatacatcaagtgcatctatga
accccatacaccAAGTGCATTTATGAACCCTATAAGccaagtgcatctat
gaaccccatacatcaagtgcatctatgaaccccatacaccAAGTACATAT
ATCAACCCCATACaccaagtgcatctatgaaccccatacaccAAGTACAT
CTATCAACCCCATACACCAAGTGCATCTACGAACCCCATACaccaagtgc
atctatgaac

Coding sequence (CDS) from alignment at sc0000111_pilon:910648..913757+

>MSTRG.13770.1.p1 ID=MSTRG.13770.1.p1|Name=MSTRG.13770.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2862bp|location=Sequence derived from alignment at sc0000111_pilon:910648..913757+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATTTGGCAGTATTTTTCACCCAAATCATTTTGGTCTCTGCACAATG
GTACGaaaaagaaccaaccaaccaaacaaaaacaacaagtattgatacaa
aggatgattcaaaaccTGTCCCAGCAAGATCACCTATCGAATGTGTTTTG
AAATGCAAGAGAAATCTCCAACAAGGTTATTTCATTGAAGAGAAGCAACT
ATGcttttgctttcaaagtaaAGAACAAGAATTATTTTCggatgatgaaa
atgaaaatttagatgGAGCTTCGTTTCAGGAGCACAGGGAGCACATGcaA
TGtggaaaagaaatcaaaacatgcAAAGACGTCAAAGAGATTTGTCCACA
TTGCAAATCAGAAATCTATGAAATGGAAATTCTTGGTGAAAAAACGAAAG
CCTTTTGTGACTTGACTACAGACGGTGgCGGCTGGCTGCAAATAACGAAT
ATCAAATTTGACGACGCAAATAAAATCGATTCGATCTATGCAAATCACAT
TGCTCAGCCATCGTCTATCGCTGACCTCCAAAATGTACCAAACTCGCAAT
TCATGTTGGACCCACTCGCCTTACAAAACCTTTTCAATGAAGAAGGTTAC
AGCGAACTAAGAATCAAATGCTATAAACTATGGCACGGCAGAACCCTTGA
TGTTGTTCTATACGGTGAAAAGATACACAAATATGTAAATAGCGAAGCGT
CCAACGTCGGTGGATGCGACGCGGTTCGATTTTTACCAGATGATAACTCA
TCAATTTCCCTCTCTCCTTGTGCTGATTACAGAATCGGAGCAGGtgttag
ttttttttatcaattcccCATTTGGATATGGGCAAGAGGTCACGTGGCTA
TCGCAAAAACTAACACTCGGTATGAATGCGATGACATTTTCAGTGAGAAT
AACTTTGACCCTCAACAAAGAAATCTTGGTTACTGGTATTTTTACATAAG
ATAAATGTATTTGGCAGTATTTTTCACCCAAATCATTTTGGTCTCTGCAC
AATGGTACGaaaaagaaccaaccaaccaaacaaaaacaacaagtattgat
acaaaggatgattcaaaaccTGTCCCAGCAAGATCACCTATCGAATGTGT
TTTGAAATGCAAGAGAAATCTCCAACAAGGTTATTTCATTGAAGAGAAGC
AACTATGcttttgctttcaaagtaaAGAACAAGAATTATTTTCggatgat
gaaaatgaaaatttagatgGAGCTTCGTTTCAGGAGCACAGGGAGCACAT
GcaATGtggaaaagaaatcaaaacatgcAAAGACGTCAAAGAGATTTGTC
CACATTGCAAATCAGAAATCTATGAAATGGAAATTCTTGGTGAAAAAACG
AAAGCCTTTTGTGACTTGACTACAGACGGTGgCGGCTGGCTGCAAATAAC
GAATATCAAATTTGACGACGCAAATAAAATCGATTCGATCTATGCAAATC
ACATTGCTCAGCCATCGTCTATCGCTGACCTCCAAAATGTACCAAACTCG
CAATTCATGTTGGACCCACTCGCCTTACAAAACCTTTTCAATGAAGAAGG
TTACAGCGAACTAAGAATCAAATGCTATAAACTATGGCACGGCAGAACCC
TTGATGTTGTTCTATACGGTGAAAAGATACACAAATATGTAAATAGCGAA
GCGTCCAACGTCGGTGGATGCGACGCGGTTCGATTTTTACCAGATGATAA
CTCATCAATTTCCCTCTCTCCTTGTGCTGATTACAGAATCGGAGCAGGtg
ttagttttttttatcaattcccCATTTGGATATGGGCAAGAGGTCACGTG
GCTATCGCAAAAACTAACACTCGGTATGAATGCGATGACATTTTCAGTGA
GAATAACTTTGACCCTCAACAAAGAAATCTTGGTTACTGGTATTTTTACA
TAAGATAAATGTATTTGGCAGTATTTTTCACCCAAATCATTTTGGTCTCT
GCACAATGGTACGaaaaagaaccaaccaaccaaacaaaaacaacaagtat
tgatacaaaggatgattcaaaaccTGTCCCAGCAAGATCACCTATCGAAT
GTGTTTTGAAATGCAAGAGAAATCTCCAACAAGGTTATTTCATTGAAGAG
AAGCAACTATGcttttgctttcaaagtaaAGAACAAGAATTATTTTCgga
tgatgaaaatgaaaatttagatgGAGCTTCGTTTCAGGAGCACAGGGAGC
ACATGcaATGtggaaaagaaatcaaaacatgcAAAGACGTCAAAGAGATT
TGTCCACATTGCAAATCAGAAATCTATGAAATGGAAATTCTTGGTGAAAA
AACGAAAGCCTTTTGTGACTTGACTACAGACGGTGgCGGCTGGCTGCAAA
TAACGAATATCAAATTTGACGACGCAAATAAAATCGATTCGATCTATGCA
AATCACATTGCTCAGCCATCGTCTATCGCTGACCTCCAAAATGTACCAAA
CTCGCAATTCATGTTGGACCCACTCGCCTTACAAAACCTTTTCAATGAAG
AAGGTTACAGCGAACTAAGAATCAAATGCTATAAACTATGGCACGGCAGA
ACCCTTGATGTTGTTCTATACGGTGAAAAGATACACAAATATGTAAATAG
CGAAGCGTCCAACGTCGGTGGATGCGACGCGGTTCGATTTTTACCAGATG
ATAACTCATCAATTTCCCTCTCTCCTTGTGCTGATTACAGAATCGGAGCA
GGtgttagttttttttatcaattcccCATTTGGATATGGGCAAGAGGTCA
CGTGGCTATCGCAAAAACTAACACTCGGTATGAATGCGATGACATTTTCA
GTGAGAATAACTTTGACCCTCAACAAAGAAATCTTGGTTACTGGTATTTT
TACATAAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13770MSTRG.13770Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13770.1.p1MSTRG.13770.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13770.1.p1.exon1MSTRG.13770.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13770.1.p1.exon2MSTRG.13770.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13770.1.p1.exon3MSTRG.13770.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:910648..913757 +