MSTRG.13766.1.p1 (mRNA) -

Overview
NameMSTRG.13766.1.p1
Unique NameMSTRG.13766.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:824559..827959-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13766.1.p1 ID=MSTRG.13766.1.p1|Name=MSTRG.13766.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3401bp|location=Sequence derived from alignment at sc0000111_pilon:824559..827959- (Clytia hemisphaerica_ch_hm2_pilon)
GGCACAATGATAGTAAACAAAAAAACTAGTACTGTGGAGTGATGAAGAGA
GAGAGCATCGTCAGTTAAAGGATACAATGGAAATTTTTTGTTGGAAACCC
TCTGTTTTCTTTTTATACATCTTCTACTTAATATTTGTCGGGCAAGTTAC
CACTGTTCCCGATCTAGTGAAGAAAAATCAAAATGGTAGTGATATTGACC
AGTTTGGCGTTACCATCTTTAACATCACTAATGACAACGCCGATCCAGTT
TGCGGGGATGTTTTGACACTTGATGGCAAAAATTATATGGAAAATTCATG
CGCAAAGTATTTAACAAACATTGATGGTATAAACATGATATCAGATTTCA
AATTTTTTGGGAGACCTTTTGATCAGTCTGACGGTACGACTAATAGCGGC
CAAGCCAAGGTAAGACGTAAAATAAGTTTTTATTTTCTAGCAGCTTCTTT
ACAAGTGCTAATTATAGGGGTTAGAAAAAAAGCTGCCGAAGAAAGGTGCT
TTGACTATAGTCAGAAAATTTCTTAAGGGATTTGAAGATGAAACTTTTGT
TTTGGTTTCCTTGACACTTTTAACAAAAAATTGCCTTTGCAAGTTGTTTG
GTAATTTATTCTGTCAATAGTAATTAAGAATTTAATTACAAAAATGACGT
TGTGAACTTTAGAAAAACGTCAATAGAATGTTCTACTACCATCTTAAAAC
AAAAATATGGTAATATTTCAATGGGTATCTAACTTTTTTTCGTTCGAATT
CTTTTTAATTTTTTTGGGGAAATTTTTCTAAATCGATGAAAATTTGGTCC
TCAAAGTTGAAATACTTTTCATTGCGATTTTTAAATTTTCAGATTCAGGA
ATAGTTTGGCCTAACAGAAAATGTATAACATACCATAGTTTTTGTTGGCT
ACATCAGTATATTCACTATGGTCAGAGCCCTTAAATCTAGAAGGGAAGAA
AAATTGTCATTTATATATTCCATATTTCTTTTTCATCATAAACGTGGAGC
GATTTAGTTGATTATAAAAGGGGCGATACTTCTGAACTTTTGCCATATAC
ATAGAGCAAAGGAGAAAAAAATGAGAGAATGTCTTGAGAATTATTTTTCT
GATAATGTCAGCATTTTTTTGTGAAAATTTTATCTATAATGAACTCTTAC
ACATTATATACCACTATAGATACATTTCAATGGGTTCTTGTCATTTGGTA
CATATTCACAAAACATTGCAAACAAACAAGCCTGTTTTCACTGGGATAAA
TCACCATCACCTTCAAAATACCTTTATAATTTTCTGGCACCCTATTGGAT
GAGGTGAGATTTTATCTTATTTGTTTGTAATTATTTATGTAGACCAAATC
TCCTTCGTGAGAGGAATTCTCGCCAAGATCAAAGTTGCATATATTTTTTT
ACAAGCAGCCAAGTCCCTAAGGGCCGGCTAAACAACCGGCAATTGACCAA
CTTACTTAGCAACCCTGGATCCTTAGATTTTATGTAATTTGAATCGACAA
ACTGACCCGGGAAAAAATTTATAAGTCTCTTTAAACGAGGCCAAAAATAG
TTACAAATTGGCAAAATGGACCCACTGCAGCATGTACAATATTTGGATGA
ATATATTTTTTTAAAGACAATGTATTAAAATATGCTGAAAGCTTTTGGAA
CAGACTTTTTTGGAATTCAGACTTTTGGTGACAATATGTCTTAATTCTTT
ATTAACAAGGTATTTTGAAGGCTCAGTCCATTTCTTCGAATTATCAGAAA
CAGACCATAGCAACGATTGGGAGACCATCTTTGCAGATTTGCAACAAACT
GGATTCAATCTTGATACAAACTCGGCGAAGGAAAGAATTTTAGTTTTTAC
ATGGCTTCGGATGTCTTCGGATGGTACGAAAAATGGAAATGTTTTCGAGG
TAAGCGTCCGGTTTTTGATAGGCCTTATTCATGAACAGAAAAGTTGATAT
AAGTTAACTCAATTCAAGTGTTGAAAGGCTAATTTTCATGGAACTGTATC
ACTCTGGGTTTGATGTTTCTTTCATTTTGAGTGCAGGAAACCTCAAAGTT
GGACAATAAACAATCATGTTTATCGATCGTACGTTCGACAAAAAATTAAT
TAAGAAACAGGCCCAGATACAACAAAATGCATAATTAGTAATTAGATTTA
TATCAGCCCTAGAGACAGTTTCATAAGCCCGGAGGGTGAGTAAGGTAAGT
AATGGCGGGTGAAAAGCAAGTTTCGATATTTGACGTACGGCATTATGTTG
GCTTTGCTTATACGGGTATTTTGGTGTTTTTCCCGTACAGGGCAAAGTAG
ACACAACGACATGCACGGGCAGCCCTGCAACCGTAGCCGTAGAATATCTC
CGATACATAATCTCGCTATTTGTTTATACTTCTACAGGAAAAACTGATGA
ACACATTCCAATTGTACTTGATCTTACATGGCGGTGTAACATACGCACAA
TTCTACTACAGAGCTTTAGATACCAATCATTTAGTTATCGATGATGATGT
TGGGACAACTTGTTATGGGCAGGTAAGATTTAAGTCACTCCAAAGTAGCT
CTGATGAAGGCAGTTACACATAATTTTTAAGGATTACAATAATCGAAATG
AGCCTCATGATTCTTGTTTACACTGTAGATGAAAGAACGGAAAACTGAGT
CTTTTTAACTAAAGAAAATAATCGAAGTTTTTGGGGCTGGACATTAGTAG
TAAAAGTTCTTAATGCTTTTTTAAATCTTAGCCTTTTTATAATCTTAGTA
TTTCTTATAAAAAAAATTCTTCTTAAAACGATGTGATGAAACGCGATTGT
CATCCGTTTCTTTCACGAAATTTTGATCGTTAATGGAACTTTCGTACGAC
CATGTTCTTTTTCATCGCTCCCGGATGAAAAGAACGTGAAAAAGCGTTCC
CATTCCGATGAAAATTAAACGTTTTGCTGGCGATTTTTTTGACGCGACGT
TCACACCGTCTCACTAAAAACCGGGATTTCTCATCTCGTTTCTTGATGAG
TTCCACTTTGACGATTTTTGAAAAAGAGAAGCCTTTCAAGTGCTTTGACG
CAAGTTCGATTATTTTACTACTGCAGGAGCTTCGAAAGTTAAAAGTGACG
TCAAAAATCGAATGTTTTGGGCAAAAAAGTTGCAAAGTGGAATAGACTAA
TGCGTCAAAAAAACGCGGGTGACGTCTAGTATAGGCTTAGTGTTTCGGAA
CCGTTTCGTTTTTGAGTGAAACGGAGCGTAGCGTGTGAACGTGGTCTTAT
TTCAAGCACATTGAATGTAATTTTTAGGTTGGAATAGCAAGAGATCTAAA
AAATCTTTTTGGGACAGAAAGTGTAGGATACCGGCTTGGAAGATTACCAC
AAGTTGCTGAATATTATTCGAATGTTAACAACAATGATGTTGGGAGCTGG
G

Coding sequence (CDS) from alignment at sc0000111_pilon:824559..827959-

>MSTRG.13766.1.p1 ID=MSTRG.13766.1.p1|Name=MSTRG.13766.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4575bp|location=Sequence derived from alignment at sc0000111_pilon:824559..827959- (Clytia hemisphaerica_ch_hm2_pilon)
GTTGGAATAGCAAGAGATCTAAAAAATCTTTTTGGGACAGAAAGTGTAGG
ATACCGGCTTGGAAGATTACCACAAGTTGCTGAATATTATTCGAATGTTA
ACAACAATGATGTTGGGAGCTGGGAAAAACTGATGAACACATTCCAATTG
TACTTGATCTTACATGGCGGTGTAACATACGCACAATTCTACTACAGAGC
TTTAGATACCAATCATTTAGTTATCGATGATGATGTTGGGACAACTTGTT
ATGGGCAGGTATTTTGAAGGCTCAGTCCATTTCTTCGAATTATCAGAAAC
AGACCATAGCAACGATTGGGAGACCATCTTTGCAGATTTGCAACAAACTG
GATTCAATCTTGATACAAACTCGGCGAAGGAAAGAATTTTAGTTTTTACA
TGGCTTCGGATGTCTTCGGATGGTACGAAAAATGGAAATGTTTTCGAGAT
ACATTTCAATGGGTTCTTGTCATTTGGTACATATTCACAAAACATTGCAA
ACAAACAAGCCTGTTTTCACTGGGATAAATCACCATCACCTTCAAAATAC
CTTTATAATTTTCTGGCACCCTATTGGATGAGATGGAAATTTTTTGTTGG
AAACCCTCTGTTTTCTTTTTATACATCTTCTACTTAATATTTGTCGGGCA
AGTTACCACTGTTCCCGATCTAGTGAAGAAAAATCAAAATGGTAGTGATA
TTGACCAGTTTGGCGTTACCATCTTTAACATCACTAATGACAACGCCGAT
CCAGTTTGCGGGGATGTTTTGACACTTGATGGCAAAAATTATATGGAAAA
TTCATGCGCAAAGTATTTAACAAACATTGATGGTATAAACATGATATCAG
ATTTCAAATTTTTTGGGAGACCTTTTGATCAGTCTGACGGTACGACTAAT
AGCGGCCAAGCCAAGGTTGGAATAGCAAGAGATCTAAAAAATCTTTTTGG
GACAGAAAGTGTAGGATACCGGCTTGGAAGATTACCACAAGTTGCTGAAT
ATTATTCGAATGTTAACAACAATGATGTTGGGAGCTGGGAAAAACTGATG
AACACATTCCAATTGTACTTGATCTTACATGGCGGTGTAACATACGCACA
ATTCTACTACAGAGCTTTAGATACCAATCATTTAGTTATCGATGATGATG
TTGGGACAACTTGTTATGGGCAGGTATTTTGAAGGCTCAGTCCATTTCTT
CGAATTATCAGAAACAGACCATAGCAACGATTGGGAGACCATCTTTGCAG
ATTTGCAACAAACTGGATTCAATCTTGATACAAACTCGGCGAAGGAAAGA
ATTTTAGTTTTTACATGGCTTCGGATGTCTTCGGATGGTACGAAAAATGG
AAATGTTTTCGAGATACATTTCAATGGGTTCTTGTCATTTGGTACATATT
CACAAAACATTGCAAACAAACAAGCCTGTTTTCACTGGGATAAATCACCA
TCACCTTCAAAATACCTTTATAATTTTCTGGCACCCTATTGGATGAGATG
GAAATTTTTTGTTGGAAACCCTCTGTTTTCTTTTTATACATCTTCTACTT
AATATTTGTCGGGCAAGTTACCACTGTTCCCGATCTAGTGAAGAAAAATC
AAAATGGTAGTGATATTGACCAGTTTGGCGTTACCATCTTTAACATCACT
AATGACAACGCCGATCCAGTTTGCGGGGATGTTTTGACACTTGATGGCAA
AAATTATATGGAAAATTCATGCGCAAAGTATTTAACAAACATTGATGGTA
TAAACATGATATCAGATTTCAAATTTTTTGGGAGACCTTTTGATCAGTCT
GACGGTACGACTAATAGCGGCCAAGCCAAGGTTGGAATAGCAAGAGATCT
AAAAAATCTTTTTGGGACAGAAAGTGTAGGATACCGGCTTGGAAGATTAC
CACAAGTTGCTGAATATTATTCGAATGTTAACAACAATGATGTTGGGAGC
TGGGAAAAACTGATGAACACATTCCAATTGTACTTGATCTTACATGGCGG
TGTAACATACGCACAATTCTACTACAGAGCTTTAGATACCAATCATTTAG
TTATCGATGATGATGTTGGGACAACTTGTTATGGGCAGGTATTTTGAAGG
CTCAGTCCATTTCTTCGAATTATCAGAAACAGACCATAGCAACGATTGGG
AGACCATCTTTGCAGATTTGCAACAAACTGGATTCAATCTTGATACAAAC
TCGGCGAAGGAAAGAATTTTAGTTTTTACATGGCTTCGGATGTCTTCGGA
TGGTACGAAAAATGGAAATGTTTTCGAGATACATTTCAATGGGTTCTTGT
CATTTGGTACATATTCACAAAACATTGCAAACAAACAAGCCTGTTTTCAC
TGGGATAAATCACCATCACCTTCAAAATACCTTTATAATTTTCTGGCACC
CTATTGGATGAGATGGAAATTTTTTGTTGGAAACCCTCTGTTTTCTTTTT
ATACATCTTCTACTTAATATTTGTCGGGCAAGTTACCACTGTTCCCGATC
TAGTGAAGAAAAATCAAAATGGTAGTGATATTGACCAGTTTGGCGTTACC
ATCTTTAACATCACTAATGACAACGCCGATCCAGTTTGCGGGGATGTTTT
GACACTTGATGGCAAAAATTATATGGAAAATTCATGCGCAAAGTATTTAA
CAAACATTGATGGTATAAACATGATATCAGATTTCAAATTTTTTGGGAGA
CCTTTTGATCAGTCTGACGGTACGACTAATAGCGGCCAAGCCAAGGTTGG
AATAGCAAGAGATCTAAAAAATCTTTTTGGGACAGAAAGTGTAGGATACC
GGCTTGGAAGATTACCACAAGTTGCTGAATATTATTCGAATGTTAACAAC
AATGATGTTGGGAGCTGGGAAAAACTGATGAACACATTCCAATTGTACTT
GATCTTACATGGCGGTGTAACATACGCACAATTCTACTACAGAGCTTTAG
ATACCAATCATTTAGTTATCGATGATGATGTTGGGACAACTTGTTATGGG
CAGGTATTTTGAAGGCTCAGTCCATTTCTTCGAATTATCAGAAACAGACC
ATAGCAACGATTGGGAGACCATCTTTGCAGATTTGCAACAAACTGGATTC
AATCTTGATACAAACTCGGCGAAGGAAAGAATTTTAGTTTTTACATGGCT
TCGGATGTCTTCGGATGGTACGAAAAATGGAAATGTTTTCGAGATACATT
TCAATGGGTTCTTGTCATTTGGTACATATTCACAAAACATTGCAAACAAA
CAAGCCTGTTTTCACTGGGATAAATCACCATCACCTTCAAAATACCTTTA
TAATTTTCTGGCACCCTATTGGATGAGATGGAAATTTTTTGTTGGAAACC
CTCTGTTTTCTTTTTATACATCTTCTACTTAATATTTGTCGGGCAAGTTA
CCACTGTTCCCGATCTAGTGAAGAAAAATCAAAATGGTAGTGATATTGAC
CAGTTTGGCGTTACCATCTTTAACATCACTAATGACAACGCCGATCCAGT
TTGCGGGGATGTTTTGACACTTGATGGCAAAAATTATATGGAAAATTCAT
GCGCAAAGTATTTAACAAACATTGATGGTATAAACATGATATCAGATTTC
AAATTTTTTGGGAGACCTTTTGATCAGTCTGACGGTACGACTAATAGCGG
CCAAGCCAAGGTTGGAATAGCAAGAGATCTAAAAAATCTTTTTGGGACAG
AAAGTGTAGGATACCGGCTTGGAAGATTACCACAAGTTGCTGAATATTAT
TCGAATGTTAACAACAATGATGTTGGGAGCTGGGAAAAACTGATGAACAC
ATTCCAATTGTACTTGATCTTACATGGCGGTGTAACATACGCACAATTCT
ACTACAGAGCTTTAGATACCAATCATTTAGTTATCGATGATGATGTTGGG
ACAACTTGTTATGGGCAGGTATTTTGAAGGCTCAGTCCATTTCTTCGAAT
TATCAGAAACAGACCATAGCAACGATTGGGAGACCATCTTTGCAGATTTG
CAACAAACTGGATTCAATCTTGATACAAACTCGGCGAAGGAAAGAATTTT
AGTTTTTACATGGCTTCGGATGTCTTCGGATGGTACGAAAAATGGAAATG
TTTTCGAGATACATTTCAATGGGTTCTTGTCATTTGGTACATATTCACAA
AACATTGCAAACAAACAAGCCTGTTTTCACTGGGATAAATCACCATCACC
TTCAAAATACCTTTATAATTTTCTGGCACCCTATTGGATGAGATGGAAAT
TTTTTGTTGGAAACCCTCTGTTTTCTTTTTATACATCTTCTACTTAATAT
TTGTCGGGCAAGTTACCACTGTTCCCGATCTAGTGAAGAAAAATCAAAAT
GGTAGTGATATTGACCAGTTTGGCGTTACCATCTTTAACATCACTAATGA
CAACGCCGATCCAGTTTGCGGGGATGTTTTGACACTTGATGGCAAAAATT
ATATGGAAAATTCATGCGCAAAGTATTTAACAAACATTGATGGTATAAAC
ATGATATCAGATTTCAAATTTTTTGGGAGACCTTTTGATCAGTCTGACGG
TACGACTAATAGCGGCCAAGCCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13766MSTRG.13766Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13766.1.p1MSTRG.13766.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13766.1.p1.exon5MSTRG.13766.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13766.1.p1.exon4MSTRG.13766.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13766.1.p1.exon3MSTRG.13766.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13766.1.p1.exon2MSTRG.13766.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13766.1.p1.exon1MSTRG.13766.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:824559..827959 -