MSTRG.13765.1.p1 (mRNA) -

Overview
NameMSTRG.13765.1.p1
Unique NameMSTRG.13765.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:819190..824002-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13765.1.p1 ID=MSTRG.13765.1.p1|Name=MSTRG.13765.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4813bp|location=Sequence derived from alignment at sc0000111_pilon:819190..824002- (Clytia hemisphaerica_ch_hm2_pilon)
TGTATCAAGAGCAAGAGAGGGAAGACTATTGTGAGAATGTGGGTGAAAAC
ATCAAATGTGAATGGAGAATGGCTGCTATCCAAACTATCGAAGCAACTGC
CAGTGCACCCATCAAAAATACACCCATCAATACCCAGGTGGGGATATCTT
TACCCCGTCGTTCAGATAGGTTCTGCGAATACCGTGACGATGGCAAATTC
GTATTCCCTTTGGATTGTAGGGGTTATTTTATTTGTGATGGTGGGAAAGT
CTCATTTGCTTCATGTCCTGAAGGTGAACATTTTCATCCGAAACTTCGAA
GGTGTGTTGACGAGAAGCAAAGTTCATGTTTTTCAAAGATGCCGGTCCAA
TCAGGTATTACCGAGTTTATGTATGTGTGTTTTTTTCTGCGACAGAGATC
GTTAGTTTTTCATTTGTCTACATCCTGACTCATTGAGGACGACGGTAATT
CAGCACTTTTACCATCCTCGATTTTGCGGGTCAGAACTGCGGGTTCTTCC
AAATCACTTCAGTCACTTGACCGTCCACAAAAGTGAAAATATATAACTCG
CTATTATAGTATCTAAACTCGCTATTATGGTAAATTAGCCCTTTTTATAA
TTACTGTCATATGTAATAATATGGGTTCGAAAATGAAAATGCTGTATGAT
TTTATGAAAGGTTCTTTCCATAACTAGATTGGCATTGTGCTTATAAAATA
TTGATGGACCGATATGATTATTGTTTTTGTAAGAACTAATTTATTTTCTG
GACGAAGTTACAAGTATTATTTCATTTTCTGTGCAAGGTTAAGATTATGT
AGTATTGAATGCATGTATATACTCATTTACTCAATAGATATGGTGGTTAC
ATATTTGCCAACAGCAAAAAATTATAAGCCGCGAGACGTGATAAAAACGT
TGCACAAACTATGGACGGTCAATATTCATCTCAAACCTCGTGGCATTTCA
ACATTTAGAGGCTACACAAGTGCTTTTTACGCAGTTGCTCCCATGGAAGG
AGTTTTTCGGAGTGTGAAATATCGAACGCCAAGTATTCTTTTTGAAAGCG
GTACAACTAGATTACAGGTATATTACCCTTCCCCATGGCGTTCAAAATTC
AAGACCTAAAAAGCTTTGACGGAAAAGTGGGTGTGAATGTTAGGTTTTTT
GAAAACAAATTGACGTCAACACTGCAATGACATCATTAATTAGGTCCACC
GGATTTTGACGTCAAAGCACGCTTGCTAGGCCAAAACGATTTTTTTCTGA
ATTGTTTGCGTTTATTTCCACGGCTTTTGGTCTAGATTTGAAAATCTTGG
ATGGGAAATGAAGCCAGGAATACACAAGAAGCGATGATAGACTTGCTTGA
GTTACATGTCAAAGTGAATTATGAGAAATCAATGTTTTCTAATATCCACC
TATTATTATACTAGCAGAAAGGTTTGTGATTAAGTATTTCAACCCCGCAA
CTTTCTTTAAATTCGTTTTTAGGTTTGCGGAGTCTTGAACTATCCGAGCC
CATCCACCTGTCAAACAATATCAACACCACTACCTCTCAACAAATTCACC
AGAGTACAAATTCAACAAATCCCAAATGGAGCTGACTCTAAATTCATCGT
CAAATACAATAGGACAACCATGTGGATCGGGAAGCCGACAAATTTGCGAG
CATTTCACAATGTTCTTGTCTATCATTGGGACAATAGTGATTCAGGAATA
AGACCTGCTAATGCTGAAACTAAACGTTGCAAGTTTTACTCTGGTATGTA
AATATTCACGCTTTTTTATACGATTATATTTTAGCGACCGTAGTGCAGTG
GTAGAGCATCCTGCTACGGTGCGCAAGGTTGTGGGTTCAACCCTCAGCCG
GGTCATACCAAAGATTTCTAAAATGGTACTTGATGTCTCCCTGCTTGATG
CTCAGCAATTAAGAGAAGGATCAAGGGTAAATGGAGCAATCCAGGCAGAA
AAAGTGGCGCCCTCCCCTACCTTCGGGTAGATAGCTATCGAAAGAGGAGC
CTTCGGGTCGCCTCCGACTGCGGTCGCAGACTTACTTTACTTTATACGAA
TACTCATGATGAAATTGGCCGAAAAATTAAGAATATGATAAGAATATCAC
CATCATGAAATTTAGCAACAGAACCTAAGACTGTCATTTTTTAGAGCAAT
TTTAACTGTAAATTACTCCCCAGTAAGGATCAAAACCTTTCATAAAACTG
CCATTTTATGCTTCACGTGTGTATTACATGTTAAATTCAAGTATGATTTC
GATCCTAGCCTAAGAATACCGTAAGAATATTTTGGGATGATTTTCCCCAA
AAAGTTAAGAATATCCATCATGAAATGAATAAACACCATTCTTATGGAAA
AAGCGTGTAATAGATCACTGACCTTTATATATCCCTGGTGGGCAAAAAAA
GAGTATGTGAAGAATTTTATAGACAATGAATGAAATGTCTCAAAATAAAA
AGCTAATGACAGACTAATTTTTGTGGTTTAAGTATCACATGAGAAATATC
TAGTGAAAGTGCTTATGAAACGAGGTTTTCCATGCGCAACTAAAAAAGAT
ATAAATTTCATGGCTAACTATTTGGATTAAAAAAGGCTCGTATATTAGAA
GGCAGACGATCAGACAAACTTGAGCAAAGTCGTATTTCATTCTAATTTCC
TCCAAGTAACGATCAAACAATGTTTTTCACTACACAGTACACTACACTTA
AGGCTTGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCT
CAATCCCACCAACATAAAACGCTTTCTCGTGTCTCCACCCCATTTTTCTT
CTTAATAATATTTGTGCTTCTCTCACCGGGGGGGGGGGGGGGGGGGCACT
CGATTTCGAAACGACGGTACGTGCCGTGCAAAATCTGCTTTTCAAAATCG
TACCCTTACAGTGCAGTTCAATATGGCTGAAAAGGTACCATTTCAGTGCA
TTTTCTCTTACGATTTACCCAACCCATATAGTGCACTATATTTCTCAGCT
GTAAATCTGCGTGAAAGAAGAAGCTTGGGAAACTTTCTGAGAAAAACTTA
TTCTTGTCAGCTGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGA
GAAGTAAAAACCATTCTTTTTAACAATTATTTTGAATTTGTTTTAAAATT
CGACCCTTGCAGTGTAATCTCACAGAAACACACCCTTACAGTGCATTTTG
GGATGCTGAAAAACCCAACCCTTAAGCGCGGTACATGACGTAGGCCAGAT
CATATGAGCCCCCCCCCCCCTCCCCGGGTTCTCTCACTTTTGTCCCTGGG
ACAAAATCAGCGTGTCTTTTGGGTATCTCCCTCACTCTTTGTCCCATGAA
ACAAAAAAAGAAACCATAGGACACGCACTTTTTTCTTAAGTTGGTGGGAT
GCAGCATGTTGCGTTGCACCAACGCGAAAAAAACTTTTCGTGTCCCCAAG
CCTTTATACAAACGCCTGATTGCAAACAAACTTCGTTGCGGCTCGTTTTA
TCGCATCCAATCAGATTGCAGTATTTTCTCTCACAATAACAAAGAGAAAA
AGTTTGCCATTTTGAATTGCTCTTGGGAATAGAAGATTGTTATTTTGCCT
TTGATAACAAAATATTTTTATTGCTTTGGGAATACGAAAAGTCTTCGGCA
AAGGCGATCATGTTTTTACCGAGTTTGTTTGCAACTAAGCTAATAGTATA
GATATTTTTAAAGTCAAAATTATACTATTTACTTAAAACCTTGGCTATAC
AATTTTAGTCTGTACAGACCATATTTCTTGCCCAACCTGTAGTTCAGCCC
GTCTCCATATTTTCCCTGCAATAATCAAGTCTTTTTTTAAGTTCTTTTAG
GTCTTCTAGAAATTAACTAAAGGGGCAGAAAGATAAGCGAGGTTGGGTTA
CTTTAATAATAAGATATTTACTTTTAAGATTTTCATTAAAAGAAACAGTA
CTTTTTCTTAACCTACGCTGTGAGCTGGGGTCCTAGTGGGTCTGTGACAC
AGGGGTGTATTAGAAAAATGAGTATATGTTACGTAAAATTTGTACAAGTT
CAATTTAATTGCTTTTCCATTTTGTAGGAATCACTCAAGGTCACCTTATT
GAAACTATTAAGAAACTATATAACACATGGACACTCCAAATCACCTTGCT
CCCTCTTGGTATACGAGATAGTGACTCAAACATACTTCACGTCACGCAAT
ACTTAAACAGCGCGAGGGAAGGATTGTTGAAGTTGGATTTTATGGACGGC
ACTAGCCATTTGAGAATCTGTTCGCCTTCCATTACGTCAAAATCGTCAAA
TGGTTGTATCATACTGTTTCGTCCGTTGGAAATCAATAAGTTGGTCACAA
TAACGATTCAAAGAAGACAAACAACAAAAGGCGGATATGATTTAGTGATT
ACCCTTACTGGGTCACAGTTTTTTTCGATCAGATTCAATGATGCTGTATC
TCGAGTATTGGAAGATGTCAATGTATACGTGTCTGATTCGTGGATGCCAT
CTGCAAATGCTGTACTGGATGCCTATCAATTTAGCACGAAAATAAAATGA
TTTAACCACCTGCAAATATCTTCATTGACCTTGAGGGGATTAATTTTCGC
GAGGACTTATATTTTCACGAGGCAAATTTTTTTCAAAAATTATTTGATTT
TCGCGGGACTTATTTTCGGTACATTACTACTATTATTACTACGTTTCGCG
AGTTTTTTTTCGAAAACTCGAACCTGAAGACTAAAAGATCGAACAGTAGA
CTCATAGAAAACTTCGAAACATTTGAGATTTTGTCAAAAAATAAAAACTG
TTGTGCTTCTTTC

Coding sequence (CDS) from alignment at sc0000111_pilon:819190..824002-

>MSTRG.13765.1.p1 ID=MSTRG.13765.1.p1|Name=MSTRG.13765.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5040bp|location=Sequence derived from alignment at sc0000111_pilon:819190..824002- (Clytia hemisphaerica_ch_hm2_pilon)
GAATCACTCAAGGTCACCTTATTGAAACTATTAAGAAACTATATAACACA
TGGACACTCCAAATCACCTTGCTCCCTCTTGGTATACGAGATAGTGACTC
AAACATACTTCACGTCACGCAATACTTAAACAGCGCGAGGGAAGGATTGT
TGAAGTTGGATTTTATGGACGGCACTAGCCATTTGAGAATCTGTTCGCCT
TCCATTACGTCAAAATCGTCAAATGGTTGTATCATACTGTTTCGTCCGTT
GGAAATCAATAAGTTGGTCACAATAACGATTCAAAGAAGACAAACAACAA
AAGGCGGATATGATTTAGTGATTACCCTTACTGGGTCACAGTTTTTTTCG
ATCAGATTCAATGATGCTGTATCTCGAGTATTGGAAGATGTCAATGTATA
CGTGTCTGATTCGTGGATGCCATCTGCAAATGCTGTACTGGATGCCTATC
AATTTAGCACGAAAATAAAATGAGTTTGCGGAGTCTTGAACTATCCGAGC
CCATCCACCTGTCAAACAATATCAACACCACTACCTCTCAACAAATTCAC
CAGAGTACAAATTCAACAAATCCCAAATGGAGCTGACTCTAAATTCATCG
TCAAATACAATAGGACAACCATGTGGATCGGGAAGCCGACAAATTTGCGA
GCATTTCACAATGTTCTTGTCTATCATTGGGACAATAGTGATTCAGGAAT
AAGACCTGCTAATGCTGAAACTAAACGTTGCAAGTTTTACTCTGATATGG
TGGTTACATATTTGCCAACAGCAAAAAATTATAAGCCGCGAGACGTGATA
AAAACGTTGCACAAACTATGGACGGTCAATATTCATCTCAAACCTCGTGG
CATTTCAACATTTAGAGGCTACACAAGTGCTTTTTACGCAGTTGCTCCCA
TGGAAGGAGTTTTTCGGAGTGTGAAATATCGAACGCCAAGTATTCTTTTT
GAAAGCGGTACAACTAGATTACAGATGGCTGCTATCCAAACTATCGAAGC
AACTGCCAGTGCACCCATCAAAAATACACCCATCAATACCCAGGTGGGGA
TATCTTTACCCCGTCGTTCAGATAGGTTCTGCGAATACCGTGACGATGGC
AAATTCGTATTCCCTTTGGATTGTAGGGGTTATTTTATTTGTGATGGTGG
GAAAGTCTCATTTGCTTCATGTCCTGAAGGTGAACATTTTCATCCGAAAC
TTCGAAGGTGTGTTGACGAGAAGCAAAGTTCATGTTTTTCAAAGATGCCG
GTCCAATCAGGAATCACTCAAGGTCACCTTATTGAAACTATTAAGAAACT
ATATAACACATGGACACTCCAAATCACCTTGCTCCCTCTTGGTATACGAG
ATAGTGACTCAAACATACTTCACGTCACGCAATACTTAAACAGCGCGAGG
GAAGGATTGTTGAAGTTGGATTTTATGGACGGCACTAGCCATTTGAGAAT
CTGTTCGCCTTCCATTACGTCAAAATCGTCAAATGGTTGTATCATACTGT
TTCGTCCGTTGGAAATCAATAAGTTGGTCACAATAACGATTCAAAGAAGA
CAAACAACAAAAGGCGGATATGATTTAGTGATTACCCTTACTGGGTCACA
GTTTTTTTCGATCAGATTCAATGATGCTGTATCTCGAGTATTGGAAGATG
TCAATGTATACGTGTCTGATTCGTGGATGCCATCTGCAAATGCTGTACTG
GATGCCTATCAATTTAGCACGAAAATAAAATGAGTTTGCGGAGTCTTGAA
CTATCCGAGCCCATCCACCTGTCAAACAATATCAACACCACTACCTCTCA
ACAAATTCACCAGAGTACAAATTCAACAAATCCCAAATGGAGCTGACTCT
AAATTCATCGTCAAATACAATAGGACAACCATGTGGATCGGGAAGCCGAC
AAATTTGCGAGCATTTCACAATGTTCTTGTCTATCATTGGGACAATAGTG
ATTCAGGAATAAGACCTGCTAATGCTGAAACTAAACGTTGCAAGTTTTAC
TCTGATATGGTGGTTACATATTTGCCAACAGCAAAAAATTATAAGCCGCG
AGACGTGATAAAAACGTTGCACAAACTATGGACGGTCAATATTCATCTCA
AACCTCGTGGCATTTCAACATTTAGAGGCTACACAAGTGCTTTTTACGCA
GTTGCTCCCATGGAAGGAGTTTTTCGGAGTGTGAAATATCGAACGCCAAG
TATTCTTTTTGAAAGCGGTACAACTAGATTACAGATGGCTGCTATCCAAA
CTATCGAAGCAACTGCCAGTGCACCCATCAAAAATACACCCATCAATACC
CAGGTGGGGATATCTTTACCCCGTCGTTCAGATAGGTTCTGCGAATACCG
TGACGATGGCAAATTCGTATTCCCTTTGGATTGTAGGGGTTATTTTATTT
GTGATGGTGGGAAAGTCTCATTTGCTTCATGTCCTGAAGGTGAACATTTT
CATCCGAAACTTCGAAGGTGTGTTGACGAGAAGCAAAGTTCATGTTTTTC
AAAGATGCCGGTCCAATCAGGAATCACTCAAGGTCACCTTATTGAAACTA
TTAAGAAACTATATAACACATGGACACTCCAAATCACCTTGCTCCCTCTT
GGTATACGAGATAGTGACTCAAACATACTTCACGTCACGCAATACTTAAA
CAGCGCGAGGGAAGGATTGTTGAAGTTGGATTTTATGGACGGCACTAGCC
ATTTGAGAATCTGTTCGCCTTCCATTACGTCAAAATCGTCAAATGGTTGT
ATCATACTGTTTCGTCCGTTGGAAATCAATAAGTTGGTCACAATAACGAT
TCAAAGAAGACAAACAACAAAAGGCGGATATGATTTAGTGATTACCCTTA
CTGGGTCACAGTTTTTTTCGATCAGATTCAATGATGCTGTATCTCGAGTA
TTGGAAGATGTCAATGTATACGTGTCTGATTCGTGGATGCCATCTGCAAA
TGCTGTACTGGATGCCTATCAATTTAGCACGAAAATAAAATGAGTTTGCG
GAGTCTTGAACTATCCGAGCCCATCCACCTGTCAAACAATATCAACACCA
CTACCTCTCAACAAATTCACCAGAGTACAAATTCAACAAATCCCAAATGG
AGCTGACTCTAAATTCATCGTCAAATACAATAGGACAACCATGTGGATCG
GGAAGCCGACAAATTTGCGAGCATTTCACAATGTTCTTGTCTATCATTGG
GACAATAGTGATTCAGGAATAAGACCTGCTAATGCTGAAACTAAACGTTG
CAAGTTTTACTCTGATATGGTGGTTACATATTTGCCAACAGCAAAAAATT
ATAAGCCGCGAGACGTGATAAAAACGTTGCACAAACTATGGACGGTCAAT
ATTCATCTCAAACCTCGTGGCATTTCAACATTTAGAGGCTACACAAGTGC
TTTTTACGCAGTTGCTCCCATGGAAGGAGTTTTTCGGAGTGTGAAATATC
GAACGCCAAGTATTCTTTTTGAAAGCGGTACAACTAGATTACAGATGGCT
GCTATCCAAACTATCGAAGCAACTGCCAGTGCACCCATCAAAAATACACC
CATCAATACCCAGGTGGGGATATCTTTACCCCGTCGTTCAGATAGGTTCT
GCGAATACCGTGACGATGGCAAATTCGTATTCCCTTTGGATTGTAGGGGT
TATTTTATTTGTGATGGTGGGAAAGTCTCATTTGCTTCATGTCCTGAAGG
TGAACATTTTCATCCGAAACTTCGAAGGTGTGTTGACGAGAAGCAAAGTT
CATGTTTTTCAAAGATGCCGGTCCAATCAGGAATCACTCAAGGTCACCTT
ATTGAAACTATTAAGAAACTATATAACACATGGACACTCCAAATCACCTT
GCTCCCTCTTGGTATACGAGATAGTGACTCAAACATACTTCACGTCACGC
AATACTTAAACAGCGCGAGGGAAGGATTGTTGAAGTTGGATTTTATGGAC
GGCACTAGCCATTTGAGAATCTGTTCGCCTTCCATTACGTCAAAATCGTC
AAATGGTTGTATCATACTGTTTCGTCCGTTGGAAATCAATAAGTTGGTCA
CAATAACGATTCAAAGAAGACAAACAACAAAAGGCGGATATGATTTAGTG
ATTACCCTTACTGGGTCACAGTTTTTTTCGATCAGATTCAATGATGCTGT
ATCTCGAGTATTGGAAGATGTCAATGTATACGTGTCTGATTCGTGGATGC
CATCTGCAAATGCTGTACTGGATGCCTATCAATTTAGCACGAAAATAAAA
TGAGTTTGCGGAGTCTTGAACTATCCGAGCCCATCCACCTGTCAAACAAT
ATCAACACCACTACCTCTCAACAAATTCACCAGAGTACAAATTCAACAAA
TCCCAAATGGAGCTGACTCTAAATTCATCGTCAAATACAATAGGACAACC
ATGTGGATCGGGAAGCCGACAAATTTGCGAGCATTTCACAATGTTCTTGT
CTATCATTGGGACAATAGTGATTCAGGAATAAGACCTGCTAATGCTGAAA
CTAAACGTTGCAAGTTTTACTCTGATATGGTGGTTACATATTTGCCAACA
GCAAAAAATTATAAGCCGCGAGACGTGATAAAAACGTTGCACAAACTATG
GACGGTCAATATTCATCTCAAACCTCGTGGCATTTCAACATTTAGAGGCT
ACACAAGTGCTTTTTACGCAGTTGCTCCCATGGAAGGAGTTTTTCGGAGT
GTGAAATATCGAACGCCAAGTATTCTTTTTGAAAGCGGTACAACTAGATT
ACAGATGGCTGCTATCCAAACTATCGAAGCAACTGCCAGTGCACCCATCA
AAAATACACCCATCAATACCCAGGTGGGGATATCTTTACCCCGTCGTTCA
GATAGGTTCTGCGAATACCGTGACGATGGCAAATTCGTATTCCCTTTGGA
TTGTAGGGGTTATTTTATTTGTGATGGTGGGAAAGTCTCATTTGCTTCAT
GTCCTGAAGGTGAACATTTTCATCCGAAACTTCGAAGGTGTGTTGACGAG
AAGCAAAGTTCATGTTTTTCAAAGATGCCGGTCCAATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13765MSTRG.13765Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13765.1.p1MSTRG.13765.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13765.1.p1.exon4MSTRG.13765.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13765.1.p1.exon3MSTRG.13765.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13765.1.p1.exon2MSTRG.13765.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13765.1.p1.exon1MSTRG.13765.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:819190..824002 -