MSTRG.13757.3.p2 (mRNA) -

Overview
NameMSTRG.13757.3.p2
Unique NameMSTRG.13757.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:594146..601648+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13757.3.p2 ID=MSTRG.13757.3.p2|Name=MSTRG.13757.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7503bp|location=Sequence derived from alignment at sc0000111_pilon:594146..601648+ (Clytia hemisphaerica_ch_hm2_pilon)
gaatcagtttCAGATTCTATTTCCAACTGGTCTGGTTTGATTGATGATGA
CAATAAAGTCAAGGATTTTATCTCTAAGGTAAGCAAGAGCTAACTTGCTG
TAGTGGCGGTAGTGAGGACCAAAGGGCCTGCCTTACTAAGTAAAAAAGGC
TGCCCAAGTTAAGCTTGTAGACTAAACATTGTAATTTATGTCCAAATTGA
TTGGTTTGGACTTACTCTAGCCTACCCGTGCTAGGCTAAATGCGATGAGT
CAAGCCAAAGTTGAAGGGCTGGGACTTGATCTAAAGGCTGTAGAAATAAC
AAAGCGGTCTAACTTGTTTACTCACAATaattgccactaatttgtttatc
ttttcatCTCTTCAAGTATTACTTTAAAATTGTAACTAATTTCAATGTGG
TCTCAGTAGAAATTACAGGAAGCTTTCCTTGTATCATCTCACAATACATC
ATTGTACACTAGAAATCTAAAGTCAGCTTTAATTTAAGTAATTTGTTGGT
ACTTTATTGATCGATGTCGTACTTTACTTTTTTCTCCCTAGGTTTGTCAG
CTCATCGATTTTAtccaagaagaagaaaaacctACTGAAAAATTAAAGGT
TTCTTTCAATATGATCTTCTTTACAATTGAAATTGAAGTACATTAATTTT
GGGGCTGGCCCATACTAATGATCATACACTTCGAACGAGGATATCTaaaa
aaaTACGCCTTTCCAAGAGCTCGTACAGCTACTGTTGGAAAGAACAAGAA
ATTTTGAGTAAGATAGGTCAATTTGAGAGGCGCCATACCCGCTAAAACTA
TTTGTTGtgtgaaatatttgattttttttcaaaaggtgcATTGCTCTTGT
TAAGACTTTAATATATTTGTTTACTGTTGGAAAGaacaagaaattttaaa
tttggtaCAAATGTGtagaaaaacttgttttgatAGCTGAGAAACCAAAA
TAGAgctcatttgaaattttgaaaaattgtcttaaccctttccggacgca
ggGTCCACGGGTTGGCCCATACGTGAAAACGTCgtgcaaaatattttcta
aaagtgCATATCCTGgaaataaatattaaataataaatcttggagttgaa
tttaaaaaatgtgatattacaatatattttattgttcttttgtAGTTTCT
ATTCAGCTCATGCGAATCATTGGAAAGATGTTTTGGACTGATTTCTGCAG
ACCAATCATGGACTGTTGAAATCGTTTGCCAATGCTTAGCATTCTTCCTG
TTTATATTCAAGTTCTTTGAGGTTTGTGTACTATTTGTATTACTATGACA
CTCAGACAGAGCTTATTCTTTtgattcattttgattttcagtttgATGTA
AAAAAGAACGCAGTATTATGATTATGATTTCTATAACAATGGacaccaca
ctgaaacgaccgccggcaaaaattcatgtaaaaaaagcTTTGGGTATACG
GCTACATGTCATTTCCGAtacattttagaattttcatttaaaacagATTA
cattatagtcatttttcatgtctccaTCATTCAATTGCAAGTAAAAGAGA
TTTATgggagaaaaaagagaaaaaacctgggtaatctagttaaaaaaaac
gaaagtaaatggtTGACAAAGTAGTGAGCctaggcaaaacgagattaacG
TACCACTATTGAaaaaaccgcctccggcggttgAAAAtgcaattcaaaat
tttctctaaatttGTCTTCTCTAAAACCGTTTTATCTTTATTGCAATATT
GGTATAATTAAAGAGCAAGCTTTtcataattattttctttttaaattttt
atctaGGATTGCAAGAACAACAGTGCAGTGAATTCTATTGCAGAAGATCT
AGCAAAACTTTTCCAAACTGCTTATAAACATCTGAAGGTAATTAGATTGT
CCCCACTCGCTTCTTACTTCACTGTTTCACAATGATACAGCtttgtttga
cattttaaaGGACCAATTTTAAAGTATTGTATTCAATTGTTaactttgat
tattttgatttcgAATGTACTTGAGACGTTCGGTGTTTCAAAGTTTATGC
gtatgataaaaatatttaaaaaatttcctttctgctaaaaactacaaaat
actgttttctttttttcacagTTCGTTTCAGTCAAACTTGAGCACATTTC
TGAAACCCAATGGAACAAAGAtagaatacaattgaatcaaggTACATTAT
GTCAATACAATACAATTTAATCAAGGTACGTTATGTCAATACAATACAAT
TGATTCCATATTTATTCTTTTCTGTGGACATTAAGCTTAAATGTTAATGT
TAGGAATGCAGCTAAGAGTCATAAAGAATCATAAAAGTTAGTCTTCTGGT
AAGGTTTCTCACAGGCCTTCAGAgtttaaatgaaataaataaatttcact
CATATAGTTTGCATGTTAAACTCTCATTAGAGTCAATCAGATTGGTTTAC
AGAGGGTAGGTTTGCAGGCAGCTATGCTGCATATTATTACCCGATTTTTG
ACACTAAGATCTTTTGAGGGTTCGATCCTTTGAGAGGATGATGCAATGGT
GATGGTTTAATGTTTCAAACTGTTCTGTTTTCTAGCATACAAACTGTTGG
TGGAATGTTCATTAGTATTACGTCATCTAGACATCATGGCCTGCGTTCCT
ATCtggaaacaaatgaaaaagtaatgatttttatcTCTACGTTTCACATC
AATCTTTGATTCTATTTGTGTGTTAAATCCAAACTATTGATGatgtaaac
aaatgaaaaagttttgagtCACCGCTCAGAATTTTtctgaataatgattt
tgatttaaaaatcagtTATTTTTAAAACCGGTTAGGTTTCCTGCGATTAG
TTGCAAAAATCTTGACTAATAGGAAGTACCCTTGTTAAGGTGTGCCCAGA
TCTTCCATGATTATTGttgcaattgtaaaattgtgtACACTCTCTCCAGT
CTACGTTTCACACCAATCTTTGATTCTATTTGTGTGTTAAATCCAAACTA
TTGATAATGTAAAGCATTATAGCATTAAGCATAAAGGCTACTTGTGCGCG
CTGCGATCACACTTTTATGAACAAAGCTTCCACGTTATTGGTTTTTCCAG
CGCGGGCTAAAtctttatgacgtaatctttttccaagcaaaatggATTGA
AGCAAATGGTGTGATCAAAGCGTGCGCatgtggagaccggccttaagggt
aCGGTAACATCTCAGTGGTCActttacaaaagattctattatTATCGCTT
TTAGtggtttcttttgaaaaacgGTTTTCATTGAAAGTATCTTCAAAGTG
AGCTTCATTAAtgtaaacttgaaaatttttgttatcaaaacCTTAACATA
TAAAATCATTCCACTCTCTCTTTTAGGATAATATTAAGGCAACCATGTAC
TGAAATAGATGACGACAATTCCTTCATTGTACCCTCATTCTTTGATTCAT
TCATTTTATCAATACATGCAGTTGAACAGTGGATTGACAGTTTTATACAG
gtttggaatttttcaaaatagatttgatttgttgatgactttcaaaaatt
ctaaaaaatcgtTCTATTAAAGAGTCTTTTTCGTGATGTCATACAACACT
TTTTTAGCCAATCAAGCAAAATCGATCTTTTAAATGAgtcaatttctcaa
atttttaaatatctttaaacgttttttagaattttcttaaGATTGCGTTG
CTTTGTaaaattaaaatagaaaatacGGTATGCAAttaaatttaaagttt
aaatcAAGCACAtgcagattttcaatttttcccgGATAAAACACTAGCTT
TTAAAAAAAGGCTCTTAGGTAAAGCTAAAAATTTGAAAAGTCCCTAAGAA
AATGAAAGAAATCGCAAAACCGCAAAACCGCAAAATTAAAGCCTGCTTAA
TGCAATTTTTATAATTGTTTTTTTCGACCGTGAATATTAGTTCCAAATTT
CCTTCACCACCTCCACTATAATTTTCTTCTTAGGGTGACATGGAGATGGC
AAGAAGATCAGAGAAAGTCTCAAAGTTCATGATGAGTTTGAACTTACAAA
TATTAATAGTAAGGCTCTTCATTTTTAATTGGTACTATTTTTCAGGAATA
AAAGTTACTTAAAAGTTACTTAAAGTTACTAATATATTAAAATTGAGTTC
TCAAATACATGTTTTAAAATGTTATATAAAACTTGAGTTCATTTTTCTGG
TGTGCACCATTTTTGGCTTACACATAAATCAATGCTTAAAAGCTTTATTA
AAATTGCTTGATTTGGTTTTCTATATACATCATTTGactgtttttcttaa
aaattgaagtttTTGCCACATGAAAATGctaacaaagttttattttgcaA
TTTCAGGTATACAAAGAAAAAGCTGGTCGGGATGATTGTAAAAAAGTACT
CAATCTTCTTATAAAGCTAAAAAGGTTTGTTGACAGTCAACGACGCTTAC
CTTTCTTTTAAGCATACCtggtattttattttattcagtaAAGACACACC
CTTCAGGTAGGATTTTTCAGCTAGTTTGGGTAAatataacggaccaaaac
ttgATGAGGATTGATATCCCCATGTTATctatgactggggatttgagttt
tgaaaccagaaaattctgtggggatggaaaaagtaacacaatattttgca
gtgaggattcgCTCATCTGGTTATTCTTAGCGGTGACAAAAATCAGAGTA
TAATtttcactggggacgatattttgaccaatctttccagtgggaaagga
tcccagtgggtctgtgagaaggggatgtgtAAAGatgatcaaatttaatt
tagtCTCACTGATACTTTCTAACACTATCGAATTTGGTTTTTGGGAGTTC
CATTTATTAATATTTGatagaaaataattttgccTTCTTAAgagaaaatt
atctttttttaaattcattttagaATTATTCAATCTCTTCTACTTACTAT
GTATTTATCCTCAACAACATTCTAGTAACTTGTGGTgacaaagtgctcta
taccaagcgagagctaaattcaaaatcaaaattatcaattaaTTGTTATG
TATTTATTCTCTGGTTTTTCATTTCAGCTCAGATATTCAACTCAAGCAGA
TTCCATCAAATGTTGATGGTACGAAAGTTGTTGAATATTTCACTGCAATT
GTAAGAACTATCAATTTATTTGCCCTcgattccagaaaatttttgtacat
ggggggtgtatagcaatgtgccctcccggttattaccataatggctttat
ggcaactcctgaacttgggcacaggatgtacggttgtacatggggggggg
tggaggatttattggatattttgtccgggggtagtgaaaaatctgtaaaa
tttgcATTGTTTTAGTGGAaaacttgctctgattagggatgattttgaat
gtccaggggccagctgtcaaaattcacaatgtccgaggggggggggtaaa
tgtcgaaaaaatgttatatcctccaccccccatattcaaattttttctag
aaGACCCCTTTGTAGATATTTAGacttatcaaaatcaattctcCATGTTT
GGTAAACCCTGATAAGCTGATTTATGCATTAAATTGTTAAGATTTTAATG
GAAGATCGAtgtttttagtgaaaaaaataTCGGCTGGCATAAAAAGAGCC
AAAAAGTATTAAGAAAGGACCTCTATCTGTCAATGATATTTTCTGGATTC
TTAAACTTAGATCAAACCAATGATGACAGAATTCATCCAAATGTCCGACG
CCCCATCTTCATTCAATGGTATGAAAATTCTGGCAGGAGAAATAAATTTT
GGGATTTGGGATGTTATACCCAAAGAATTTTTTAGCAAAACTAAATTTTA
GTTCCTTAAATTAAAGCAAATACTGGCAAACAGACATGATGTATGTACAG
GTTCTGCTAACTTTGATAACAAATTCTGGCCGAGAATATCCTCCAACCAC
CAACTTCAATATTTCCATATAAATTTACTTATCCCTAGTAGATTCCAGTA
AAAATTTAAGTAATTTCACATTCATTCACTTATTCTacctctattcatga
tatgcaccattgcaatgtcttccgttccacccagtagctgattggttcaa
agtgacgtattgactgattttacgtcactttcaaccaatgagctactggg
tggaacggaagacattgcaatggtgcatatcatgaatatagcTTTATGCT
TCTATGGAAAGTAAGATAAATTTATCTAGAAAATCCCACGCTCGAACCTG
TATTGAATCCAAAGATTAATTCTcctattttctttacttcaggTTTCCTA
GAAGACATAACAAGCGGTGATTCTGGAAACACAACACTTTCAATTACACC
AGAAATTCTTAGCGCCCTTGCATCTTGTGAAAACACTCACACAATAAAAA
CATGGATGGATCCCACTGATAGCCGAAATTATAATAATTCCATCTTAAAG
ATGATGATGGGAAAATTACTTCATGAGTTTGAACACAGTATTCTCTTTCG
TGGTAATTCATTATATGAAGACCTTTTGGTGAACATGTGTTTCTTTGTTG
CTATGCTACCTGGAGAATATTTCAATCACTTGGTTTGTATTATAACAATA
TTAATTATATTTGCTaatttattcttgatatgcgtaagtcattttccCAA
CGGAGACACCTTAAAAAACTGAGATTTGATCACTGCCTgctactaaaaat
agaaacacagtgCCAGTGGTCAAAATCCGCTGCACAACATACTTGATTAG
TTTTATTTTCATAGCTTGTAGACACAATTTTTAGGTGACCCTTAAGAATA
ATATGGCCCCTAGCATTTATCTAGTTGAAAATACTTCAGGCGACCCCTTC
AAGTTGTCATCACGAGTTTGTGTAATTGGGCCAGGAAAAACTGGTCCAAC
TTTTTGTGTTAGAAAATCTTTTAACCCTTTGGGATTCAGGGTACTTTTAG
GTTTTTAACCCCActgaaattcttaattttcaaaaaatttaaagaattgg
CCATATAGAATTCTTGTCACTTGTGctggtttttttttgtattcccTATG
GAATTTCAATTATAAGGATTCCCAACAGGGTATATGGGTTTTGGGGAAAT
CTCCTTTGAGGGGCAGAATGGAAAAGTGAAAGTTTATGTTCGTACTTTTG
CACTGCAATCAATTATGTTTGTTTTACACAGCCtaaaattttttctctaa
aaacgGGAGGATTCAAGCCATGATTTATGACCACTTGATTATTTTCTATA
ATTGGTAATATGAAATAAACGCAAACTATTCaaaaaaaGCATCCTGTTCA
TTGTCGAGATAAGTCAGAACTTGATCCTTTTCGCCTCaatcattttaaaa
gaaagagacCCTTCTAAATATTATGATTATACTAATTTgtgaactttcat
tttcaatttcattttaggaAGAAACATTGTTGGACAATCTTTTGGGAAAT
GAATCATCACTAACAGCTCTGTTTGTTTCTGATGTTTGGTGCTTCGTGAA
CCG

Coding sequence (CDS) from alignment at sc0000111_pilon:594146..601648+

>MSTRG.13757.3.p2 ID=MSTRG.13757.3.p2|Name=MSTRG.13757.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2205bp|location=Sequence derived from alignment at sc0000111_pilon:594146..601648+ (Clytia hemisphaerica_ch_hm2_pilon)
gaatcagtttCAGATTCTATTTCCAACTGGTCTGGTTTGATTGATGATGA
CAATAAAGTCAAGGATTTTATCTCTAAGGTTTGTCAGCTCATCGATTTTA
tccaagaagaagaaaaacctACTGAAAAATTAAAGTTTCTATTCAGCTCA
TGCGAATCATTGGAAAGATGTTTTGGACTGATTTCTGCAGACCAATCATG
GACTGTTGAAATCGTTTGCCAATGCTTAGCATTCTTCCTGTTTATATTCA
AGTTCTTTGAGGATTGCAAGAACAACAGTGCAGTGAATTCTATTGCAGAA
GATCTAGCAAAACTTTTCCAAACTGCTTATAAACATCTGAAGTTCGTTTC
AGTCAAACTTGAGCACATTTCTGAAACCCAATGGAACAAAGAtagaatac
aattgaatcaaggTACATTATGTCAATACAATACAATTTAAgaatcagtt
tCAGATTCTATTTCCAACTGGTCTGGTTTGATTGATGATGACAATAAAGT
CAAGGATTTTATCTCTAAGGTTTGTCAGCTCATCGATTTTAtccaagaag
aagaaaaacctACTGAAAAATTAAAGTTTCTATTCAGCTCATGCGAATCA
TTGGAAAGATGTTTTGGACTGATTTCTGCAGACCAATCATGGACTGTTGA
AATCGTTTGCCAATGCTTAGCATTCTTCCTGTTTATATTCAAGTTCTTTG
AGGATTGCAAGAACAACAGTGCAGTGAATTCTATTGCAGAAGATCTAGCA
AAACTTTTCCAAACTGCTTATAAACATCTGAAGTTCGTTTCAGTCAAACT
TGAGCACATTTCTGAAACCCAATGGAACAAAGAtagaatacaattgaatc
aaggTACATTATGTCAATACAATACAATTTAAgaatcagtttCAGATTCT
ATTTCCAACTGGTCTGGTTTGATTGATGATGACAATAAAGTCAAGGATTT
TATCTCTAAGGTTTGTCAGCTCATCGATTTTAtccaagaagaagaaaaac
ctACTGAAAAATTAAAGTTTCTATTCAGCTCATGCGAATCATTGGAAAGA
TGTTTTGGACTGATTTCTGCAGACCAATCATGGACTGTTGAAATCGTTTG
CCAATGCTTAGCATTCTTCCTGTTTATATTCAAGTTCTTTGAGGATTGCA
AGAACAACAGTGCAGTGAATTCTATTGCAGAAGATCTAGCAAAACTTTTC
CAAACTGCTTATAAACATCTGAAGTTCGTTTCAGTCAAACTTGAGCACAT
TTCTGAAACCCAATGGAACAAAGAtagaatacaattgaatcaaggTACAT
TATGTCAATACAATACAATTTAAgaatcagtttCAGATTCTATTTCCAAC
TGGTCTGGTTTGATTGATGATGACAATAAAGTCAAGGATTTTATCTCTAA
GGTTTGTCAGCTCATCGATTTTAtccaagaagaagaaaaacctACTGAAA
AATTAAAGTTTCTATTCAGCTCATGCGAATCATTGGAAAGATGTTTTGGA
CTGATTTCTGCAGACCAATCATGGACTGTTGAAATCGTTTGCCAATGCTT
AGCATTCTTCCTGTTTATATTCAAGTTCTTTGAGGATTGCAAGAACAACA
GTGCAGTGAATTCTATTGCAGAAGATCTAGCAAAACTTTTCCAAACTGCT
TATAAACATCTGAAGTTCGTTTCAGTCAAACTTGAGCACATTTCTGAAAC
CCAATGGAACAAAGAtagaatacaattgaatcaaggTACATTATGTCAAT
ACAATACAATTTAAgaatcagtttCAGATTCTATTTCCAACTGGTCTGGT
TTGATTGATGATGACAATAAAGTCAAGGATTTTATCTCTAAGGTTTGTCA
GCTCATCGATTTTAtccaagaagaagaaaaacctACTGAAAAATTAAAGT
TTCTATTCAGCTCATGCGAATCATTGGAAAGATGTTTTGGACTGATTTCT
GCAGACCAATCATGGACTGTTGAAATCGTTTGCCAATGCTTAGCATTCTT
CCTGTTTATATTCAAGTTCTTTGAGGATTGCAAGAACAACAGTGCAGTGA
ATTCTATTGCAGAAGATCTAGCAAAACTTTTCCAAACTGCTTATAAACAT
CTGAAGTTCGTTTCAGTCAAACTTGAGCACATTTCTGAAACCCAATGGAA
CAAAGAtagaatacaattgaatcaaggTACATTATGTCAATACAATACAA
TTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13757MSTRG.13757Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13757.3.p2.exon1MSTRG.13757.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon2MSTRG.13757.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon3MSTRG.13757.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon4MSTRG.13757.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon5MSTRG.13757.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon6MSTRG.13757.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon7MSTRG.13757.3.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon8MSTRG.13757.3.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon9MSTRG.13757.3.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon10MSTRG.13757.3.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon11MSTRG.13757.3.p2.exon11Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon12MSTRG.13757.3.p2.exon12Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13757.3.p2.exon13MSTRG.13757.3.p2.exon13Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13757.3.p2MSTRG.13757.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:594146..601648 +