MSTRG.13727.1.p1 (mRNA) -

Overview
NameMSTRG.13727.1.p1
Unique NameMSTRG.13727.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:183273..186063+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13727.1.p1 ID=MSTRG.13727.1.p1|Name=MSTRG.13727.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2791bp|location=Sequence derived from alignment at sc0000111_pilon:183273..186063+ (Clytia hemisphaerica_ch_hm2_pilon)
gcttgcCAATCcataaatatctttcaaaactttcaaaactttcaaaacgt
TCGCAGGGTTAAAACATCATATAAATACACTACAGATTTTTCTGTGCGAG
TATGATGCTATTGGTCAATTTTACCatattgacaattttttgtGATGACG
TTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGTAAATGTGC
CAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatgatcaAC
CTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGTTTTGGTCAATGT
GTTTACAACAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGCTCCTCG
AAAAGTCGAATGtcgattgtttgattttactcacAGTACAACTTTGGTTG
AGAAAGTTGGGGCGAAGCTACATTCAAAAGTCATTTACAAAAACTGTCTA
GAATATTTCAGAGCAGGTTATATAAAGAACGGagtttacaaaataaattt
gttaGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGGGCGGAG
GTTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAATTTCATTTGAAGAT
AAAGGATGGGTGGAATATAAGGATGGATTCGGAGATGGGTCAGGTGAGAT
AAAGTAATCTTTCTCTATTGGCGAATTTGTATTTTATAACTAGCTAGAGT
CGAGTCACCTGTATGTTACACCTACAAAAACAGCATTACACGTCTTTTGT
GGTAATTACTTGGGGTGCACTGTTCATGTATGTAAAATAGCTGTAGAGCC
AACTTCATCAAAGTCAACCCTAATGCTTATGTtcattatttcttctttta
taggAGAATACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAG
CAATCTTATGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGA
GAGCAAACGATTCGCCGGTTTCACCATCGGTCCTGAGGAGCCAGAGAAAT
ACAAATTCGACTACCACTCTGTTTATGATGGAAACCAATATAGCtctttg
gaacttttttccaacTGCAAAGGCATGAAATTCTCAACAAAGTTACATGA
TAATGATGCTGATGCTCGCAACTGCGCCATAGTTTATCCAGGAGGTGAGT
ATAATACTTTTGGTTTTTAACGTGGTATTAATTGGTAGAGATAACATACT
TTTCTGGTGATTAATTTGAAATCGCGTTtgctttttgcctgaaaacgata
acaaaaacaaaaacgattTAGCGACAGCGATGGGTcctaatgtttatgtt
tttgataaaacagtGGACTTTTGTAGCGAtttttttACTTCAGCACCTTC
ATCACCGCGCTCAAAGACTTAGTTTGTATTCATTCAAAATCTAGAAGGAC
ACCGTTTGTGACTACCAACTTTGGCTGTAATGAGTAATCAGGATCTACTT
GCCTTGGAGATTatgtataccttatcggcccttattGGCGCCGCTGGCGT
AATAAGACTAAGAGCCGGCGTTAGGGATTTAAATTAGATTAGAGACCCGG
GTCGAAAGGAGGAAAAATTGAACTTTGGCGTTATAAGGGCCGACGTAAAA
GAAGCTGGTCCCAAATTAGGACCGGTgtaaaagggccgataaggtaaatt
GTTTCACTCTTAAAGAAGCGAATGACCATGTTTTTAACATGTCTTGTTTT
AGGTTGGTGGTATAAAGTATGTCATGCGGATCTTATGAATGGGAAATATT
CACAAACAAGTGTTTGTGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAA
GCATTTACAGGTCATGGGCAATGTTTGAAAGAATCTCTTTTAATGATAAG
ACCAAATTAAAGGACATCATTTTGTATCgcatctcctaccatttgcttac
aaatcatttttggatatctgcatttttaaacaaaagaaataaaactttCT
CTTCCTTCCGCCCCGCgcgagcacaaattttgagTGAAACTTTTGTTAAC
Acgcttttttctttataagaatatttatgatgaaattggccaaaaaatta
agaatatgttgGGAATAACACCCAGGAATTTAGTAACTTAATCTatgaat
gccatttttagagtattttccCATTAAactgccaatttttttcccAGCAT
TGCTTAAAGGTTCTACAATTGTTTTGTTaaggtatgtattacatgctaga
ttttggctgggattggatccaaacctaagaataccgtagaatatttcagg
atgattttccccaaataGCTAAGAATATTTATGctgaattgaaaaaacac
catattcttataaaaaagcgtgtattctgcTTTATCAGCACAAGAGGCAC
ACCCTCTTTCTATGTCATAAAAATAATACAATTGAGTCtatttaattcga
acctcttaACTCGAATGTCCCCTTTAACACGAACAAGTTTTTTAGCCCCT
ACAGTTAACAATTGCACATAGACCATAActtaatattttcttaaatcgaa
caaatttgagTCTCCAGTGTGTGTTCGAGTTGTTGTGTCTCAAGTGTTCT
TGAGTTGTGGAGTCTTCAGTGTATCTTCAATATCTTTTATATTTCGATTG
GTATTTTTCGTCTTTTCTACAGAAATCAAAAAAGCTTCTTTGatattcaa
aagtttaaaataatcaaaatgcacaggtttcgaattttgattcgacacga
aaaaaatatttatcgaATTCCATTGAATCGAATTAATTATCGAAGAGTAA
AACTAATCCAAACTCGTGTTTTacattgtaaataatttttt

Coding sequence (CDS) from alignment at sc0000111_pilon:183273..186063+

>MSTRG.13727.1.p1 ID=MSTRG.13727.1.p1|Name=MSTRG.13727.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000111_pilon:183273..186063+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACGTTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGTAA
ATGTGCCAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatg
atcaACCTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGTTTTGGT
CAATGTGTTTACAACAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGC
TCCTCGAAAAGTCGAATGtcgattgtttgattttactcacAGTACAACTT
TGGTTGAGAAAGTTGGGGCGAAGCTACATTCAAAAGTCATTTACAAAAAC
TGTCTAGAATATTTCAGAGCAGGTTATATAAAGAACGGagtttacaaaat
aaatttgttaGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGG
GCGGAGGTTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAATTTCATTT
GAAGATAAAGGATGGGTGGAATATAAGGATGGATTCGGAGATGGGTCAGg
AGAATACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAAT
CTTATGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAGC
AAACGATTCGCCGGTTTCACCATCGGTCCTGAGGAGCCAGAGAAATACAA
ATTCGACTACCACTCTGTTTATGATGGAAACCAATATAGCtctttggaac
ttttttccaacTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAAT
GATGCTGATGCTCGCAACTGCGCCATAGTTTATCCAGGAGGTTGGTGGTA
TAAAGTATGTCATGCGGATCTTATGAATGGGAAATATTCACAAACAAGTG
TTTGTGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAAGCATTTACAGGT
CATGGGCAATGTTTGAAAGAATCTCTTTTAATGATAAGACCAAATTAAAT
GACGTTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGTAAAT
GTGCCAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatgat
caACCTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGTTTTGGTCA
ATGTGTTTACAACAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGCTC
CTCGAAAAGTCGAATGtcgattgtttgattttactcacAGTACAACTTTG
GTTGAGAAAGTTGGGGCGAAGCTACATTCAAAAGTCATTTACAAAAACTG
TCTAGAATATTTCAGAGCAGGTTATATAAAGAACGGagtttacaaaataa
atttgttaGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGTTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAATTTCATTTGA
AGATAAAGGATGGGTGGAATATAAGGATGGATTCGGAGATGGGTCAGgAG
AATACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAATCT
TATGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAGCAA
ACGATTCGCCGGTTTCACCATCGGTCCTGAGGAGCCAGAGAAATACAAAT
TCGACTACCACTCTGTTTATGATGGAAACCAATATAGCtctttggaactt
ttttccaacTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAATGA
TGCTGATGCTCGCAACTGCGCCATAGTTTATCCAGGAGGTTGGTGGTATA
AAGTATGTCATGCGGATCTTATGAATGGGAAATATTCACAAACAAGTGTT
TGTGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAAGCATTTACAGGTCA
TGGGCAATGTTTGAAAGAATCTCTTTTAATGATAAGACCAAATTAAATGA
CGTTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGTAAATGT
GCCAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatgatca
ACCTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGTTTTGGTCAAT
GTGTTTACAACAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGCTCCT
CGAAAAGTCGAATGtcgattgtttgattttactcacAGTACAACTTTGGT
TGAGAAAGTTGGGGCGAAGCTACATTCAAAAGTCATTTACAAAAACTGTC
TAGAATATTTCAGAGCAGGTTATATAAAGAACGGagtttacaaaataaat
ttgttaGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGGGCGG
AGGTTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAATTTCATTTGAAG
ATAAAGGATGGGTGGAATATAAGGATGGATTCGGAGATGGGTCAGgAGAA
TACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAATCTTA
TGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAGCAAAC
GATTCGCCGGTTTCACCATCGGTCCTGAGGAGCCAGAGAAATACAAATTC
GACTACCACTCTGTTTATGATGGAAACCAATATAGCtctttggaactttt
ttccaacTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAATGATG
CTGATGCTCGCAACTGCGCCATAGTTTATCCAGGAGGTTGGTGGTATAAA
GTATGTCATGCGGATCTTATGAATGGGAAATATTCACAAACAAGTGTTTG
TGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAAGCATTTACAGGTCATG
GGCAATGTTTGAAAGAATCTCTTTTAATGATAAGACCAAATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13727MSTRG.13727Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13727.1.p1MSTRG.13727.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13727.1.p1.exon1MSTRG.13727.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13727.1.p1.exon2MSTRG.13727.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13727.1.p1.exon3MSTRG.13727.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:183273..186063 +