MSTRG.13665.2.p1 (mRNA) -

Overview
NameMSTRG.13665.2.p1
Unique NameMSTRG.13665.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000110_pilon:24842..27538+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13665.2.p1 ID=MSTRG.13665.2.p1|Name=MSTRG.13665.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2697bp|location=Sequence derived from alignment at sc0000110_pilon:24842..27538+ (Clytia hemisphaerica_ch_hm2_pilon)
attccgatgcatcggagggcatatcaatctatctatctatctaaatGGAA
AATTAATTGTAATCTGATTAAAACTatttcaatttcatattttagaTTCA
ATCCTAATGTGACATCTTCAGCAGAAAAATCTGAGACAAGAAGAAAGAAT
GAATCAACGTAAGAAACTGATCTTTATTTAAATCAAGTTCTGAATCAAGA
TTAAAAACTTGTCCAGCTTTCTATAAAAcaatgctttttttttaaatcat
caaaataaaataaagtgtTGTAACCATTGACTAGACCTGGAACTCTTGTA
TGGGAAATTAAGTTACTTATTTCCAGTAAAAATGCATGACCCGTGTGGTT
TTTGCACAAACGCCAGATAGGAAGTAAACTTTAGATTTTGGGATTGTTTG
TGGTGTTAAATGGTCAATTCGCTTGTAAGACATTTCTCAGAGTTGTTAAA
TGGCTTTACATTTAACATGCATGTAGTTGTCTTACTTTTACATGGCAAAT
CCCAGCCTGAAATTTGGCACTCATATgaatatgaaaatgattttacaCAC
GTATGTAAAAATGAATGCACACATGTAAAATGCATTTAAGAACCTGAATT
TTAAAACCCATGGGTTTAAAATGTAATTTCTCCACCAAAATAGAATAAAA
GTAGTTAAAAGGTAGcctaattttcagaaaacaataGTCACTTATcaaac
ttatttcttttgttttatgaacAAACAGGCAATTAACTCAAGGCAAATTT
CAAATGACTCAGTATGgttcactttttaaaaacagctaTATACCTACTTT
AATTATAGGAGCAGAAGAAAATTACCTCTTTCAGAAATTAACGGAAACTC
GAAATCGCAAAGGAAAACCAAAGCTATTGCTCTTCCACTTGAAAAAGATG
AGAGGAAGTTAGCAACACGTCAACGTCAAATTGATATTGGCAAAAATACT
GTTGGATACAAATTGTACACAGAAGATGTTAAAAGGTAAGGGATCCGTCT
AATCTTAAACCAATTTTTAAATCCGTTTCAtaaccaaaataatttaaaaa
aatttggtcATATATTTATTAAGGACATTCGGATATTCAAACAGTTTATT
CATCAATTTCCCCTATTGTTCATGGAATAATTGATGACGCTGTATATCAA
CAACTTTTCTAATAATACAGAATGTTTGTCTCTCGcgttgttttgatgct
ggattAATTAGATAAATATTCATTATCGTTAGCAAAATGTCAGTTCACGG
TTATTTGAAATCTTATTTTCCAAATTAGGCTTGAACAGTTGATTTACAGT
CCTATTAGAATAATTTCAGTGTAATGTCTTTGTTCTTTTAGAATGGATCG
AACAACTGACCACCCTTGGACGCCTAACAAATTTACAGTGTGTAGTACAC
GTTCATGGCAAGGAACAATGAGAATCTGGCGACGTAAATTACATTATTGG
GATCCAACAGAGATGAAAAATGATAAAGATACATTCTTTGATTCCACTTT
AAAGTATGGATTTAAATTATATGATTACAAAATGTGTTCTCATTTATGAT
GCTATTATTCTATAAGTATTCATACTCCGAGTAATCCTTGCAATGTTATC
CAGTAGACCTTTGATTGGtctaaatttgttttattataaaTTAGGAATGC
ATTactagttttcaaaaaatttattcttaaaaaaaacctttagtCACACC
CATTTGAATGTTTACGAATTCTTtaaaatagatcttatcggagtttttta
tttttctaaaaaagcgatgtattgtttcgggggtattacaatagaaatct
ctcgAGGGAAtttattgtaatacccccgaaacaatcccacaatgcatcgc
tgttttagaaaaatcaaaaactccgataaggtctatttagtAATGcatta
gttttcaaaaatttaattctaaaaaaacaacctttaGGCACACCCATTTG
AATGATTACGAATTCTTTGTGTCTAATTTACCTGAAACTCCTACtttttt
tCAGTACTATTGAAACCCAAAAGAAATCAATCGACCACAGTATGGAACTT
GACGATTGTCCTTCATCAGAGAGTAGCCAAGCCAGTTCAAATGATGATTT
ATTTGATGGACCTCCAAAAAGTGATTCATGGTATCAATCCAATGAAGATA
TTTTCAAGATTAAatatgaagatgaagaagaacaaTACCTTTATCAACAA
TGTTATTGAGATCTGCGTCTTCTGGTGGTTCTGGTTAGCTTTCAATATTA
ATTGTGTACAATATGCTTCTCTGAAAACTAAACTCATTTGAACTGAAGTT
TCGACTAATAATGACTTgctctcaaaattttaaatttctttttatcattt
tatcgtgttttattttttgcttttgtatATAATAATTCTCACAGCGATTT
TCTTCCGTAACCTTTACGATTTAATATTTTATCTTGAGTATGCTGTATGT
TTGTTTGGATAAACTAGCTTAAAACTGAGCCCAATTCGCTAAATTTTGTA
CGCTTCAAATATGGCCTCACTTTACGTAGGTTTCGATCGACTACTTACGC
TTTTTACGGTCAAGGTATGAGCTTTTTAAGTCggtctttgtttttctttg
tattttagaATGTAAATAGCTGATAGTGTATATATTCATTTTTTCCAAAG
AGACTTATTTGACTTTATCCGAAAATGTATATTGACAATAAACTGAA

Coding sequence (CDS) from alignment at sc0000110_pilon:24842..27538+

>MSTRG.13665.2.p1 ID=MSTRG.13665.2.p1|Name=MSTRG.13665.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2808bp|location=Sequence derived from alignment at sc0000110_pilon:24842..27538+ (Clytia hemisphaerica_ch_hm2_pilon)
attccgatgcatcggagggcatatcaatctatctatctatctaaatGGAA
AATTAATTGTAATCTGATTAAAACTatttcaatttcatattttagaTTCA
ATCCTAATGTGACATCTTCAGCAGAAAAATCTGAGACAAGAAGAAAGAAT
GAATCAACGAGCAGAAGAAAATTACCTCTTTCAGAAATTAACGGAAACTC
GAAATCGCAAAGGAAAACCAAAGCTATTGCTCTTCCACTTGAAAAAGATG
AGAGGAAGTTAGCAACACGTCAACGTCAAATTGATATTGGCAAAAATACT
GTTGGATACAAATTGTACACAGAAGATGTTAAAAGAATGGATCGAACAAC
TGACCACCCTTGGACGCCTAACAAATTTACAGTGTGTAGTACACGTTCAT
GGCAAGGAACAATGAGAATCTGGCGACGTAAATTACATTATTGGGATCCA
ACAGAGATGAAAAATGATAAAGATACATTCTTTGATTCCACTTTAAATAC
TATTGAAACCCAAAAGAAATCAATCGACCACAGTATGGAACTTGACGATT
GTCCTTCATCAGAGAGTAGCCAAGCCAGTTCAAATGATGATTTATTTGAT
GGACCTCCAAAAAGTGATTCATGGTATCAATCCAATGAAGATATTTTCAA
GATTAAatatgaagatgaagaagaacaaTACCTTTATCAACAATGTTATT
GAattccgatgcatcggagggcatatcaatctatctatctatctaaatGG
AAAATTAATTGTAATCTGATTAAAACTatttcaatttcatattttagaTT
CAATCCTAATGTGACATCTTCAGCAGAAAAATCTGAGACAAGAAGAAAGA
ATGAATCAACGAGCAGAAGAAAATTACCTCTTTCAGAAATTAACGGAAAC
TCGAAATCGCAAAGGAAAACCAAAGCTATTGCTCTTCCACTTGAAAAAGA
TGAGAGGAAGTTAGCAACACGTCAACGTCAAATTGATATTGGCAAAAATA
CTGTTGGATACAAATTGTACACAGAAGATGTTAAAAGAATGGATCGAACA
ACTGACCACCCTTGGACGCCTAACAAATTTACAGTGTGTAGTACACGTTC
ATGGCAAGGAACAATGAGAATCTGGCGACGTAAATTACATTATTGGGATC
CAACAGAGATGAAAAATGATAAAGATACATTCTTTGATTCCACTTTAAAT
ACTATTGAAACCCAAAAGAAATCAATCGACCACAGTATGGAACTTGACGA
TTGTCCTTCATCAGAGAGTAGCCAAGCCAGTTCAAATGATGATTTATTTG
ATGGACCTCCAAAAAGTGATTCATGGTATCAATCCAATGAAGATATTTTC
AAGATTAAatatgaagatgaagaagaacaaTACCTTTATCAACAATGTTA
TTGAattccgatgcatcggagggcatatcaatctatctatctatctaaat
GGAAAATTAATTGTAATCTGATTAAAACTatttcaatttcatattttaga
TTCAATCCTAATGTGACATCTTCAGCAGAAAAATCTGAGACAAGAAGAAA
GAATGAATCAACGAGCAGAAGAAAATTACCTCTTTCAGAAATTAACGGAA
ACTCGAAATCGCAAAGGAAAACCAAAGCTATTGCTCTTCCACTTGAAAAA
GATGAGAGGAAGTTAGCAACACGTCAACGTCAAATTGATATTGGCAAAAA
TACTGTTGGATACAAATTGTACACAGAAGATGTTAAAAGAATGGATCGAA
CAACTGACCACCCTTGGACGCCTAACAAATTTACAGTGTGTAGTACACGT
TCATGGCAAGGAACAATGAGAATCTGGCGACGTAAATTACATTATTGGGA
TCCAACAGAGATGAAAAATGATAAAGATACATTCTTTGATTCCACTTTAA
ATACTATTGAAACCCAAAAGAAATCAATCGACCACAGTATGGAACTTGAC
GATTGTCCTTCATCAGAGAGTAGCCAAGCCAGTTCAAATGATGATTTATT
TGATGGACCTCCAAAAAGTGATTCATGGTATCAATCCAATGAAGATATTT
TCAAGATTAAatatgaagatgaagaagaacaaTACCTTTATCAACAATGT
TATTGAattccgatgcatcggagggcatatcaatctatctatctatctaa
atGGAAAATTAATTGTAATCTGATTAAAACTatttcaatttcatatttta
gaTTCAATCCTAATGTGACATCTTCAGCAGAAAAATCTGAGACAAGAAGA
AAGAATGAATCAACGAGCAGAAGAAAATTACCTCTTTCAGAAATTAACGG
AAACTCGAAATCGCAAAGGAAAACCAAAGCTATTGCTCTTCCACTTGAAA
AAGATGAGAGGAAGTTAGCAACACGTCAACGTCAAATTGATATTGGCAAA
AATACTGTTGGATACAAATTGTACACAGAAGATGTTAAAAGAATGGATCG
AACAACTGACCACCCTTGGACGCCTAACAAATTTACAGTGTGTAGTACAC
GTTCATGGCAAGGAACAATGAGAATCTGGCGACGTAAATTACATTATTGG
GATCCAACAGAGATGAAAAATGATAAAGATACATTCTTTGATTCCACTTT
AAATACTATTGAAACCCAAAAGAAATCAATCGACCACAGTATGGAACTTG
ACGATTGTCCTTCATCAGAGAGTAGCCAAGCCAGTTCAAATGATGATTTA
TTTGATGGACCTCCAAAAAGTGATTCATGGTATCAATCCAATGAAGATAT
TTTCAAGATTAAatatgaagatgaagaagaacaaTACCTTTATCAACAAT
GTTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13665MSTRG.13665Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13665.2.p1MSTRG.13665.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13665.2.p1.exon1MSTRG.13665.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13665.2.p1.exon2MSTRG.13665.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13665.2.p1.exon3MSTRG.13665.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13665.2.p1.exon4MSTRG.13665.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000110_pilongenomesc0000110_pilon:24842..27538 +