MSTRG.13663.1.p1 (mRNA) -

Overview
NameMSTRG.13663.1.p1
Unique NameMSTRG.13663.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000109_pilon:1136004..1140289+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13663.1.p1 ID=MSTRG.13663.1.p1|Name=MSTRG.13663.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4286bp|location=Sequence derived from alignment at sc0000109_pilon:1136004..1140289+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAGTAATATGGATATGATGAAAGTAAAACTATAAATtcgaaatgtttaa
aaatgtcattcacaaatacagACGCAATTGCGGAACAGTGGGACGTGTGG
CAATTTCTAACTTCTTGATCGAATAGTACAGTAAGATCTGTGGTGTGAAA
TACAAAAAGCAAAATCTGTGATCCAAGTTTTTTCTACGATGCATTCAAGG
TGAGTACTGtactttgagattttttttatataatttttcataattatcaa
gaaaatttagaaattgcaATCTAATAGAACACCCTTGTGTcacatgttta
aaaattgcactccaataCCATCCCGACTGGATTTTTAACCCTTGAACAAT
GTAATtcttatccccattgggatttttaTATCCGCTGGGGAACTGAGGAG
AAAAGTTTTACCGGGGAAggctgtgagacaagggtgtaATAGAAGGTTCT
GCAATAGACAAAACTTATAAAGCAGCAACAGTTTAATGTTTCATGGCTGA
TTGGCTGATTGACGGAAACCATACCGGAACTCTAGGGAAATTGCAAATCT
GGATTGCTGAACTTATCTTATCACTTAAGGGGTAAGATATTTTGTGCCTG
tttttttAGGGAGATTATGTTTTTGTGGTTGTCAATGATTTGTATCTCGT
ATTTGTCGATGGCCGTTCAAGCTGAATCAAGTAAGAATTTTATTAAATAG
TAACAGTTTTTATTTTAACGGTAAGATTTaagggaattttttttcttcga
aaattgtTGATATTTGTGAAAGGGTAGCCAAGGTTCTAAGCTAATAGTAt
gattttgactttaaaaagatCTGTATAATATTAGCTTAGTTGCAAACAAA
CTCGGTAAAAACTTGCACACTTTTCCCAAAGACTTTTCATATTCCCAAGG
CAATAAATATCTTTGGgttatcaaaggcaaaaataataacatctaCATTA
TTCCCAAGAGCAATTAAAAACGAGAaacattttctctttgtttCGAACGc
gttatttttattaaaacaatcagaaacgacaaattttccttttgattGAG
GGAAAAATACTCGGATGcgacatgaattttgaaattagccgtagatatcg
ggtctgtttacagctcacttcgctaaagccgtaagggccaatctacacgg
cgcggagcaattctaaagcaaaaataggatagtcctccaattgctagtga
agatagggctttctgttacatgaaaacatgaaaaagaagaaaacagaggc
aagttcattttccaagaaaacatggttggccatgataatgcatgcaaact
ctTTTATGggctttggtgtaatctttggatgttttaaatagttttagatc
ttgtaagactacttttcattaatttctgttttgctgccctgggttggcta
gtaAACATGGGTTTCCACTTTCTTTCtgtagggagaccaagctctataat
tttagaactttgtatgttgaggtaaattttgttttttctaaaattttgag
cttggatatccaggctatagcGAATGGAgcttaattttaagtttttatag
TGGGGTTTTGTTTCGATGTGTCGTTCAGCTTTCtgaaattataatttttc
actATTATAGATACAACCAAAAAGGATTTCTGGATCGAATGTGACACTGA
AAAGATGACGATTTACATTCTGAAAGACGAAATTTCAATCCCTGAAAGTG
ATATTTCCAAATACAATATTTCATGGAATGATCCTACTTGTGGACCAAGT
GAACAATCCAATGAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTG
TGGTACCAAAGCTGTAGTTGAAGGCGATCATGTTATATTCAAGAATAAGG
TAAAGCTTTGATTTTATTACGTGAGTTCTTTTTTAATCCCACTGGaagaa
ttggtcaaaatatcgcccccagtggaaaattatactttaatttttgtctc
cgctgaaaataatcaaataaaccaatcgttatacacccctgtctcgcagt
cCCGGTGAAAccttcctcagtggggatggttttgaagtacaatttttaaa
cattgaatatcGAATGGGGataaagtttaaagtcaatttcccaccGAGGA
TGAAATTTTCGCCGAACTTTCTAGTGGGGCTCGGATCTCAGCGGGTCCGT
GACACAAGGGTGTCTTTATTGAAGAGAATTTCTCTTCCAGGTATCCATCA
ACTTGAACAAAACAAACGGATACCAAAATGATTTATTGGAGAGGATCGAT
ACCTTCGCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGT
AACACATGAACATGGAGCCAATATCACCAGAGATTCTGATTTGGTGGAAG
GTGTATCAAGTGAGTAAGATTTATGAGGAGATGTcagtaattaaaaaatt
tttaaagaacaacTACTTCGCAGCTTGCCACAAATCCTTTTAGAGGagaa
atcttataagaacaggaTCATTTTCCTGAGAACTTGAGACCAAATTGAGA
TTAGTTCCAGACTCTACAATCAGAAATAGCCAAAGAATGTTAAAGGCATT
TACGCCAGTAAATTCATAAACTACAAACGTTTTCGAAATAAAGGTTTTTG
TTCTTGAAAGTTAAGATTGGTCGAATTCTCCATAATTCTGTTTACAGGCT
GACGCGACGGGCTTTGAAATTACCAACATCTATTCATCTTTCTAGGTTCG
ACTGACGAATTCACTGTCTCGATGAATCTCCATAAATCATCAAACTTCAA
TGAAAGTCTTGGATATCCCGCAGTTATTGATAGATTGGGACGTTTCAATT
TGGAACTTGAAATTGACACTTCATTTTGTATATCATCCACGAGATTGTCA
TGGTACTTCTACGTCGAGATGATGTCATTCGGGAAGCTATTGTCACGGAC
GGGTAATTCTTTTTGATTGCATTTTCAAGCTTTAAATCCTGCTCTATTGA
ATAATGCAGGTTCCATATGATTTGACCAtatttAaaatttcatcaaaact
tGTCATTTTTGCCCTATTAATCGATATGTAGTGAAAAATTAGGTAGCGAA
ATTTCAGCAAATAGCTAGAATCTTTACCCCGTAaatAttaatacaatttt
ttgccatttcttacattctaaacaaatttaacaatttctaactttttAGA
TGTCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAATGG
AAAGAAATTCCGATTTTCATTGAACGTATTCCGATTCAAAAACTCAAACG
GCATGGTCTACATTCATTGCTCTGCACATGTCTGTTTGGAAGGAAGTAAT
ACCACAGAATGTCAATTCGGTTGTGATGTTAATAACAGAAGACGAAGACG
TTCAGTGGAGGAGAATGCTTTGACACTAAATGATGATTTATCCAAAGATT
ATGACATTCGAACTGGATTGATTATTGTAACagaaaattctaaaagtgaG
TTGAAATTTATTATTCTTGACaagaaaatactaaaatacAGTAACTCTAT
CAAAAATGTAACTCATCGACAGTCCATCCGAGGAATTCATAGTCCCTCTC
TTATggcacccctgtgtcacagactcgccaggaccccagccccacagaga
aatttggcagaaatttcATCCCCTTTGGAAAAATACCCTTTGATTTCATC
GCCACTTGAAATTGAATGTTAAAAATTtccactccaaaaccatccatCCC
TGCcggattttttttaactttggaacaatCAAATTgctattcccattggg
atttcaaaaataagttttatcCCCACTTaggaaaagttccaccgggactC
TAAATCGAGCAGAGAGAGTCGTGCGGACGTTTTCCTTTTTGTACTGCACA
GGGAGCTTATAATCATCCAATCTTCAATATTCCTAGGTGACGACGACTCA
TTCCAACAAGTCACCCAAGAATCATCCAACAATGCTAAATTCTTTCAAAC
CACGACCAATATCATTCTCATTGCAATCATTTTAGTGATGTTGACTTTTG
TATGTTCTCTCTTGGTTTTTATTGGTTTACGCCGCCGTCGAAGTGGTTCT
AAAAGATATGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAAT
TGAAGTGACAGTATTTTATCATGCCGTTCAATATTTATTAAGTTGCTTCG
CTTTGTATTatgttacaaaaatatataaaaatggattttaaaaattgtaa
attttttgtaaattcacaaatatgaaaaagattttaaacttcaaattgat
tattttattacaCCCTTCTCAAAGACTTATTGCAAC

Coding sequence (CDS) from alignment at sc0000109_pilon:1136004..1140289+

>MSTRG.13663.1.p1 ID=MSTRG.13663.1.p1|Name=MSTRG.13663.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4626bp|location=Sequence derived from alignment at sc0000109_pilon:1136004..1140289+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATTCAAGGGAGATTATGTTTTTGTGGTTGTCAATGATTTGTATCTC
GTATTTGTCGATGGCCGTTCAAGCTGAATCAAATACAACCAAAAAGGATT
TCTGGATCGAATGTGACACTGAAAAGATGACGATTTACATTCTGAAAGAC
GAAATTTCAATCCCTGAAAGTGATATTTCCAAATACAATATTTCATGGAA
TGATCCTACTTGTGGACCAAGTGAACAATCCAATGAAACATATTTGGTTT
TGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCTGTAGTTGAAGGCGAT
CATGTTATATTCAAGAATAAGGTATCCATCAACTTGAACAAAACAAACGG
ATACCAAAATGATTTATTGGAGAGGATCGATACCTTCGCCACATATTCCG
TTGAATGCAACGTCCCACAAGGTGTGAATGTAACACATGAACATGGAGCC
AATATCACCAGAGATTCTGATTTGGTGGAAGGTGTATCAAGTTCGACTGA
CGAATTCACTGTCTCGATGAATCTCCATAAATCATCAAACTTCAATGAAA
GTCTTGGATATCCCGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAA
CTTGAAATTGACACTTCATTTTGTATATCATCCACGAGATTGTCATGGTA
CTTCTACGTCGAGATGATGTCATTCGGGAAGCTATTGTCACGGACGGATG
TCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAA
AGAAATTCCGATTTTCATTGAATGCATTCAAGGGAGATTATGTTTTTGTG
GTTGTCAATGATTTGTATCTCGTATTTGTCGATGGCCGTTCAAGCTGAAT
CAAATACAACCAAAAAGGATTTCTGGATCGAATGTGACACTGAAAAGATG
ACGATTTACATTCTGAAAGACGAAATTTCAATCCCTGAAAGTGATATTTC
CAAATACAATATTTCATGGAATGATCCTACTTGTGGACCAAGTGAACAAT
CCAATGAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGTACC
AAAGCTGTAGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTATCCAT
CAACTTGAACAAAACAAACGGATACCAAAATGATTTATTGGAGAGGATCG
ATACCTTCGCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGTGAAT
GTAACACATGAACATGGAGCCAATATCACCAGAGATTCTGATTTGGTGGA
AGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCGATGAATCTCCATA
AATCATCAAACTTCAATGAAAGTCTTGGATATCCCGCAGTTATTGATAGA
TTGGGACGTTTCAATTTGGAACTTGAAATTGACACTTCATTTTGTATATC
ATCCACGAGATTGTCATGGTACTTCTACGTCGAGATGATGTCATTCGGGA
AGCTATTGTCACGGACGGATGTCCAAATGCTGACCACGTTTTCAAAAAAG
AGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTCATTGAATGCATTC
AAGGGAGATTATGTTTTTGTGGTTGTCAATGATTTGTATCTCGTATTTGT
CGATGGCCGTTCAAGCTGAATCAAATACAACCAAAAAGGATTTCTGGATC
GAATGTGACACTGAAAAGATGACGATTTACATTCTGAAAGACGAAATTTC
AATCCCTGAAAGTGATATTTCCAAATACAATATTTCATGGAATGATCCTA
CTTGTGGACCAAGTGAACAATCCAATGAAACATATTTGGTTTTGGAAGCT
GGTTATTCGTCTTGTGGTACCAAAGCTGTAGTTGAAGGCGATCATGTTAT
ATTCAAGAATAAGGTATCCATCAACTTGAACAAAACAAACGGATACCAAA
ATGATTTATTGGAGAGGATCGATACCTTCGCCACATATTCCGTTGAATGC
AACGTCCCACAAGGTGTGAATGTAACACATGAACATGGAGCCAATATCAC
CAGAGATTCTGATTTGGTGGAAGGTGTATCAAGTTCGACTGACGAATTCA
CTGTCTCGATGAATCTCCATAAATCATCAAACTTCAATGAAAGTCTTGGA
TATCCCGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAAT
TGACACTTCATTTTGTATATCATCCACGAGATTGTCATGGTACTTCTACG
TCGAGATGATGTCATTCGGGAAGCTATTGTCACGGACGGATGTCCAAATG
CTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAATGGAAAGAAATTC
CGATTTTCATTGAATGCATTCAAGGGAGATTATGTTTTTGTGGTTGTCAA
TGATTTGTATCTCGTATTTGTCGATGGCCGTTCAAGCTGAATCAAATACA
ACCAAAAAGGATTTCTGGATCGAATGTGACACTGAAAAGATGACGATTTA
CATTCTGAAAGACGAAATTTCAATCCCTGAAAGTGATATTTCCAAATACA
ATATTTCATGGAATGATCCTACTTGTGGACCAAGTGAACAATCCAATGAA
ACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCTGT
AGTTGAAGGCGATCATGTTATATTCAAGAATAAGGTATCCATCAACTTGA
ACAAAACAAACGGATACCAAAATGATTTATTGGAGAGGATCGATACCTTC
GCCACATATTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGTAACACA
TGAACATGGAGCCAATATCACCAGAGATTCTGATTTGGTGGAAGGTGTAT
CAAGTTCGACTGACGAATTCACTGTCTCGATGAATCTCCATAAATCATCA
AACTTCAATGAAAGTCTTGGATATCCCGCAGTTATTGATAGATTGGGACG
TTTCAATTTGGAACTTGAAATTGACACTTCATTTTGTATATCATCCACGA
GATTGTCATGGTACTTCTACGTCGAGATGATGTCATTCGGGAAGCTATTG
TCACGGACGGATGTCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACC
GCTGACAATGGAAAGAAATTCCGATTTTCATTGAATGCATTCAAGGGAGA
TTATGTTTTTGTGGTTGTCAATGATTTGTATCTCGTATTTGTCGATGGCC
GTTCAAGCTGAATCAAATACAACCAAAAAGGATTTCTGGATCGAATGTGA
CACTGAAAAGATGACGATTTACATTCTGAAAGACGAAATTTCAATCCCTG
AAAGTGATATTTCCAAATACAATATTTCATGGAATGATCCTACTTGTGGA
CCAAGTGAACAATCCAATGAAACATATTTGGTTTTGGAAGCTGGTTATTC
GTCTTGTGGTACCAAAGCTGTAGTTGAAGGCGATCATGTTATATTCAAGA
ATAAGGTATCCATCAACTTGAACAAAACAAACGGATACCAAAATGATTTA
TTGGAGAGGATCGATACCTTCGCCACATATTCCGTTGAATGCAACGTCCC
ACAAGGTGTGAATGTAACACATGAACATGGAGCCAATATCACCAGAGATT
CTGATTTGGTGGAAGGTGTATCAAGTTCGACTGACGAATTCACTGTCTCG
ATGAATCTCCATAAATCATCAAACTTCAATGAAAGTCTTGGATATCCCGC
AGTTATTGATAGATTGGGACGTTTCAATTTGGAACTTGAAATTGACACTT
CATTTTGTATATCATCCACGAGATTGTCATGGTACTTCTACGTCGAGATG
ATGTCATTCGGGAAGCTATTGTCACGGACGGATGTCCAAATGCTGACCAC
GTTTTCAAAAAAGAGTCTACCGCTGACAATGGAAAGAAATTCCGATTTTC
ATTGAATGCATTCAAGGGAGATTATGTTTTTGTGGTTGTCAATGATTTGT
ATCTCGTATTTGTCGATGGCCGTTCAAGCTGAATCAAATACAACCAAAAA
GGATTTCTGGATCGAATGTGACACTGAAAAGATGACGATTTACATTCTGA
AAGACGAAATTTCAATCCCTGAAAGTGATATTTCCAAATACAATATTTCA
TGGAATGATCCTACTTGTGGACCAAGTGAACAATCCAATGAAACATATTT
GGTTTTGGAAGCTGGTTATTCGTCTTGTGGTACCAAAGCTGTAGTTGAAG
GCGATCATGTTATATTCAAGAATAAGGTATCCATCAACTTGAACAAAACA
AACGGATACCAAAATGATTTATTGGAGAGGATCGATACCTTCGCCACATA
TTCCGTTGAATGCAACGTCCCACAAGGTGTGAATGTAACACATGAACATG
GAGCCAATATCACCAGAGATTCTGATTTGGTGGAAGGTGTATCAAGTTCG
ACTGACGAATTCACTGTCTCGATGAATCTCCATAAATCATCAAACTTCAA
TGAAAGTCTTGGATATCCCGCAGTTATTGATAGATTGGGACGTTTCAATT
TGGAACTTGAAATTGACACTTCATTTTGTATATCATCCACGAGATTGTCA
TGGTACTTCTACGTCGAGATGATGTCATTCGGGAAGCTATTGTCACGGAC
GGATGTCCAAATGCTGACCACGTTTTCAAAAAAGAGTCTACCGCTGACAA
TGGAAAGAAATTCCGATTTTCATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13663MSTRG.13663Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13663.1.p1MSTRG.13663.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13663.1.p1.exon1MSTRG.13663.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13663.1.p1.exon2MSTRG.13663.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13663.1.p1.exon3MSTRG.13663.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13663.1.p1.exon4MSTRG.13663.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13663.1.p1.exon5MSTRG.13663.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13663.1.p1.exon6MSTRG.13663.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13663.1.p1.exon7MSTRG.13663.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109_pilongenomesc0000109_pilon:1136004..1140289 +