MSTRG.13639.1.p1 (mRNA) -

Overview
NameMSTRG.13639.1.p1
Unique NameMSTRG.13639.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000109_pilon:841708..846080-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13639.1.p1 ID=MSTRG.13639.1.p1|Name=MSTRG.13639.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4373bp|location=Sequence derived from alignment at sc0000109_pilon:841708..846080- (Clytia hemisphaerica_ch_hm2_pilon)
GCAGGTTGGAGTATATTCTTTAAACTTTTGTTTCAATCTTTAATCTTTAT
ATTCACACAGTGAAGGTAAGTATTTGTCATTTTTCTTAGTTTGAAAAAAG
TTTTCCGACTTTTGATGTTCTCCAATCTATTCCAATTAACCTTAGGACAT
TGACACCTGTTCTATAGGCTTCGTTTCACTTCTTTGAAAACTGCAGCATT
TTGGGACTTAATCTTTGACTTTCTAGCGTTTCGGTACTTGGTCTTTGGGA
CTTCACAATTTGTAAACTTGTTATTTGAGACTCCAGAGTTTCGGTACTTG
GTCTTTGGGACTCCAGGGTTTTGTTACTTGGTCTTTGGGATTCCAGGGTT
TTGGTACTTGGTCTTTGGGACTCCAGGGTTTCGGTACTTGGTCTTTGGGA
TTCCAGGGTTTTGGTACTTGGGTCTTTGGGACTCCAGGGTTTCGGTACTT
GTTCTTTGAGACTCCAGGGTTTTGTTACTTGGTCTTTGGGACTCCAGGGT
TTCGGTACTTGGTCTTTGGGATTCCAGGGTTTTGGTACTTGGGATTCCTT
GGTCTTTGGGACTCCAGGGTTTCGGTACTTGGTCTTTGGGACTCCAGGGT
TTGTCTTGGTCTTTGGACTTGGGCCAGGGTTTTGGTACTTGGTCTTTGGG
ACTCCAGGGTTTTGGTACTTGGTCTTTGGGATTCCAGGGTTTTGTTACTT
GGTCTTTGGGATTCCAGGGTTTTGGTACTTGGTCTTTGGGATTCCAGGGT
TTTGGTACTTGGTCTTTGGGACTCCAGGGTTTTGTTACTTGGTCTTTGGG
ACTCCAGGGTTTTGGTACTTGGTCTTTGGGATTCCAGGGTTTTGGTACTT
GGTCTTTGGGACTCCAGGGTTTTGTTACTTGGTCTTTGGGACTCCAGGGT
TTTGGTTACTTGGTCTTTGGGACTCCAGGGTTTTGTTACTTGGTCTTTGG
GATTCCAGGGTTTTGTTACTTGGTCTTTGGGATTCCAGGGTTTTGGTACT
TGGTCTTTGGGATTCCAGGGTTTTGTTACTTGGTCTTTGAGACTCCAGAG
TTTTGGTGCTTGGTCTTCGAGACTCCAGAGTTTCGGTACTTGGTCTTTGG
GACTGCAGGGTTTCGGTACTTTGTTATTGGGACTCCAGGCTTCGGTACTT
TGTTATTGGGACTCCAGGGTTTTGGTACTTGGTCTTCGAGACTCCAGGGT
TTCGGTAATATAAACACTAACCACATAAAATTCTTAATTTACAGTCTTAT
TAACCAACCATGGCTGCTATGTTACGAGCTCTTTCAAGACCATTGAATAT
GGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTGGCCGCCGGTGCTATGG
GATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTGAAAAAAGCCTAC
AGACAATTTATGCCGTGTATAGATTATCCTGATTTATCCAAACACAATAA
CTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTAAACTTCGTGATC
TGGTAAGTTTGAAATCTCAAGATTTTCTTTTTCCTTATTCATAGTAGACC
TTTCTGTAATTGAAAGTTTAGGACTAATGATTCAATACGATTATTCGCCT
ACTAATGATTCATCCAGAAGAGTTGTATTACAATTAAACAGCAGGTTAGA
TTCTGGGAACAAATAAGTGCCATTGTGTATATTTCTTGTATTCTTAATGC
TTATTTAAGGCGTGAAAAAAAACAACGAAATCTATCAAAATTAAAATGTA
AAATTAAACTCGAAATCTATAGTATTTAATGTCCTGAATATATCGCCTGA
TTTTATATATAGCAAACACCATCAGGTTATACACTTGACATGGCCATCCA
AACAGGTGTCGACAATCCCGGACATCCGTTCATTTCAACGGTCGGTGTTG
TTGCCGGTGATGAAGAATCTTATGAAGTCTTCAAAGAATTGATGGACCCC
ATTATTCAAGACAGACATAACGGTTTCGGACCTAATGATCGCCATAAAAC
TGATCTTGATGCCTCCAAAATTAAAGGTATACTTTCGAAATTCTGACTGG
AATTACTTTCAATGTTATGTTAGTACATTAAGGGAGCTAATTTTCGTGGG
ATCTGATTTTAACAATTTTTCGGCAAAACCGTGAAAATTAGAACCCACGA
ATTACAAATTTGACAATTTTTCATGAGAACTTTGAAAAATCCCTGAAATG
TGTCCAAGATAGGGCAAAACCGCTAAAGTTAATTCCTGCGAAATGATTTT
TTTTGCGTCCACGAAAATTAGTTCCCTTAATATAAGGTATTCTATGATTC
TGGGATCACTCACTCTATTAACAGCTCTGATGATTTTAAAATTAGGAAAG
GTCTCGCTTGGCAAGCTTGTCCTTCGGACCTAGATCGAAGGATGATGATG
ACGATCACTCAATGAAGCAACTTGCTGAGATCCCCACTCCAAATTTTAAC
CTCAATTTCTTTTCTCCTAGGTGGCAATTTTGATGAAAAGTATGTTTTGA
GTTCACGCGTGCGCACAGGACGCTCCATCAAGGGACATTCTCTTCCACCA
CACTGTACTCGTGCTGAACGTCGCAGTGTTGAACACATTGTCACATCCGC
CTTGAACTCGTTACAAGGTGATCTGGCTGGTACTTATTATCCGTTATCTG
GAATGACCGACGATGAACAGCAACAATTGATCGATGATCATTTCTTGTTT
GATAAACCAGTGTCTCCGTTGTTGACCTGTGCTGGTATGGCACGTGACTG
GCCTGATGCACGTGGTATCTGGCATAACAAAAATAAGAATTTCCTGATCT
GGATCAACGAGGAAGATCACACTCGTGTCATCTCTATGGAGAAGGGTGGA
GACATGAGGAAAGTCTTTGAACGATTCTGCCGTGGATTGAAAGAAGTTGA
GAAACATATTGAGGAACATGGTCATGGATTTATGTGGTCTGAACGTCTTG
GGTATATCTTGACTTGCCCATCCAACCTTGGAACAGGCCTAAGAGCTGGT
AAGCGAGGCTAACTTTTTGTTATTTGGTTGTTTTCTCCTTGCCAACTAAC
TAAAGACCTTTACTCTACTTTATCCATTAAGAATATCACCGACATCATAT
AAAGTGAGATGAAAATTTACGTCCCAAAAGTCAGTGCTTAGAAACCCATA
ACGGCTGAATATTCTTTATAGTTGAGATGTGATTAAATTTTCACCCCAAT
ATCATACTCAATCTTTCTATAGGTGTTCACGTGAAATTACCAAAGCTATC
ACAAGACAAACGTTTCGATAACATTCTTCAAGCATACCGTTTACAAAAAC
GGGGAACAGGAGGTGTCGACACTGCTGCTGTTGGTGGTACCTTCGATATC
TCAAACTTGGATCGTCTTGGACATTCTGAAGTTGAACTGGTTCAACAAGT
CATCAATGGTGTCAACAATTTGATTGACATGGAAAAATCCTTAGAAAAGG
GTAAGAAGATTGACAGCCTATTGCCCAAAAACATGTCACAATAGCTCACC
CCCCCCTCTATTATGTCTATTCCCCATTTTTTTTAAAATATTTAAAACGA
AAGTAAAAAATAAAAAAGTATAAAAAATAAAACAAATAAATGTGTTTAAA
ATTCTAATTTAAAAATTTTTGAAAATGAAATTACAAAAATTACAATTTTT
CAACCTGTAAATTAAATTCAAAATTCTCCTTAAAAAATATTTCTTTATCT
ATTTCTTTCATTTCTTGAGGTCCGGTAACTCCAAGATGGTCAGGAATGCC
AGCTCAATCAATCACAATAAATAAACTTAAAATTAAATGCTAAAAAACCA
TTGTAAGGATAAATACTGCCAAAAAAATCAACCTTTTTAACAAAATTCAA
TCTTTCGGATGACCCACGAAAAAGTATAAGAGTTTGATGGCTAACTGTGT
CTGTAAAAATGTAATTTTTCACAAAAAATTTCGTTTGTTTTTGTAAGGAA
GAAACTTTGAATTTGATAAACTTATATAATTTTAAATTTACCTCTCTTTT
TTACCATGAAAATATAATTTGTGAGAATCCACATAGTTACGAACACAGTT
GGCAATCAACCCCTTATATTTTTTCGTGCGTCATCCCGTACCAAAATGAT
AAAAAACAGACAAAATTAGTTCCAAAAATATTCTACCGAATCCGATAATC
CAGTAAATTAAAACAAAAACAGACAGTTCTATTGAAAGGGTTAGACATCG
ACGATTGAGCTCTTGAAAGAAGGCCTTCCCAAGAGTTACCGTGGCCGCAT
CTTTTTACCGTGACACGTCTTTTTGTAATTTTGTACATGTGTATACCGAT
AATATTGTTAATACTGTAAATAATGTGAATATACAAACCATGATTGTACA
TTTTATATTTTGAATTATATTTT

Coding sequence (CDS) from alignment at sc0000109_pilon:841708..846080-

>MSTRG.13639.1.p1 ID=MSTRG.13639.1.p1|Name=MSTRG.13639.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5028bp|location=Sequence derived from alignment at sc0000109_pilon:841708..846080- (Clytia hemisphaerica_ch_hm2_pilon)
GTGTTCACGTGAAATTACCAAAGCTATCACAAGACAAACGTTTCGATAAC
ATTCTTCAAGCATACCGTTTACAAAAACGGGGAACAGGAGGTGTCGACAC
TGCTGCTGTTGGTGGTACCTTCGATATCTCAAACTTGGATCGTCTTGGAC
ATTCTGAAGTTGAACTGGTTCAACAAGTCATCAATGGTGTCAACAATTTG
ATTGACATGGAAAAATCCTTAGAAAAGGGTAAGAAGATTGACAGCCTATT
GCCCAAAAACATGTCACAATAGGTGGCAATTTTGATGAAAAGTATGTTTT
GAGTTCACGCGTGCGCACAGGACGCTCCATCAAGGGACATTCTCTTCCAC
CACACTGTACTCGTGCTGAACGTCGCAGTGTTGAACACATTGTCACATCC
GCCTTGAACTCGTTACAAGGTGATCTGGCTGGTACTTATTATCCGTTATC
TGGAATGACCGACGATGAACAGCAACAATTGATCGATGATCATTTCTTGT
TTGATAAACCAGTGTCTCCGTTGTTGACCTGTGCTGGTATGGCACGTGAC
TGGCCTGATGCACGTGGTATCTGGCATAACAAAAATAAGAATTTCCTGAT
CTGGATCAACGAGGAAGATCACACTCGTGTCATCTCTATGGAGAAGGGTG
GAGACATGAGGAAAGTCTTTGAACGATTCTGCCGTGGATTGAAAGAAGTT
GAGAAACATATTGAGGAACATGGTCATGGATTTATGTGGTCTGAACGTCT
TGGGTATATCTTGACTTGCCCATCCAACCTTGGAACAGGCCTAAGAGCTG
CAAACACCATCAGGTTATACACTTGACATGGCCATCCAAACAGGTGTCGA
CAATCCCGGACATCCGTTCATTTCAACGGTCGGTGTTGTTGCCGGTGATG
AAGAATCTTATGAAGTCTTCAAAGAATTGATGGACCCCATTATTCAAGAC
AGACATAACGGTTTCGGACCTAATGATCGCCATAAAACTGATCTTGATGC
CTCCAAAATTAAAGATGGCTGCTATGTTACGAGCTCTTTCAAGACCATTG
AATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTGGCCGCCGGTGC
TATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTGAAAAAAG
CCTACAGACAATTTATGCCGTGTATAGATTATCCTGATTTATCCAAACAC
AATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTAAACTTCG
TGATCTGGTGTTCACGTGAAATTACCAAAGCTATCACAAGACAAACGTTT
CGATAACATTCTTCAAGCATACCGTTTACAAAAACGGGGAACAGGAGGTG
TCGACACTGCTGCTGTTGGTGGTACCTTCGATATCTCAAACTTGGATCGT
CTTGGACATTCTGAAGTTGAACTGGTTCAACAAGTCATCAATGGTGTCAA
CAATTTGATTGACATGGAAAAATCCTTAGAAAAGGGTAAGAAGATTGACA
GCCTATTGCCCAAAAACATGTCACAATAGGTGGCAATTTTGATGAAAAGT
ATGTTTTGAGTTCACGCGTGCGCACAGGACGCTCCATCAAGGGACATTCT
CTTCCACCACACTGTACTCGTGCTGAACGTCGCAGTGTTGAACACATTGT
CACATCCGCCTTGAACTCGTTACAAGGTGATCTGGCTGGTACTTATTATC
CGTTATCTGGAATGACCGACGATGAACAGCAACAATTGATCGATGATCAT
TTCTTGTTTGATAAACCAGTGTCTCCGTTGTTGACCTGTGCTGGTATGGC
ACGTGACTGGCCTGATGCACGTGGTATCTGGCATAACAAAAATAAGAATT
TCCTGATCTGGATCAACGAGGAAGATCACACTCGTGTCATCTCTATGGAG
AAGGGTGGAGACATGAGGAAAGTCTTTGAACGATTCTGCCGTGGATTGAA
AGAAGTTGAGAAACATATTGAGGAACATGGTCATGGATTTATGTGGTCTG
AACGTCTTGGGTATATCTTGACTTGCCCATCCAACCTTGGAACAGGCCTA
AGAGCTGCAAACACCATCAGGTTATACACTTGACATGGCCATCCAAACAG
GTGTCGACAATCCCGGACATCCGTTCATTTCAACGGTCGGTGTTGTTGCC
GGTGATGAAGAATCTTATGAAGTCTTCAAAGAATTGATGGACCCCATTAT
TCAAGACAGACATAACGGTTTCGGACCTAATGATCGCCATAAAACTGATC
TTGATGCCTCCAAAATTAAAGATGGCTGCTATGTTACGAGCTCTTTCAAG
ACCATTGAATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGTTTGGCCG
CCGGTGCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTCTACGGTG
AAAAAAGCCTACAGACAATTTATGCCGTGTATAGATTATCCTGATTTATC
CAAACACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATGTATGCTA
AACTTCGTGATCTGGTGTTCACGTGAAATTACCAAAGCTATCACAAGACA
AACGTTTCGATAACATTCTTCAAGCATACCGTTTACAAAAACGGGGAACA
GGAGGTGTCGACACTGCTGCTGTTGGTGGTACCTTCGATATCTCAAACTT
GGATCGTCTTGGACATTCTGAAGTTGAACTGGTTCAACAAGTCATCAATG
GTGTCAACAATTTGATTGACATGGAAAAATCCTTAGAAAAGGGTAAGAAG
ATTGACAGCCTATTGCCCAAAAACATGTCACAATAGGTGGCAATTTTGAT
GAAAAGTATGTTTTGAGTTCACGCGTGCGCACAGGACGCTCCATCAAGGG
ACATTCTCTTCCACCACACTGTACTCGTGCTGAACGTCGCAGTGTTGAAC
ACATTGTCACATCCGCCTTGAACTCGTTACAAGGTGATCTGGCTGGTACT
TATTATCCGTTATCTGGAATGACCGACGATGAACAGCAACAATTGATCGA
TGATCATTTCTTGTTTGATAAACCAGTGTCTCCGTTGTTGACCTGTGCTG
GTATGGCACGTGACTGGCCTGATGCACGTGGTATCTGGCATAACAAAAAT
AAGAATTTCCTGATCTGGATCAACGAGGAAGATCACACTCGTGTCATCTC
TATGGAGAAGGGTGGAGACATGAGGAAAGTCTTTGAACGATTCTGCCGTG
GATTGAAAGAAGTTGAGAAACATATTGAGGAACATGGTCATGGATTTATG
TGGTCTGAACGTCTTGGGTATATCTTGACTTGCCCATCCAACCTTGGAAC
AGGCCTAAGAGCTGCAAACACCATCAGGTTATACACTTGACATGGCCATC
CAAACAGGTGTCGACAATCCCGGACATCCGTTCATTTCAACGGTCGGTGT
TGTTGCCGGTGATGAAGAATCTTATGAAGTCTTCAAAGAATTGATGGACC
CCATTATTCAAGACAGACATAACGGTTTCGGACCTAATGATCGCCATAAA
ACTGATCTTGATGCCTCCAAAATTAAAGATGGCTGCTATGTTACGAGCTC
TTTCAAGACCATTGAATATGGCTGCAGGCGTAGGCGCCGCCGCATTAGGT
TTGGCCGCCGGTGCTATGGGATTCCCTGAAGCTGCTAATGATTGCAAGTC
TACGGTGAAAAAAGCCTACAGACAATTTATGCCGTGTATAGATTATCCTG
ATTTATCCAAACACAATAACTGCTTGAGTAAAGTGTTGACACCGCAAATG
TATGCTAAACTTCGTGATCTGGTGTTCACGTGAAATTACCAAAGCTATCA
CAAGACAAACGTTTCGATAACATTCTTCAAGCATACCGTTTACAAAAACG
GGGAACAGGAGGTGTCGACACTGCTGCTGTTGGTGGTACCTTCGATATCT
CAAACTTGGATCGTCTTGGACATTCTGAAGTTGAACTGGTTCAACAAGTC
ATCAATGGTGTCAACAATTTGATTGACATGGAAAAATCCTTAGAAAAGGG
TAAGAAGATTGACAGCCTATTGCCCAAAAACATGTCACAATAGGTGGCAA
TTTTGATGAAAAGTATGTTTTGAGTTCACGCGTGCGCACAGGACGCTCCA
TCAAGGGACATTCTCTTCCACCACACTGTACTCGTGCTGAACGTCGCAGT
GTTGAACACATTGTCACATCCGCCTTGAACTCGTTACAAGGTGATCTGGC
TGGTACTTATTATCCGTTATCTGGAATGACCGACGATGAACAGCAACAAT
TGATCGATGATCATTTCTTGTTTGATAAACCAGTGTCTCCGTTGTTGACC
TGTGCTGGTATGGCACGTGACTGGCCTGATGCACGTGGTATCTGGCATAA
CAAAAATAAGAATTTCCTGATCTGGATCAACGAGGAAGATCACACTCGTG
TCATCTCTATGGAGAAGGGTGGAGACATGAGGAAAGTCTTTGAACGATTC
TGCCGTGGATTGAAAGAAGTTGAGAAACATATTGAGGAACATGGTCATGG
ATTTATGTGGTCTGAACGTCTTGGGTATATCTTGACTTGCCCATCCAACC
TTGGAACAGGCCTAAGAGCTGCAAACACCATCAGGTTATACACTTGACAT
GGCCATCCAAACAGGTGTCGACAATCCCGGACATCCGTTCATTTCAACGG
TCGGTGTTGTTGCCGGTGATGAAGAATCTTATGAAGTCTTCAAAGAATTG
ATGGACCCCATTATTCAAGACAGACATAACGGTTTCGGACCTAATGATCG
CCATAAAACTGATCTTGATGCCTCCAAAATTAAAGATGGCTGCTATGTTA
CGAGCTCTTTCAAGACCATTGAATATGGCTGCAGGCGTAGGCGCCGCCGC
ATTAGGTTTGGCCGCCGGTGCTATGGGATTCCCTGAAGCTGCTAATGATT
GCAAGTCTACGGTGAAAAAAGCCTACAGACAATTTATGCCGTGTATAGAT
TATCCTGATTTATCCAAACACAATAACTGCTTGAGTAAAGTGTTGACACC
GCAAATGTATGCTAAACTTCGTGATCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13639MSTRG.13639Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13639.1.p1MSTRG.13639.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13639.1.p1.exon5MSTRG.13639.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13639.1.p1.exon4MSTRG.13639.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13639.1.p1.exon3MSTRG.13639.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13639.1.p1.exon2MSTRG.13639.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13639.1.p1.exon1MSTRG.13639.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109_pilongenomesc0000109_pilon:841708..846080 -