MSTRG.1360.2.p2 (mRNA) -

Overview
NameMSTRG.1360.2.p2
Unique NameMSTRG.1360.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:2412404..2418169-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1360.2.p2 ID=MSTRG.1360.2.p2|Name=MSTRG.1360.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5766bp|location=Sequence derived from alignment at sc0000006_pilon:2412404..2418169- (Clytia hemisphaerica_ch_hm2_pilon)
AGACAAAATAATTACAGAATGACATTGTGATACCTTAAAAAAAGTGTTCC
TCTTTCAGAAGTAATTATTTTAATGATCTCCAGAGATAATTAATCGTGAT
ATCTTTTTGTTGTTCGAGCAACACGTTCTTCCGCTTAATAATCCTTTTAG
AAACCACATCTCTACAGAAAGGAACATTTTTTCAACAACAAAAAGGCGGA
GAGCAAAACAGATAAAAAGGATTTGAATTGAATTCAGTACAAAATTTCAA
ACCCAAATCAGAGAAGTTGGTTTTCAAGGTATGTTCTGTTTTTGATTGAC
TTGTATTTATTCAAAACTCAATATTGTCCCACTTCAGAAACACGTTTGAT
AACTTTACCGATATTCTACTTGTTGAGTTTTCGGATTTATTTTTTAGACA
AGATATGAAGGTTGTAACACTGCTACTTGCATGTGTGGTGGTAGCACAAT
GTCATTCCACACTTCACCAGGATGAAACGAGTAAGTGTTGTTCAATTTAC
GTCTTTCCCCAGGCCTAAAAAAGGAGAAATATTTTCATGCGTGACAAGTT
AATCATTAGTATTTCAAACTATCAGCCAACTTATATTAAAGATCATAATT
ATGTTTCTATTTCAGAATTAGACGAAGATTTGGCAAAATTAACAAAGATG
GTGTTGGGACGTTGGAAGAATAAAAGATCCCACAGGCCTTCTCGTCCCAC
TTCAATACCAAGAGGTGAGTGATTTGAAGTTTCTAACGTAATCCGCCCAA
TTTTCGCCTTAACACAGGGAATAGGGCAAAGTAATGTTCACGCGTTTAAG
AGTCAAAAATATTTTTTATATCTTATTTTTCCCAAGAGTCAAAATTCAGT
GTCGTTATTTTTTTAAACATTTCTCGTCTTTTTATCAGAATGTCCTGTCA
AAGTCGGTGCACGTCGTAACTGTCAGAAAGAGCGACTGACCGATATTGCA
AGAGCTCGATATTGGTACAAAATTTCCGATGAAAACACTAACATTGATTT
TCCTTTGGCTTCAACGATTCCCTGGTTAGCGCAGAATTTATCTGAAACCA
AATATTATTACGCCTTGGATCCATTTGAATCGCGACATTTAGTGCTTCTT
CAAACGTGGACAAACATATTGCTAAACACCGTTTTCCCTGGTTTAACTGC
TGCTTTCAACACTACTTCTTTTGAAAGCCCGCAAGAATATGCGATTGCTT
ATAAAGCATGGCAGCAATCTGTTCAGGTGAGAAAATCTTTTTCTTAATTG
TTTTCTTCATCTGTGCGCTTTTCCATTTGCACAACTTGAACAAAAGATTT
GGTGTGTCCCGATATTTCTTATCTTTCCAATCACATAGAGAGTTTTCAGG
AACATTTCTGGAAGTTTCATTCTCTCCGACACTTCATGTTGAACAATAAA
TTATTCACTACTTCTTTTGGTGTAGGCGACAAAAGCACCTCAATATTTTG
CCAACCCATCGCAATTCCCTACAATCACAGACCATGTTTCGACGGGTCAC
TGGCAAACTGACGAGGCGTTTACTCAACGAAGATTGACTGGTCAATGTCC
CTACTTCTTGAAGAAAGTCGTTGACGATGAAGGTTTGTTTCTGAAGAAAT
CTTCATGAGATGATTTTTCTTCTTTTTAAATATTTCCCGTTTTCCAAAAG
GGAAATATTTGTTAAAATGGGCTTTCTCCATAATAATAATTTTCAGTGTC
AAAACGCCTTCCGTACGCCCTGACTGACGCCCGTTTTAGCGCCTAAAGAA
AGTATACTTTATAAGAATCAAATCAATATCTCTTGATTGAAGGCAATATG
CCTTTCGGTAATTAGTCCCTACAAAGTAAACAAAGGATGGCGAAAAAGAT
TAGCATATTTATTTTTATTATGAGCATCTACTTTATAAGAATCAAATCAA
TATCTCTTGATTGAAGGCAATATGCCTTTCGGTAATTAGTTATTAGAAAG
TAAACAAAGGATGGCGAAAAAGATGAGCATATTTATTTTTATTATAAGCA
TCTACTTTATAAGAATCACATCAATAACTCTTGATTGAAGGCAATATATC
TTTCGATAATTAGTTATTAGAGAGTAAACAAAGGATGGCGAAAAAGATAA
GCATATTTATTTTTATTATAAGCATCTACTTTATAAGAATCAAATCAATA
ACTCTTGATTGAAGGCAATATATCTTTTGGTAATTAGTTATTAGAAAGTA
AACAAAGGATGGATAAAAAGATTAGCATATTTATTTTTATTATAAGCATC
TACTTTATAAGAATCAAATCAATAACTCTTGATTGAAGGCAATATGCCTT
TCGGTAATTAGTCCTTACAAAGGATAAACAAATTATAAGGAATGATTGAA
GGCAATATAAATTAGTTATTAGAGCAAAGGATGGATTTAGCATATTTTTT
ATTATAAGCATCTACTTTATAAGAATCAAATCATTAACTCTTGATTGAAG
GCAATATGCCTTTCAGTAATTAGTTCTTACAAAGTAAACAAAGGATGGCG
AAAAAAATGAGAATATTTATTTTTATTATAAGCATCTGCTTTATAAGAAT
CAAATCAATAACTCTTGATTGAAGGCAATATATCTTTCGGTAATTATTTA
TTAGAAAGTAAACAAAGGATGTATAAGAAGATTAGCATATTTATTTTTAT
TATAAGCATCTACTTTATAAGAATCAAATCAATAACTCTTGATTGAAGGC
AATATATCTTTCGTTAATTAGTTCTTACAAAGTAAACAAAGTATGGCGAA
AAAGATTAGTCTACTTTATAAGAATCACATAAATTTCAGAATTTTTGGCG
TTGTCACTGTGATAACATGTGAGCGATAACTTCTCTTTTTGAGATGTGAG
CAAGCGTCGCAGTTTTCCCCGATAAGGTATAGTGCTACTCTACTTAAGTG
AAAGAAGTGAACACTACCATAGGCTAACCTTCCTCCATGACTTTTTTTTA
AATTCAATAACAGAAAAATATTTCTTCTTACAGATGACAAAGGCTACCAC
GTGGACGATTTGAAACCTTTAGTCAACACCAAATTCTTTGAAGACTTTGA
AATGAAATATTCTGCTACAGAATCTGTGTCTATTGAACAGGTAATTACAA
TTTAATTCTTCCAGAAATACTTTTAAAGAATTGTTATGAAATTTTAATAA
ACTATTGCTTTCGCATCAGTGCAATGAAGACGAGTGGTAACTCTGATCAC
GATATCACACAATTGTTTGTCTTCAATAATGATCACGAAAATCAGCAAAA
AATGGATAATCACGCATCCCTTTGAAAAAGTCCAAATCACGTATCATGGC
TCAAATATTTTTTCACGTTTTACGTTTTGCGTAATCACGTTTTGACCTCT
GATCATGCAATCACGCAAACCGTTTGGGGGGCTCTTAGAACCCAGTCATG
ATTGTGCTGTCTTAAATCAAATAGAGAAAGATTCGTCTGCTTTTCAACTT
TTCAGAAACTTTTTTTATTTATTATTTATAGGCGATTGAGGACGGCCGAC
TGTTTGTACTTCACATCCCTGAAATGGTGGGCATTAAAAACGTACCCGAC
GTATTCGCACCGCTATTGCAAGATCGCAAACTTGCTGACGTCAAGTCACC
GATATCGTTCTTTGTGTTGGGAGATGACGGACTTTTACACGTAGTTGCGA
TCCAAAGAAATCCTGTTCAAAGTATGTTTGACCTCTATTTTTGATTAGGT
ATGGGGTTTGAGTGGAGGAGGAAACTTGATCCAAGTAACTACTGACGAAA
ACGTCTTTTCTCGATTGCAATCCTATAAACAAAAAAGATTTCTTTCCACA
CAATCACTGTACAAAGCACTGAGATAATAAACTGAAAGCTAACCTTTAAA
ACTTTTCTTTTTTTCCAGCATCCGAAGTTGATACATCAGAAAGTTCCAAT
TGGCTTTTAGCTAAAGGAGAAGCTGAGATGGCCTCGGACCTTTATTGTCA
AGCTAAAATACATCTCGGAGAAGTCCATTTCGTGTCCACCATCTACTGTC
TGTCCTTTAGACGTCATTTAAGCACCAAGCACCCCCTCTACGATTTCTTT
AAGCACCATTGCGAAGGGACTGTCCCTCATATCACCACAGTCTTTGAGAC
TTTGACCACACCCAATGCTGCGGGTAGTGTCATCTACGGAACCGGGAATC
AAGGTTTTCTTGATTTGTCGCAAAAAGCTTTTGCAGAACGAGATTATGAA
AGCAACACTTATGAAGATTTCATTAAGGTAAGAACAATGCGTAAAGGCTT
TTTACCCTTTATTAAGATTTGACCTGGGGTAGTCTGTTAAACTAAATGGC
TTATGCAAAATAGTAAATTTGTGCAAATGCGTACATAGTATTTCTTGCTG
ACTTTGACACTATCCCTTAGAATCTTGTTTTAAAGAATCCAATATTTTGC
GTTTCCAGGGTAACGGTTTGGATGACGAGGACATTAAATATTACCCTTTC
CGTGATGACGTCAAAGTAATTATGAAAGAATACGAGATTTTCATCGATGA
CATCATCAAGACTTATTACAGAAGAGGAAGAATTCACAGGGACGCTGAAT
TACAATCATGGGCTAACGAGTTGTCGCCTGAAGGAACGGTTCAACCTGAT
GCTGGGCGAGGAAAGGTGTGGAATGTGTTTAAATGTCACCAAACCCATGT
CTCATTTTCCAAATTAAAGCTTTTCAACTGGATATTATTTGTTTACCAGG
GTCTAATTTTGGGATTTTTTCCCAGTGCGTAACAGGTCTGCGTTGGCTTT
GAGAGTGTTTTACCAAACTCGAAACTCAAGACAATGTTTTTGACTTCCAA
TTTGCTAAAAATGAAGAGTTTCAATTTTTAGCCTTCTTCCTTACATGTAT
CTCTCTGAACACACTTCCGACACCTGAAGTGTTCTTCTTCTTCTTCCCAG
CCAATATCTCTAAGTATTGTTATTTCATTTAGATGAAAGGTTTTCCAGCA
AAGTTCGAAACATGTGATCAGTTGAGGACGTTCTTGAAACGCTTTCTGTG
GATTAACTTGTTCCATACTTCAGCAAATTATCCTGATTACAGAGATTTCA
TGCCAACTTCACCTACTCGGCTTTATCAAAATCTCGATGGAACAGACCTG
CCCTTATTGAAGGCTCTTACTGGGAAACTTTACAATGTTGTGAGTATATT
ATGTGGTTTTCATTTGACGACTTTCAAACTATCAACTGAAAGTTGAGTAA
ATCAATAGGGTGTTTTATATCTACAAATCCTAGGTTATAACTTACACCAT
TTACAGGGCTTGGTCGCTTGGCCGTATGGGTTTTGTTAATACCATATCTA
TGTAATTAATCTGAAAATTAAATTCCTTTTCAGCAATATATGATGTTCAG
AGGTTTGCTAGCAAATTTCCGAGTGAACAGGATTTTCTCATACTGGAAAG
ACATCACAAACCCGACATACCGACGAATTGTGCGCAAAGCTTTTTACCGT
TTGAACACCATCGTCCAAAAGAAGTTAGAAGCAAGAAATGCTGAACGTAA
AGCCAAAAATCAATTGGGTTATCAAATCATGGAACCGAAATGGCTGACGA
ATAGCGTCCATATTTGAAAATATTTCAACCAAGCTATCAAATATGAACCT
AGCCTGCTTAATATATGACTAATCCTTTTTATTTTGATTTTTTTGTCCAT
ATTTATCGTTTAAATAATAATCTTTTAATTTTTTTTATTTAACCTAAGAT
ACAAATATTAATTCCGAAATCCCATTTTCGATGTCAAGTTAATGCGTAAT
TGATGTTAGAAAATTA

Coding sequence (CDS) from alignment at sc0000006_pilon:2412404..2418169-

>MSTRG.1360.2.p2 ID=MSTRG.1360.2.p2|Name=MSTRG.1360.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1755bp|location=Sequence derived from alignment at sc0000006_pilon:2412404..2418169- (Clytia hemisphaerica_ch_hm2_pilon)
CAATATATGATGTTCAGAGGTTTGCTAGCAAATTTCCGAGTGAACAGGAT
TTTCTCATACTGGAAAGACATCACAAACCCGACATACCGACGAATTGTGC
GCAAAGCTTTTTACCGTTTGAACACCATCGTCCAAAAGAAGTTAGAAGCA
AGAAATGCTGAACGTAAAGCCAAAAATCAATTGGGTTATCAAATCATGGA
ACCGAAATGGCTGACGAATAGCGTCCATATTTGAATGAAAGGTTTTCCAG
CAAAGTTCGAAACATGTGATCAGTTGAGGACGTTCTTGAAACGCTTTCTG
TGGATTAACTTGTTCCATACTTCAGCAAATTATCCTGATTACAGAGATTT
CATGCCAACTTCACCTACTCGGCTTTATCAAAATCTCGATGGAACAGACC
TGCCCTTATTGAAGGCTCTTACTGGGAAACTTTACAATGTTATGAAAGAA
TACGAGATTTTCATCGATGACATCATCAAGACTTATTACAGAAGAGGAAG
AATTCACAGGGACGCTGAATTACAATCATGGGCTAACGAGTTGTCGCCTG
AAGGAACGGTTCAACCTGATGCTGGGCGAGGAAAGCAATATATGATGTTC
AGAGGTTTGCTAGCAAATTTCCGAGTGAACAGGATTTTCTCATACTGGAA
AGACATCACAAACCCGACATACCGACGAATTGTGCGCAAAGCTTTTTACC
GTTTGAACACCATCGTCCAAAAGAAGTTAGAAGCAAGAAATGCTGAACGT
AAAGCCAAAAATCAATTGGGTTATCAAATCATGGAACCGAAATGGCTGAC
GAATAGCGTCCATATTTGAATGAAAGGTTTTCCAGCAAAGTTCGAAACAT
GTGATCAGTTGAGGACGTTCTTGAAACGCTTTCTGTGGATTAACTTGTTC
CATACTTCAGCAAATTATCCTGATTACAGAGATTTCATGCCAACTTCACC
TACTCGGCTTTATCAAAATCTCGATGGAACAGACCTGCCCTTATTGAAGG
CTCTTACTGGGAAACTTTACAATGTTATGAAAGAATACGAGATTTTCATC
GATGACATCATCAAGACTTATTACAGAAGAGGAAGAATTCACAGGGACGC
TGAATTACAATCATGGGCTAACGAGTTGTCGCCTGAAGGAACGGTTCAAC
CTGATGCTGGGCGAGGAAAGCAATATATGATGTTCAGAGGTTTGCTAGCA
AATTTCCGAGTGAACAGGATTTTCTCATACTGGAAAGACATCACAAACCC
GACATACCGACGAATTGTGCGCAAAGCTTTTTACCGTTTGAACACCATCG
TCCAAAAGAAGTTAGAAGCAAGAAATGCTGAACGTAAAGCCAAAAATCAA
TTGGGTTATCAAATCATGGAACCGAAATGGCTGACGAATAGCGTCCATAT
TTGAATGAAAGGTTTTCCAGCAAAGTTCGAAACATGTGATCAGTTGAGGA
CGTTCTTGAAACGCTTTCTGTGGATTAACTTGTTCCATACTTCAGCAAAT
TATCCTGATTACAGAGATTTCATGCCAACTTCACCTACTCGGCTTTATCA
AAATCTCGATGGAACAGACCTGCCCTTATTGAAGGCTCTTACTGGGAAAC
TTTACAATGTTATGAAAGAATACGAGATTTTCATCGATGACATCATCAAG
ACTTATTACAGAAGAGGAAGAATTCACAGGGACGCTGAATTACAATCATG
GGCTAACGAGTTGTCGCCTGAAGGAACGGTTCAACCTGATGCTGGGCGAG
GAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1360MSTRG.1360Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1360.2.p2.exon9MSTRG.1360.2.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon8MSTRG.1360.2.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon7MSTRG.1360.2.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon6MSTRG.1360.2.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon5MSTRG.1360.2.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon4MSTRG.1360.2.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon3MSTRG.1360.2.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon2MSTRG.1360.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1360.2.p2.exon1MSTRG.1360.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1360.2.p2MSTRG.1360.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:2412404..2418169 -