MSTRG.13593.1.p1 (mRNA) -

Overview
NameMSTRG.13593.1.p1
Unique NameMSTRG.13593.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000109_pilon:17813..20925+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13593.1.p1 ID=MSTRG.13593.1.p1|Name=MSTRG.13593.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3113bp|location=Sequence derived from alignment at sc0000109_pilon:17813..20925+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTAcagattaaaataattaataaagaaataaagaaaaaagcaaaatgtc
agaaaatactacaaaaagagagaaaattgcCCAGATGTCTTCTGAGGTTG
TGGATAGTAATCCATATAggtatattttattatttcatctTGTCTTTCTA
TCATTAATTTGTCTTATAATTTTAGCATATTTTGGTGCACGTGCTACTGT
ACTTGATCAGTTTTGTTTTTAGGAAGCTCTAGTCTACAGCTATTGGCTGT
AGttataaatcaatttttggttGACGTGAATGTctgttttcttcaaaagt
tGTCTTATGATTGTGACTATCTTCTGGGTTATGGCTGTTTATAACCTTAG
TTAAAAATCTATTATCAATCCTTACAACACtttggttttttttataaatt
gtgATTAGTTTTACTTCTTTAgttgttctttttcttcaattaCACTCGAC
TTTAAAAATCATTAGATATATTAGCACAGTTTAGTGGCCAATATACCCAA
TATACTATAATCCTGTACAATTTTGTAATGGTTCAAATTTTCTCGCAAAA
CAGAATATCAGAGACTATATCAGGCTTATACTTTGTTAAAATTGTAAGAA
CAATCGAGCTctagttttttcatttcaagatAATCcacttttttgttcaa
aaaactcaacatgatttttttttaactttcagtCGTTTGATGGCTCTGAA
AAGGATGGGAATAGTTGATAATTATGAGGTAGGgcatcatttaaaaaatt
tatacgtcaaaaataaaatgtataaaaggaaccaagaaattaaattttat
ataaCCTTGCTATACATTCTTTTCAGTTTTGATTATTTGTCATATTTGCA
AGAAAAATGTAGAAATGTATAAAATCGGAACACGAAATGATAAAAACGTT
TTCTAAGAAAGTgggaaaatattgattttaagTCATGTGGCTTTTTTATG
ATCATATTATGATTTAGTCAAACATACAGCAATGCACAAAGTTCATTTGT
CTCGTCTTTATCATTCCGTTCTTCACAATTTGGAGAATCCAGGTTTATTT
TTGTGTAGGATTAAGTTTCCTTCTGAAATTATTGAAATTCTAATTTAAAG
AtccaaatttacaaaaagttaTTCCCCTCTTTTTCAGCGTATTCGTGATT
ACAGCATTGCAGTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGAA
ATGTTGACCAGGTGTGGTATAGGAAAGGTAACGTAATGTGTTTTTAGGTT
Agatattaaaaatcaaatatataaaaacagcttttaatttacaagctatt
tcacattggattggcacagatgtggagcaagatgatTAGAAAGAGGggaa
gaaaaacagtttttatcAGCATagtataacaataggcagacactgtcttg
atttgaaatatgtgtctcatatgaaacgggaacacttatgtaaaaataaa
acctttaaaataattaCATTTCGATGATAACATTTTAAAGGTCGTTTTCA
GGTATTCAATCAtcgaattttagattttttacaattttagattttatgac
TGGGCTAATCAATAACAAATTTAATCGAGGTGTTAAATTCTTTTTGGAAG
CTCTCAATCCCCTAGactttgataaatttattaCTGATCCCAGCATTTCC
AAAGAAATACTGAAAATACTATATTTCAACTTTTCCTCTACTTTAGCTAA
TTATGTTTGATTATGACAAAGTAGAACTTGCAAATATGAACAGGTATGTC
TGCTTTCTAATCAAAATGCAAAGTACCCCTAGTCTCTTTCAATTTCTATC
TTTTAAAAGTTAAGTATCCAAGGTTGCAGAAAGTGGTTGCCATCAACTTT
TTATCagagttttataaatttttgggaTCTAAGTATTTAACTTTTCTTCT
GATTCTAGACTGTTTTTTCGACCTGATCAATCTGGGATGAGTAAAGTTGA
TGCAGCTGTAAATACGTTAAggtttggaattttttattgaagACCAAAAT
ATTCTATCTGTACTCATGGGTAATCATCTCATGTTGGTTAAAATTTTGGA
GGTTTTTGCATCTAACCAACAGCAAGCCGTTATGagggcgcaatcagtcc
tgattactaATGATTCATTTGAAATGATCCTATATTTGTCgtgtatattt
tttatgattcaGCACTACtataggctgcatgcatcccctctgatatgttt
tgataggGGGTgagtatcgtgtatgaaattctccTCCAAGAGTTACCCCC
GTCTtcgtgtttttgagttttagaaacttggtTAGCTTGTGATTTTCAAT
ACCGTCGCCGAAAAAGGAATCTCATCATAAGTAAACTTCAAATGGTTGat
aggtataaagaaaaacttcTCCAAATAATCGAAGTCTCATAGTTTGAATT
TAATAACAGTATTTTTTATTCCCTATTTTTAGGGATATAAACCCTGATGT
AGAGTTCGAAGCACACAATTACAATATTACTAGTGTAGATAATTTCAATC
ATTTCATGGGCAGAATAAAGTAAGATAAGTgttgatttatatttttaaat
gttgtgcttgttttaaaattttgttttgaaacaccaaaaatggtttttaG
TAATTCTTTTCCCAGGCCCTTAAATCTGGCTAAATGTTTTATTATTATGG
TCAAAGTACACTTGACACGtttttttAGATCAGGTGGCTTGAACGGAAAG
CCAGTCGATTTGGTATTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGC
TATTAACACTGTAAGTAAGATCTATTTTTCTGTTCTAGTTTTCCATCGTT
TACCCCGTGAAATTAAGCTTTATATCCTAAACCCCATTATTTCTCCTGAA
TTCCCCTTTCAAAAGGTACTCTGATCTTACAAGACTTCTTCCGtctccaa
tattttataataggaataaaattaaaatattgtttttaagGCGTGTAATG
AAATCGGTCAAGCATGGATGGAATCAGGGGTCAGTGAGAATGCTGTATCA
GGACATGTTCAAGTCATATTACCTGGTGAAACAGCTTGTTTTCGCTGTAA
GTAGTCTATATGTCACCATCTGCACAGATATCTTATTTAAAACACTAGAT
GGAGCCACTCTGT

Coding sequence (CDS) from alignment at sc0000109_pilon:17813..20925+

>MSTRG.13593.1.p1 ID=MSTRG.13593.1.p1|Name=MSTRG.13593.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4824bp|location=Sequence derived from alignment at sc0000109_pilon:17813..20925+ (Clytia hemisphaerica_ch_hm2_pilon)
atgtcagaaaatactacaaaaagagagaaaattgcCCAGATGTCTTCTGA
GGTTGTGGATAGTAATCCATATAgtCGTTTGATGGCTCTGAAAAGGATGG
GAATAGTTGATAATTATGAGCGTATTCGTGATTACAGCATTGCAGTAGTT
GGGATTGGAGGTGTGGGCAGTGTTACTTCAGAAATGTTGACCAGGTGTGG
TATAGGAAAGCTAATTATGTTTGATTATGACAAAGTAGAACTTGCAAATA
TGAACAGACTGTTTTTTCGACCTGATCAATCTGGGATGAGTAAAGTTGAT
GCAGCTGTAAATACGTTAAgGGATATAAACCCTGATGTAGAGTTCGAAGC
ACACAATTACAATATTACTAGTGTAGATAATTTCAATCATTTCATGGGCA
GAATAAAATCAGGTGGCTTGAACGGAAAGCCAGTCGATTTGGTATTGAGT
TGTGTTGATAATTTCGAAGCAAGAATGGCTATTAACACTGCGTGTAATGA
AATCGGTCAAGCATGGATGGAATCAGGGGTCAGTGAGAATGCTGTATCAG
GACATGTTCAAGTCATATTACCTGGTGAAACAGCTTGTTTTCGCTGTAAG
TAGatgtcagaaaatactacaaaaagagagaaaattgcCCAGATGTCTTC
TGAGGTTGTGGATAGTAATCCATATAgtCGTTTGATGGCTCTGAAAAGGA
TGGGAATAGTTGATAATTATGAGCGTATTCGTGATTACAGCATTGCAGTA
GTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGAAATGTTGACCAGGTG
TGGTATAGGAAAGCTAATTATGTTTGATTATGACAAAGTAGAACTTGCAA
ATATGAACAGACTGTTTTTTCGACCTGATCAATCTGGGATGAGTAAAGTT
GATGCAGCTGTAAATACGTTAAgGGATATAAACCCTGATGTAGAGTTCGA
AGCACACAATTACAATATTACTAGTGTAGATAATTTCAATCATTTCATGG
GCAGAATAAAATCAGGTGGCTTGAACGGAAAGCCAGTCGATTTGGTATTG
AGTTGTGTTGATAATTTCGAAGCAAGAATGGCTATTAACACTGCGTGTAA
TGAAATCGGTCAAGCATGGATGGAATCAGGGGTCAGTGAGAATGCTGTAT
CAGGACATGTTCAAGTCATATTACCTGGTGAAACAGCTTGTTTTCGCTGT
AAGTAGatgtcagaaaatactacaaaaagagagaaaattgcCCAGATGTC
TTCTGAGGTTGTGGATAGTAATCCATATAgtCGTTTGATGGCTCTGAAAA
GGATGGGAATAGTTGATAATTATGAGCGTATTCGTGATTACAGCATTGCA
GTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGAAATGTTGACCAG
GTGTGGTATAGGAAAGCTAATTATGTTTGATTATGACAAAGTAGAACTTG
CAAATATGAACAGACTGTTTTTTCGACCTGATCAATCTGGGATGAGTAAA
GTTGATGCAGCTGTAAATACGTTAAgGGATATAAACCCTGATGTAGAGTT
CGAAGCACACAATTACAATATTACTAGTGTAGATAATTTCAATCATTTCA
TGGGCAGAATAAAATCAGGTGGCTTGAACGGAAAGCCAGTCGATTTGGTA
TTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGCTATTAACACTGCGTG
TAATGAAATCGGTCAAGCATGGATGGAATCAGGGGTCAGTGAGAATGCTG
TATCAGGACATGTTCAAGTCATATTACCTGGTGAAACAGCTTGTTTTCGC
TGTAAGTAGatgtcagaaaatactacaaaaagagagaaaattgcCCAGAT
GTCTTCTGAGGTTGTGGATAGTAATCCATATAgtCGTTTGATGGCTCTGA
AAAGGATGGGAATAGTTGATAATTATGAGCGTATTCGTGATTACAGCATT
GCAGTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGAAATGTTGAC
CAGGTGTGGTATAGGAAAGCTAATTATGTTTGATTATGACAAAGTAGAAC
TTGCAAATATGAACAGACTGTTTTTTCGACCTGATCAATCTGGGATGAGT
AAAGTTGATGCAGCTGTAAATACGTTAAgGGATATAAACCCTGATGTAGA
GTTCGAAGCACACAATTACAATATTACTAGTGTAGATAATTTCAATCATT
TCATGGGCAGAATAAAATCAGGTGGCTTGAACGGAAAGCCAGTCGATTTG
GTATTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGCTATTAACACTGC
GTGTAATGAAATCGGTCAAGCATGGATGGAATCAGGGGTCAGTGAGAATG
CTGTATCAGGACATGTTCAAGTCATATTACCTGGTGAAACAGCTTGTTTT
CGCTGTAAGTAGatgtcagaaaatactacaaaaagagagaaaattgcCCA
GATGTCTTCTGAGGTTGTGGATAGTAATCCATATAgtCGTTTGATGGCTC
TGAAAAGGATGGGAATAGTTGATAATTATGAGCGTATTCGTGATTACAGC
ATTGCAGTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGAAATGTT
GACCAGGTGTGGTATAGGAAAGCTAATTATGTTTGATTATGACAAAGTAG
AACTTGCAAATATGAACAGACTGTTTTTTCGACCTGATCAATCTGGGATG
AGTAAAGTTGATGCAGCTGTAAATACGTTAAgGGATATAAACCCTGATGT
AGAGTTCGAAGCACACAATTACAATATTACTAGTGTAGATAATTTCAATC
ATTTCATGGGCAGAATAAAATCAGGTGGCTTGAACGGAAAGCCAGTCGAT
TTGGTATTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGCTATTAACAC
TGCGTGTAATGAAATCGGTCAAGCATGGATGGAATCAGGGGTCAGTGAGA
ATGCTGTATCAGGACATGTTCAAGTCATATTACCTGGTGAAACAGCTTGT
TTTCGCTGTAAGTAGatgtcagaaaatactacaaaaagagagaaaattgc
CCAGATGTCTTCTGAGGTTGTGGATAGTAATCCATATAgtCGTTTGATGG
CTCTGAAAAGGATGGGAATAGTTGATAATTATGAGCGTATTCGTGATTAC
AGCATTGCAGTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGAAAT
GTTGACCAGGTGTGGTATAGGAAAGCTAATTATGTTTGATTATGACAAAG
TAGAACTTGCAAATATGAACAGACTGTTTTTTCGACCTGATCAATCTGGG
ATGAGTAAAGTTGATGCAGCTGTAAATACGTTAAgGGATATAAACCCTGA
TGTAGAGTTCGAAGCACACAATTACAATATTACTAGTGTAGATAATTTCA
ATCATTTCATGGGCAGAATAAAATCAGGTGGCTTGAACGGAAAGCCAGTC
GATTTGGTATTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGCTATTAA
CACTGCGTGTAATGAAATCGGTCAAGCATGGATGGAATCAGGGGTCAGTG
AGAATGCTGTATCAGGACATGTTCAAGTCATATTACCTGGTGAAACAGCT
TGTTTTCGCTGTAAGTAGatgtcagaaaatactacaaaaagagagaaaat
tgcCCAGATGTCTTCTGAGGTTGTGGATAGTAATCCATATAgtCGTTTGA
TGGCTCTGAAAAGGATGGGAATAGTTGATAATTATGAGCGTATTCGTGAT
TACAGCATTGCAGTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTCAGA
AATGTTGACCAGGTGTGGTATAGGAAAGCTAATTATGTTTGATTATGACA
AAGTAGAACTTGCAAATATGAACAGACTGTTTTTTCGACCTGATCAATCT
GGGATGAGTAAAGTTGATGCAGCTGTAAATACGTTAAgGGATATAAACCC
TGATGTAGAGTTCGAAGCACACAATTACAATATTACTAGTGTAGATAATT
TCAATCATTTCATGGGCAGAATAAAATCAGGTGGCTTGAACGGAAAGCCA
GTCGATTTGGTATTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGCTAT
TAACACTGCGTGTAATGAAATCGGTCAAGCATGGATGGAATCAGGGGTCA
GTGAGAATGCTGTATCAGGACATGTTCAAGTCATATTACCTGGTGAAACA
GCTTGTTTTCGCTGTAAGTAGatgtcagaaaatactacaaaaagagagaa
aattgcCCAGATGTCTTCTGAGGTTGTGGATAGTAATCCATATAgtCGTT
TGATGGCTCTGAAAAGGATGGGAATAGTTGATAATTATGAGCGTATTCGT
GATTACAGCATTGCAGTAGTTGGGATTGGAGGTGTGGGCAGTGTTACTTC
AGAAATGTTGACCAGGTGTGGTATAGGAAAGCTAATTATGTTTGATTATG
ACAAAGTAGAACTTGCAAATATGAACAGACTGTTTTTTCGACCTGATCAA
TCTGGGATGAGTAAAGTTGATGCAGCTGTAAATACGTTAAgGGATATAAA
CCCTGATGTAGAGTTCGAAGCACACAATTACAATATTACTAGTGTAGATA
ATTTCAATCATTTCATGGGCAGAATAAAATCAGGTGGCTTGAACGGAAAG
CCAGTCGATTTGGTATTGAGTTGTGTTGATAATTTCGAAGCAAGAATGGC
TATTAACACTGCGTGTAATGAAATCGGTCAAGCATGGATGGAATCAGGGG
TCAGTGAGAATGCTGTATCAGGACATGTTCAAGTCATATTACCTGGTGAA
ACAGCTTGTTTTCGCTGTAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13593MSTRG.13593Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13593.1.p1MSTRG.13593.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13593.1.p1.exon1MSTRG.13593.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon2MSTRG.13593.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon3MSTRG.13593.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon4MSTRG.13593.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon5MSTRG.13593.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon6MSTRG.13593.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon7MSTRG.13593.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13593.1.p1.exon8MSTRG.13593.1.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109_pilongenomesc0000109_pilon:17813..20925 +