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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000108_pilon:1067170..1071840+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13578.43.p1 ID=MSTRG.13578.43.p1|Name=MSTRG.13578.43.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4671bp|location=Sequence derived from alignment at sc0000108_pilon:1067170..1071840+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTATGAAAAATATCGAACAACATAATCAATGGATCAAAACTTATTTG
AAACAATTATCTTCCGTAAAAGCTGACAAAACTGACGTCGAAGGTGAGTT
GCATTGGTTTTAATGTCGTCGAAAGCACATTTACTTTTTTACCTCTGTTG
AATTTATGACATCCTAAGAGCTGAATCTTGTTAACTTTTAACCTCTTGAC
ACTGAATTCTGGTGTCATTGAATATcagtttttgttttactttagaTCTA
GCCAAGTCAATGAATATGAAAGCTGATAAAGATGAAATGGATggtatgtt
ttgtttctttacTTGTTTTATATTTTGGAGGAAATTGTAACCTCAAAAGC
ATATCTGATAATTAATATCTAATAAAAAGTTGGAGGCTACCCGGGTATCT
ACCTTAAAAAGCCTCTCTGAAGATTGTCTAATAAAAAGTAGGAGGCATCG
CCAAGTTGACGTTCTAAATAAAACTGATCCTTTTGAAAAATATTCATTTC
TTCTTGTTATATATGTTACAGTTTTTAGACATCCTCTGTATTATAAGAAG
CTTTTTGTAATATATTTTCACTATCTTTCTGTCTGAATAGGCATTTACCG
ATAAAAATCACTATTTGTTTTACTGCAGGTTTAGCCAAGTCAATGGATAG
TAGACTGAATACGAAGGCTGATAAAGATGAAATGGATggtatgttttatt
tatttacttattttatAGTTTGGAGTAAATAGTATCCACTTTAAAAGCCT
ATCCGATGATTGTCTaaaaaaaTTAGGAGACATCGCCAAGTTGACGTTCT
AAATGAAATCGctccttataaaaaatattgaatttttctgtttgaataGA
CATTTCCCGATAAATATCACTATCTTATATTTACTATTTACTTTAGGTTT
AGCCAAGTCAATGAATACGAAAGCTGATAAAGATGAAATTCatggtattt
tttgtttgtttaattctttttggacctacctccgggtgccccggtggagg
ttctataaattaacccatgtccgttcgtccgttcgtccgttcgttcgtcc
gtctgttcgtccgtctgttaccagcttttctcaggattggctcattagtt
ttttctggttGTTTGCagaatgatgcaaaatggcaatgcccagaacgtga
cggagcccgatttttgagaaaaaatttatttgggcaaatttgggccaaaa
actacctaaaaatagggttttttgaactttgtgcaaaatcctgttattac
ttttttctgattttttgtacaaagatggagggcaagattctctaaagaat
ggctgaagtggtttttcccggaaaattcttattcgcctgaaaaaacggat
tttcgtattttgggggaaattccctttaaccaaataagaaaatatagctt
ttaagaatgttgactcattatttttttctgattttttgcacaatgatgca
aaatggcaatgcctaaaatgagTTGGAGCCCGgttttcgaataaaaatat
atttgggcaaatttgggccaaaaactgcctaaaaatagggtttttggact
ttgtgcaaaatcctgtttttacttttttctgattttttgtacaaagatgg
agggcaagattctctaaagaatggctgaagtggtttttcccgggaaattc
ttattcgccttaaaagacggattttcgtattttggggaaattccctttaa
ccaaataagaaaatacagcttttctcaatgttgactcataatctttttct
gatttttttgcacaatgatgcaaaatggcaatgcccaaaatgtgacggag
ccagatttaaaaaaaaaataaattattttgggcaaatttgggccaaaaac
agctgaaaaggtttttttgggcctaagtgattttcgtatttggggaaatt
cctttttaccattttacaagCGAAATTGACGTTGAAGGCTGACATGTGCC
AAATTGATGGTAAAGTTATACCAGATAAATTTGTTGTGTTTGTCGAATGT
TTTTTCCTCCTCTTTTGAGGTGGTCTGCTAGcaacttttttcatcaaaat
aaaactttagCGTTATTCAGATTTCAAATGCTTCTAGTCGATGAAAAATG
TGTGTTCCGAGACCTTTACAAATTTCCTCTGTTGTCTACACgaagtttat
ttttattcttttaacgGAATATTGCTGAATAAGAAGGCCTTTTctgataa
atataatttttggacctaccccggtggggtgtaggtcctataaattaacc
tgttttcgttcgttcgttcgtccgtccgttcgtccgttcgtctgttacca
acttttctcaggattgagtcataggaattttttgatttttggtaaaaaag
gTGCGAAAtggtgatggccaaaatgtgacggagcccgattttcaaaaaaa
agttttggggcaaatttggaccATAAAACGGCTAAAgaacggtttttttg
gactttgtgaaaaattggatcattaattttttcggattttttgcatgaaa
gtagggtaccatcataggtaaaagatggctcaagcagatttttgcaaaca
aattttgttggctcaaaaaacgcatgtgtatctataagaatcactattaa
taagcatacatcaatgttcgtagtcaaattactcaattttttatgagata
gatgtttttttgctcatgagggcttacttttgaagaatgaaattttggct
gcttgacgtgtttttatagaaaaactggccaaattcgatatctttttata
agcacattatcaataattacttaggtattagcttttcaagagattggctc
tttcattcttaatgattttttgcacaaagatgcataactataaaccctcg
aatgtgacggagcccgattttcgaaaaaagtgtttttgggcaaatttgag
ccaaaaaaaggctaaaaaaacgggtttgattttttgcatgaaagtaggta
aaagatggttcatttttgtgaaaaagtgaattttcagctcaaaaaacgca
tctttatctataagaatcactattaataagcatacatcaatgttcgtagt
caaattactcaattttttatgagatagatgtttttttgctcatgagggct
tacttttgaagaatgaaattttggctgcttgacgtgtttttatagaaaaa
ctggccaaattcgatatctttttataagcacattatcaataattacttag
gtattagcttttcaagaaattggctctttcattcttaatgattttttgca
caaagatgcataactataaaccctcgaatgtgacggagcccgattttcga
aaaaagtgtttttgggcaaatttgagccaaaaaaaggctaaaaaaacggg
tttgattttttgcatgaaagtaggtaaaagatggttcatttttgtgaaaa
agtgaattttcagctcaaaaaacgcatctttatctataagaatctttatt
aataagcatacatcaatgttattagccaaataactttttttgctcacgaa
gtcttgaacatgaaagaatatttcaagagcatataagaaacaaacgattA
ATTTTAATAGATAGTCACTATTTCTTCTGAATAATTgcttaatggtcacg
ctcacgtagatatcaattatatatgtgttaaatgcataaccaggtaggtc
cataaaagtatcacttgttttttacAGAATTAAGCAACAAAGTTGATCAG
CTATCAATGGAATCAAAATCTCTAAAGGGTAAAGCTTTAGCTATGATTGC
TATTTTCTCTATCCATGCTTAACCCTAATCGTACTAAggggggggTTGCT
TCTGTTTGGAGGTCAGATTAATGGTAATAGCTATATATAATAGATTTTAG
ACTCAgccaacttttttctaaagcctttgttagattGCATTAgctattta
taaaaacaaaggaaattttcagcagaaagattttttgtcaaaagttgcct
taTATGACAAGGTTCTTGTATGCCAAATTTCATTCCAAAAGAACCACTAA
ATCAAAAGTTAATGGGTGGTACAAGAAAacccccctagttttgaactgCC
CCTAAATTTATTCAAAGAAACTTTATTTGTTATTTGTCACCTTTTTTGTA
TTCATTCTAGACACAACAAAGACACATTGGAATTTGCCAGACCCTGTTTC
CATCTTCTTTGGACgagaaaatttgattaaatcCATTCACTTGAAACTTC
AACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACA
CAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGAATATCAGAAGAT
ATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGAACGAGATTTTGT
GTGCATTTGGCTGTAAACAACTAATACCTGATGAACCTTCGATGGAAACT
CTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCT
GGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCTTTCA
TTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACATCCCAATTGAAA
GATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCCATGTTTCCATGA
ACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAGCCAACCAAC
ATGAAATCTCCATTTTAGCGA Coding sequence (CDS) from alignment at sc0000108_pilon:1067170..1071840+ >MSTRG.13578.43.p1 ID=MSTRG.13578.43.p1|Name=MSTRG.13578.43.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5148bp|location=Sequence derived from alignment at sc0000108_pilon:1067170..1071840+ (Clytia hemisphaerica_ch_hm2_pilon)
GCTATGAAAAATATCGAACAACATAATCAATGGATCAAAACTTATTTGAA
ACAATTATCTTCCGTAAAAGCTGACAAAACTGACGTCGAAGaTCTAGCCA
AGTCAATGAATATGAAAGCTGATAAAGATGAAATGGATgGTTTAGCCAAG
TCAATGGATAGTAGACTGAATACGAAGGCTGATAAAGATGAAATGGATgG
TTTAGCCAAGTCAATGAATACGAAAGCTGATAAAGATGAAATTCatgAAT
TAAGCAACAAAGTTGATCAGCTATCAATGGAATCAAAATCTCTAAAGGAC
ACAACAAAGACACATTGGAATTTGCCAGACCCTGTTTCCATCTTCTTTGG
ACgagaaaatttgattaaatcCATTCACTTGAAACTTCAACAAAATCAAG
CAATTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCA
AAGTTCGTTCAAATACACAAGGATGAATATCAGAAGATATTTTGGATTTC
TGCTGTCAGCCTCAAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGCT
GTAAACAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATT
TTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCTGGTTTTATTGGA
TGACGTCACTGAGGTCACAAAAGACGTCACTTCTTTCATTCGaaatgtga
aagaaaaaatcaacttaTTGTTGACATCCCAATTGAAAGATTGGGAAGAT
TATGGTTTGTTTCAAATTGCTGTTCCATGTTTCCATGAACAAGAATCCAT
TGGCTTCTTACAGAATGAACTTTCTTCAGCCAACCAACATGAAATCTCCA
TTTTAGCGGCTATGAAAAATATCGAACAACATAATCAATGGATCAAAACT
TATTTGAAACAATTATCTTCCGTAAAAGCTGACAAAACTGACGTCGAAGa
TCTAGCCAAGTCAATGAATATGAAAGCTGATAAAGATGAAATGGATgGTT
TAGCCAAGTCAATGGATAGTAGACTGAATACGAAGGCTGATAAAGATGAA
ATGGATgGTTTAGCCAAGTCAATGAATACGAAAGCTGATAAAGATGAAAT
TCatgAATTAAGCAACAAAGTTGATCAGCTATCAATGGAATCAAAATCTC
TAAAGGACACAACAAAGACACATTGGAATTTGCCAGACCCTGTTTCCATC
TTCTTTGGACgagaaaatttgattaaatcCATTCACTTGAAACTTCAACA
AAATCAAGCAATTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAA
CTGCTGCAAAGTTCGTTCAAATACACAAGGATGAATATCAGAAGATATTT
TGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGAACGAGATTTTGTGTGC
ATTTGGCTGTAAACAACTAATACCTGATGAACCTTCGATGGAAACTCTGA
CTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCTGGTT
TTATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCTTTCATTCG
aaatgtgaaagaaaaaatcaacttaTTGTTGACATCCCAATTGAAAGATT
GGGAAGATTATGGTTTGTTTCAAATTGCTGTTCCATGTTTCCATGAACAA
GAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAGCCAACCAACATGA
AATCTCCATTTTAGCGGCTATGAAAAATATCGAACAACATAATCAATGGA
TCAAAACTTATTTGAAACAATTATCTTCCGTAAAAGCTGACAAAACTGAC
GTCGAAGaTCTAGCCAAGTCAATGAATATGAAAGCTGATAAAGATGAAAT
GGATgGTTTAGCCAAGTCAATGGATAGTAGACTGAATACGAAGGCTGATA
AAGATGAAATGGATgGTTTAGCCAAGTCAATGAATACGAAAGCTGATAAA
GATGAAATTCatgAATTAAGCAACAAAGTTGATCAGCTATCAATGGAATC
AAAATCTCTAAAGGACACAACAAAGACACATTGGAATTTGCCAGACCCTG
TTTCCATCTTCTTTGGACgagaaaatttgattaaatcCATTCACTTGAAA
CTTCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGTGTGGGGAA
AACACAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGAATATCAGA
AGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGAACGAGATT
TTGTGTGCATTTGGCTGTAAACAACTAATACCTGATGAACCTTCGATGGA
AACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAAT
CGCTGGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCT
TTCATTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACATCCCAATT
GAAAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCCATGTTTCC
ATGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAGCCAAC
CAACATGAAATCTCCATTTTAGCGGCTATGAAAAATATCGAACAACATAA
TCAATGGATCAAAACTTATTTGAAACAATTATCTTCCGTAAAAGCTGACA
AAACTGACGTCGAAGaTCTAGCCAAGTCAATGAATATGAAAGCTGATAAA
GATGAAATGGATgGTTTAGCCAAGTCAATGGATAGTAGACTGAATACGAA
GGCTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAATGAATACGAAAG
CTGATAAAGATGAAATTCatgAATTAAGCAACAAAGTTGATCAGCTATCA
ATGGAATCAAAATCTCTAAAGGACACAACAAAGACACATTGGAATTTGCC
AGACCCTGTTTCCATCTTCTTTGGACgagaaaatttgattaaatcCATTC
ACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGT
GTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGA
ATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGA
ACGAGATTTTGTGTGCATTTGGCTGTAAACAACTAATACCTGATGAACCT
TCGATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTC
CAAAAAATCGCTGGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACG
TCACTTCTTTCATTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACA
TCCCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCC
ATGTTTCCATGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTT
CAGCCAACCAACATGAAATCTCCATTTTAGCGGCTATGAAAAATATCGAA
CAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCTTCCGTAAA
AGCTGACAAAACTGACGTCGAAGaTCTAGCCAAGTCAATGAATATGAAAG
CTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAATGGATAGTAGACTG
AATACGAAGGCTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAATGAA
TACGAAAGCTGATAAAGATGAAATTCatgAATTAAGCAACAAAGTTGATC
AGCTATCAATGGAATCAAAATCTCTAAAGGACACAACAAAGACACATTGG
AATTTGCCAGACCCTGTTTCCATCTTCTTTGGACgagaaaatttgattaa
atcCATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGTGAAA
TGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAATACAC
AAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAA
ATCTTTGAACGAGATTTTGTGTGCATTTGGCTGTAAACAACTAATACCTG
ATGAACCTTCGATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGT
GAAGGCTCCAAAAAATCGCTGGTTTTATTGGATGACGTCACTGAGGTCAC
AAAAGACGTCACTTCTTTCATTCGaaatgtgaaagaaaaaatcaacttaT
TGTTGACATCCCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCAAATT
GCTGTTCCATGTTTCCATGAACAAGAATCCATTGGCTTCTTACAGAATGA
ACTTTCTTCAGCCAACCAACATGAAATCTCCATTTTAGCGGCTATGAAAA
ATATCGAACAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCT
TCCGTAAAAGCTGACAAAACTGACGTCGAAGaTCTAGCCAAGTCAATGAA
TATGAAAGCTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAATGGATA
GTAGACTGAATACGAAGGCTGATAAAGATGAAATGGATgGTTTAGCCAAG
TCAATGAATACGAAAGCTGATAAAGATGAAATTCatgAATTAAGCAACAA
AGTTGATCAGCTATCAATGGAATCAAAATCTCTAAAGGACACAACAAAGA
CACATTGGAATTTGCCAGACCCTGTTTCCATCTTCTTTGGACgagaaaat
ttgattaaatcCATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTT
GAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTC
AAATACACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGC
CTCAAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGCTGTAAACAACT
AATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTCCTCTCTA
AGATTTGTGAAGGCTCCAAAAAATCGCTGGTTTTATTGGATGACGTCACT
GAGGTCACAAAAGACGTCACTTCTTTCATTCGaaatgtgaaagaaaaaat
caacttaTTGTTGACATCCCAATTGAAAGATTGGGAAGATTATGGTTTGT
TTCAAATTGCTGTTCCATGTTTCCATGAACAAGAATCCATTGGCTTCTTA
CAGAATGAACTTTCTTCAGCCAACCAACATGAAATCTCCATTTTAGCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108_pilon | genome | sc0000108_pilon:1067170..1071840 + |
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