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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000108_pilon:485210..488349+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13543.1.p1 ID=MSTRG.13543.1.p1|Name=MSTRG.13543.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3140bp|location=Sequence derived from alignment at sc0000108_pilon:485210..488349+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaatcgAAGCACGAGGAAGAAGCCATCCTTTTTCTACAAGTCAGCATCC
CAACAAGTCAAGGTCTGCAGCTCCACTTAGCATATTTTGATATCTACAAC
AAATCTAAAGATGTTTTCTCCAACTACACCAAGGAAAAGACCAAGatata
ataataacaacaaagTTCCAACCGGTATGCATGTAATCTTTCAAATATCA
TTCAAGCTTTTACATATAGACTATAGAGGGTAAAATGACCAGGCAGGTTA
ACGAATGAGAATGTCCATTTTAACTCAAATCTCTTCCTCCTCCTTGGAAA
CATTTTCAGGTGGGGATTCGAAggtttttagaaatttagatGGAATTTAC
TGAATACTGTAAGGTGAGCAGGGCTACTACATATGAAAAACTTACCATTT
TTGGTCAGACAAAAAGCTATCTTCTTTCAGCACTTTTATCAAGGAAAacg
agtgtatttttaagcaaatgTCTGGGAAAATTGTTCTGGGGAACTGCTGG
GAACCCTGCATCAAGTAATCTCAGGTATGGGTGGTGAAAGTGACTTTATC
TCAGGTGGGCTGAAGTGGAGGGGTGTTGAACACTATGGATAATTTTGTTT
GACATCATATGACCGGCCATCCTATAAATACTATTACCCCCGTTTTCCtt
tgaaagtaaatgtcatGGATGAAAGTGTGAATGCAGACAGATCTTAGATG
TAAAAAATGTGTGgttaaaaataaaagacaattgttttttgttttctaat
tATAGCCATAACTGGCTACACTTGATTGGGGTTACTCTCACGAGTAAGGG
GTAACTTTCATCTAGTCCAAACAGGAGACTGTTCTGGTATGCGATTTTTG
AATTCAGCTAGAATGTAAAGAAGTCATGTCATGACTTTCAGCTATTATAA
ATTGAGGATCAGAAAATATTATTGTCTGCAGGTAATGAAAGTTACCCTTA
ATTCCATTTCTGAGATGTCCTTAAATTCAATCCTAACTGATTTTGTCTTC
AGATTACTGATTACTGTACATGAAGCTAATGTCTTtctcttttttgttat
tttagaaACTGTTGATATGGTTGGGTATATCACTTGGGTTAAtccaaaaa
tttccaaatctgaGAAATCCTCATTTTTTGACCTATACCTTGGGCTAGAA
GAATCAGAGGTCCGAATTGTATCATTCAATACCGACATTCATTCCCAGTT
GATGAAACGGATGAAAAAAggtatcatttttttcaaactttccaaGTCTA
ATGCAGACTGGATATACAGTGACACTCATCACTCGTCTTTTAATGATAAG
GACCCGCCATTTGTATTTGTCAACCAATACAATGTTGTCAGCACGCCTTT
GAAAGAAGCAATCGAGGAAAAGCCACTCTACTCGAGAGTATCAATGGATA
TCAAAGTCATCCAAATCAAGGATGAAGGAATATCGAAGGAGGGGTTGCCT
TTTCAATCAGTTAGAATCATTGATAATTCCATTAAGGAACCTAGAATGTT
AACTTTGTTTGACAAACTTGTTACCAAAGTAGCTGTACAGTCATCCTACA
CATTGTCATATGTCTCAATTCAATTATTTGGTGGTCAAAGAGTATTCAAA
ACGACTGAAAGATCAACCATAACTACCATGAAGAAAGACACAATCAAATG
CCCAAAGCAAGATGCTGCTGAAGAATTGATTGGTACAGTCATTACTGTAA
ACTTGAAATCAGTTGAAGCCAAGCTCTGTTGCCCGCAGTGTGAAAACCCA
GTGAATTCCTCTGGCGGAATTTCCATTTTCTGTCATTTCTGTTCTGAAGC
GGTGTCCCGATCTAGATTGTTGAAAATGGGTGTATTGCAATTCAAAGTTC
TCGAGGACAATTGCAGACTCCCTCGAGCACTGGAGTGTTCCCACTTGAAc
attgagaaatttttgaatttctcattATCTGACACTGATAGATTTTTCTC
GATGTTCATGGATTCCAAGCTTGTTATCAAGCACCTCAAAGGTGAGGTTA
TTTTATTAAAACACTTTGAAAAAGACCAAAATTCAACATCAGCTCCCACT
GGTGGAAACTCTAAGAAAACTTAGAGCTTTGTTAACAtttttttAGTATC
AACGGATCTTatattttgttagttttttaacTGTTGTACATGTTAATATT
TGTTCCCATTTGAAcattgagaaatttttgaatttctcgtTATCTGACAC
TGATAGATTTTTCTCGATGTTCATGGATTCCAAGCTCGTTATCAAACACC
TCAAAGGTGAGGTTATTTTGTAAAAACACTTTGAAAAAGACCAAAATTCA
ACATCAGCTCCCGCTGGTGGAAACTCTAAGAAAACTTAGAGCtttattaa
catttttttaGTATCAACGGATCTTgtattttgttagttttttaacTGTT
GTACATGttaatattttattataacGAAAGTTCTTTCCTTTGTAATTTTA
AAGTTCTTGAGGACAATTGCCGACTTCCTCGTTCACTGGAGTGTtcccat
ttgaaaattttgaatttcaagttatCTGATACTGACGGATTGTTTGCATG
TTTATTGATTTTAAGCTCATTATCAAACACCTCAAAGGTGAGGTTATTTC
AATAAAACGTTTCGAAAAGGACTAACCTGCATCATCTGGTACAAACTCTT
TAAGAGCTTTATTACCATTTTTAAATTTAGTCTCAACTGATCCTACAttt
tgttaagatttctttttaagtgttttaaagttttctttcctttGCATCAC
AAGGTTTAAACCGATTATAAATGTATTTACAGACTTTACAAAGTTAGCAT
TACTTACATTTTAAGAGTTGTCCCAAACTCCTAACAGAACTGATGTCTGT
TCTGTAATCCTGTAGGTTTGatttttctcgtgtaattttactaagttttt
ccatttttgacattgtgtacattaacttatttttaaagccttattttaac
aaacatttgcatttttagcaaaaaaatttttttttttttttttgacattt
aatgtcaacttcttttgaaattaatatattttaCTACGTTTTACATATTT
AGCAAAAATGTTTCGtttttttGAAACATCATGTaaacttcttttgaaat
ttgttgcatttttaaaaagtaataatgCATTCAATGCTTT Coding sequence (CDS) from alignment at sc0000108_pilon:485210..488349+ >MSTRG.13543.1.p1 ID=MSTRG.13543.1.p1|Name=MSTRG.13543.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2166bp|location=Sequence derived from alignment at sc0000108_pilon:485210..488349+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTTCTCCAACTACACCAAGGAAAAGACCAAGatataataataacaa
caaagTTCCAACCGaaACTGTTGATATGGTTGGGTATATCACTTGGGTTA
AtccaaaaatttccaaatctgaGAAATCCTCATTTTTTGACCTATACCTT
GGGCTAGAAGAATCAGAGGTCCGAATTGTATCATTCAATACCGACATTCA
TTCCCAGTTGATGAAACGGATGAAAAAAggtatcatttttttcaaacttt
ccaaGTCTAATGCAGACTGGATATACAGTGACACTCATCACTCGTCTTTT
AATGATAAGGACCCGCCATTTGTATTTGTCAACCAATACAATGTTGTCAG
CACGCCTTTGAAAGAAGCAATCGAGGAAAAGCCACTCTACTCGAGAGTAT
CAATGGATATCAAAGTCATCCAAATCAAGGATGAAGGAATATCGAAGGAG
GGGTTGCCTTTTCAATCAGTTAGAATCATTGATAATTCCATTAAGGAACC
TAGAATGTTAACTTTGTTTGACAAACTTGTTACCAAAGTAGCTGTACAGT
CATCCTACACATTGTCATATGTCTCAATTCAATTATTTGGTGGTCAAAGA
GTATTCAAAACGACTGAAAGATCAACCATAACTACCATGAAGAAAGACAC
AATCAAATGCCCAAAGCAAGATGCTGCTGAAGAATTGATTGGTACAGTCA
TTACTGTAAACTTGAAATCAGTTGAAGCCAAGCTCTGTTGCCCGCAGTGT
GAAAACCCAGTGAATTCCTCTGGCGGAATTTCCATTTTCTGTCATTTCTG
TTCTGAAGCGGTGTCCCGATCTAGATTGTTGAAAATGGGTGTATTGCAAT
TCAAAGTTCTCGAGGACAATTGCAGACTCCCTCGAGCACTGGAGTGTTCC
CACTTGAAcattgagaaatttttgaatttctcattATCTGACACTGATAG
ATTTTTCTCGATGTTCATGGATTCCAAGCTTGTTATCAAGCACCTCAAAG
GTGAGGTTATTTTATTAAAACACTTTGAAAAAGACCAAAATTCAACATCA
GCTCCCACTGGTGGAAACTCTAAGAAAACTTAGATGTTTTCTCCAACTAC
ACCAAGGAAAAGACCAAGatataataataacaacaaagTTCCAACCGaaA
CTGTTGATATGGTTGGGTATATCACTTGGGTTAAtccaaaaatttccaaa
tctgaGAAATCCTCATTTTTTGACCTATACCTTGGGCTAGAAGAATCAGA
GGTCCGAATTGTATCATTCAATACCGACATTCATTCCCAGTTGATGAAAC
GGATGAAAAAAggtatcatttttttcaaactttccaaGTCTAATGCAGAC
TGGATATACAGTGACACTCATCACTCGTCTTTTAATGATAAGGACCCGCC
ATTTGTATTTGTCAACCAATACAATGTTGTCAGCACGCCTTTGAAAGAAG
CAATCGAGGAAAAGCCACTCTACTCGAGAGTATCAATGGATATCAAAGTC
ATCCAAATCAAGGATGAAGGAATATCGAAGGAGGGGTTGCCTTTTCAATC
AGTTAGAATCATTGATAATTCCATTAAGGAACCTAGAATGTTAACTTTGT
TTGACAAACTTGTTACCAAAGTAGCTGTACAGTCATCCTACACATTGTCA
TATGTCTCAATTCAATTATTTGGTGGTCAAAGAGTATTCAAAACGACTGA
AAGATCAACCATAACTACCATGAAGAAAGACACAATCAAATGCCCAAAGC
AAGATGCTGCTGAAGAATTGATTGGTACAGTCATTACTGTAAACTTGAAA
TCAGTTGAAGCCAAGCTCTGTTGCCCGCAGTGTGAAAACCCAGTGAATTC
CTCTGGCGGAATTTCCATTTTCTGTCATTTCTGTTCTGAAGCGGTGTCCC
GATCTAGATTGTTGAAAATGGGTGTATTGCAATTCAAAGTTCTCGAGGAC
AATTGCAGACTCCCTCGAGCACTGGAGTGTTCCCACTTGAAcattgagaa
atttttgaatttctcattATCTGACACTGATAGATTTTTCTCGATGTTCA
TGGATTCCAAGCTTGTTATCAAGCACCTCAAAGGTGAGGTTATTTTATTA
AAACACTTTGAAAAAGACCAAAATTCAACATCAGCTCCCACTGGTGGAAA
CTCTAAGAAAACTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108_pilon | genome | sc0000108_pilon:485210..488349 + |
|
