MSTRG.13503.4.p1 (mRNA) -

Overview
NameMSTRG.13503.4.p1
Unique NameMSTRG.13503.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000107_pilon:791344..796028-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13503.4.p1 ID=MSTRG.13503.4.p1|Name=MSTRG.13503.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4685bp|location=Sequence derived from alignment at sc0000107_pilon:791344..796028- (Clytia hemisphaerica_ch_hm2_pilon)
AAAGAGAGAAGAAAAATGGTTTCAATAATATTGATTGTTTTAATGGATTG
AATACTCTCTGACGCCTTTTGGTTCTATTGATTATCAACGATTTGACCAG
ATAGACCAGGGCCTTTGCACCAATCCTCAGAGTTGGATATTGTTCTAGGT
GGTATCTTGATATAGTTGATGACTGATTCTATTATCATTCTCTGATGTTT
TATTTTTTCTTCAAGGAATTGAAAGAGGTTTCAAGATATTACTCAAATGA
AGAAACTGCCGTTCCCCTTATCATGAGAGTTGTTTAACATTTATAAAGTT
ACAAAATGAAAACTGATTTCCCATCAAGATACAAAATGATGAAAAAATGG
GAAAATTAACTGCTAGGCCTGTTTTAAATTCCTTTTCAAATGGGGGGATA
CGTGACCATTAAGCTAAGGTCTGTTCAAACAGTAGTTATAAATAGGTGTA
TTGTCAAAGTTTAGGATCTTTCGCAAAACTGTATTAGAATTTAGTGTTTT
CTTGTTATTTTAAACCAGATATTCTTTGTTTTGTTTCGATGCATTTTATG
ATCATTTTATTGGACTTTATTGTTATTTCAGATATACAAACATGGAAAAT
TTAAATTCTAACAAAGAAGATGCACCTGTATAGAGATTCCTGCTGCTAAT
TTAGGGTTTGTATGTGACAGTTTCCTACTCAAATTTTTTTATTGTTGAGA
TATTTTCTCAGATTTTGATTTTCTTAGTAATTATTATCGTTTTTCTCATT
ATTGTTTCTTTTATTCTTTCTTTTTTCAGTTGTAACAATTCGATCCTTCA
GCCAATTCTGTTAAAATGAGTGTAATGTTTAGTCAAATTGATATCAGTCC
CCAGGTAAATCTCTTCTGTTTTTTTTTCAATTGTGTTTAGAATTCTTTAA
GGATAGAGCCTACAGAAAAATGATTGGTATTTATGACCAGTAGATGTTTT
TCATGAGAATAATGGAGTGTATACTGAGTTTAGAATTCTAAATCTGTCAT
TTGAGCTTTCCTAAGAATAATGGAGATTGAGCTCTTTTATATACATAATA
ACGGTGTTTGTCTTTTCATTGTTTTCGATCTATTTTCTAATCTACAAACG
ATTTGGTATTTTTGTTGAATTTACATTTTTAGGATGATGTAGAGACAGAG
ATGCAAAATGAAGACCTCAAGCAACAACAAGAGGTTTGTATTCAATAACA
ATACTAATCTTGTATTTTTAAAGAGTGAGTAGGTGTGCTATTTTCGGCCA
ACAGGTGCCTTGAAATAGACAGTGAAGTAGAACATGACAAACCCTAAAAG
AAAAGCCTATATAGTATTTAAGGTGGTTCCAGTTTTGGTTACAAAGGTCT
CTTTAATAGAGTTCTGATCTGTGATAACCACTCATAAACTGATGTATTTT
TTTCAAAATTTTGTAGGCTAAAACTCATGAAACTATGCAGCTATTCTTTT
AACTAAGAGCCTTTGGATATTCAAATCCCTTTCCATAATAGGAACCTTGA
GATAACGTTTCTTGCATTTGCACCTAAACAGAGCAAGACTTTAATCCTTA
GTTGCTTTTTGGACCTACCCCGGTGGGGTAAAGGTCCTATAAATTCACCT
CTGTCCGTCCGTCCGTTCGTTACCAGCTTTTCTCGAGATTGAATCATAGG
AATCATTTGATTTTTGGTACGAAGGTGCAAAACGGTGGTAGCCAAAATGT
GACGGAGCCCGATTTTCGAAAACAAATTTTTTTGGGCAAATTTGGGCCAA
AAAACGGCTAAAAAATGGGTTTTTTGGACTTTGTGAAAAATTAGATCATT
AAATTTTTTTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAG
ATGGCTCAAGCAGATTTTTGCAAAAAAATTTATTTGGCTTAAAAAACGCA
TGTTTATCTATAAGAATCGCTATTAATTAGCATACATCAATGTTCTTAGT
CAAATTACTCAATTTCTTTATGAGATAGAAGATTTTTTTGCTCATGAGGG
CTTACTTTTGAAGAATATGTGTGTTTAGACATGAAATTTTGGTTGCTTGG
CGTGTTTTTATAGAAAAACTGGCCAAGTTCAGTATTTTTTTATAAGCACA
TTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTTATTCT
TTAAGACTTTTTGCACAAAGATGCATAACTATAAACCTTCGAATGTGACG
GAGCCCAATTTTCGAAAAAGAAAATGTTTTTGGGCAAATTTGGGCCAAAA
AACGGCTAAAAAGCGGGTTTTTTGGACTTTGTGAAAAATTGGATCATTGA
TTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGAT
GGCTCAGGGAGATTTTTGCAAAAAGATTTGTTGGCTCAAAAAACGTATGT
TTGTCTATAAGAATCACTATTAATAAGCATACATTAATGTTCTTAGTCAA
ATTACTCAATTTTTTTATGAGATAGATGTTTTTTTTGCTCACGAGGGCTT
ACTTTTGAAGCATATGTGTGTTTAGACATGAAATTTTGGTTGCTTGGCGT
GTTTTTATAGAAAAACTGGCCAAATTGGATATTTTTTTATAAGCACATTA
TCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTCTCATTCTTTA
TGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGTGACTGAG
CCCGATTTTTGAAAAAAAATGTTTTTGGGCAAATTTGGGCCAAAAAAGGG
TTTTTTGGACTTTGTGAAATATTGGATCGTTGTTTTTTTCAAACTTTTCA
GCTCAAAAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCATACA
TCAATGTTCTTAGCCAAATTACTCAATTTTTTGATGAGATAGATGTCTTT
TTATGCTCACGAAGTCTTGAATATGAAAGAATATTTCAAGAGCATGAAAT
TTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAACGACTAATATTAATA
AATCGTCACTATTTGTGTTCTGAATAATTGTTTAACGTTCATGCTCACGT
AGATATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAA
GTATCACTTGTTATGTTTTTCAGTTGAAAGCTTTTCTTGAAGAAGAACTC
GATGATGGAGATCTCTTCGACAATGCCTCATTCACATCTACCGGACGATT
TAGTGATCCTCAGTACACAAAGACAGCACATTCAAAACAAAATAGTGGTC
GTCATAGCAACAGTGGTGATATTAGTTTCCATCAGAACTCAATACATAAT
GATTATGGAGATAATGAAGACTTTGGAGATCATTTGGGAATGCATAATGG
TTATCCATATAATGGCTACCAGGTAACTTTCTAGTTGAATTCATAGATAA
AAGATGAGAACAAGGTGGTTTAAACTTGTTAATTTTTGCATTAATTTTGG
TGGTTTTGAGTAATTATGATTGTTAGATGCCACCAAAGATACAGAATTAA
CCATTAGACCGAATAATACCCACACTCTAACTTCAAATTGTGCAACTGTT
AAAATAAGTGTCAATTTCGACTTTTTATTTGGGCCTTGTTAAAAAGCAGA
GAAGCACGGATCACAGTGCTACTAAGTCCAGACCTGTCGATACAGGACCG
AAAAGTATGGTGATCTCATATAAATATGATGCAAACTTCATTGATGGGTC
AAGAAGAAACTTTTAGAAAAACCTTGACCAAGTATTTTTATTTTATCATT
GTCTCATCTACCAAGTTAAACTCAACAGCTAAATAAAGATAGCTCGGAAA
ATTAGTTTTCTTCAACTCTCTGTTTTTCAGGATGGGAATCACAATAATAT
TGACCACTATCCAGCAGCAGCACATCCTTCAATAAGTAATGACCCATATC
CAAACACACAGCATGTCACGCAGCTTCAAACTCTTTACGAAGCACGTGGT
CGTAAAATTGAATCTTTGCAACGAGAGGTGGAGGAGAAAGATGAAAGTTA
CGCTAAAGAGATGCGTATTTTGAATCACAAGCTGATATTGGCTACTGGTA
TGTTCCTTGTTGAGCTCTTACTAAAATACCATTTGACCAAGAACATATAT
TATTTAGCAAACTTAATAAAGATCTGCAAAGATCGAAATATCGTTTTGAA
AGAAAATGTGTTTTCATGTTTTCACTTTGTTTCTACGATATATTTTAATT
CGATGCCTGATTTCAGTAAATAATCAATAAGTTATCTTGAATATTTCTTC
TGAGTTATTTGTTAAACGGGTTATACCAATCGTAAGTTGCAAGTCTGCAG
CGTTGCATGATTCATATCATAATAATATTTCTCATTCTTGACAGGCGACA
AAGAAGGTGCAATGACCAGCATGAAACAACTTCAAGATCTTTTACACGAA
CACAAAACTGATCTTCACAAAAACCAACAAGCCCTTGAAGAAGAAATGCA
AAATAACAGAGTGTTGACCAACCAAATAGACGAATTAAACGAAAAACTTT
TAGCCTCTGATGAAACCATCAACTCTTTACAACAACAGATACAAATGATG
AATCAGTCTGACTCATTAGCCCGTGCTCGTGCTCAACATGAAAGCCTCTT
AGCCACGATGAGACAAAAACACGAGGCTGAGATTCTATCATTGAAGGAAA
AACTGGATGACATGAAACAATCTCTAGCGTGGAAG

Coding sequence (CDS) from alignment at sc0000107_pilon:791344..796028-

>MSTRG.13503.4.p1 ID=MSTRG.13503.4.p1|Name=MSTRG.13503.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4485bp|location=Sequence derived from alignment at sc0000107_pilon:791344..796028- (Clytia hemisphaerica_ch_hm2_pilon)
GCGACAAAGAAGGTGCAATGACCAGCATGAAACAACTTCAAGATCTTTTA
CACGAACACAAAACTGATCTTCACAAAAACCAACAAGCCCTTGAAGAAGA
AATGCAAAATAACAGAGTGTTGACCAACCAAATAGACGAATTAAACGAAA
AACTTTTAGCCTCTGATGAAACCATCAACTCTTTACAACAACAGATACAA
ATGATGAATCAGTCTGACTCATTAGCCCGTGCTCGTGCTCAACATGAAAG
CCTCTTAGCCACGATGAGACAAAAACACGAGGCTGAGATTCTATCATTGA
AGGAAAAACTGGATGACATGAAACAATCTCTAGCGTGGAAGGATGGGAAT
CACAATAATATTGACCACTATCCAGCAGCAGCACATCCTTCAATAAGTAA
TGACCCATATCCAAACACACAGCATGTCACGCAGCTTCAAACTCTTTACG
AAGCACGTGGTCGTAAAATTGAATCTTTGCAACGAGAGGTGGAGGAGAAA
GATGAAAGTTACGCTAAAGAGATGCGTATTTTGAATCACAAGCTGATATT
GGCTACTGTTGAAAGCTTTTCTTGAAGAAGAACTCGATGATGGAGATCTC
TTCGACAATGCCTCATTCACATCTACCGGACGATTTAGTGATCCTCAGTA
CACAAAGACAGCACATTCAAAACAAAATAGTGGTCGTCATAGCAACAGTG
GTGATATTAGTTTCCATCAGAACTCAATACATAATGATTATGGAGATAAT
GAAGACTTTGGAGATCATTTGGGAATGCATAATGGTTATCCATATAATGG
CTACCAGGATGATGTAGAGACAGAGATGCAAAATGAAGACCTCAAGCAAC
AACAAGAGATGAGTGTAATGTTTAGTCAAATTGATATCAGTCCCCAGGCG
ACAAAGAAGGTGCAATGACCAGCATGAAACAACTTCAAGATCTTTTACAC
GAACACAAAACTGATCTTCACAAAAACCAACAAGCCCTTGAAGAAGAAAT
GCAAAATAACAGAGTGTTGACCAACCAAATAGACGAATTAAACGAAAAAC
TTTTAGCCTCTGATGAAACCATCAACTCTTTACAACAACAGATACAAATG
ATGAATCAGTCTGACTCATTAGCCCGTGCTCGTGCTCAACATGAAAGCCT
CTTAGCCACGATGAGACAAAAACACGAGGCTGAGATTCTATCATTGAAGG
AAAAACTGGATGACATGAAACAATCTCTAGCGTGGAAGGATGGGAATCAC
AATAATATTGACCACTATCCAGCAGCAGCACATCCTTCAATAAGTAATGA
CCCATATCCAAACACACAGCATGTCACGCAGCTTCAAACTCTTTACGAAG
CACGTGGTCGTAAAATTGAATCTTTGCAACGAGAGGTGGAGGAGAAAGAT
GAAAGTTACGCTAAAGAGATGCGTATTTTGAATCACAAGCTGATATTGGC
TACTGTTGAAAGCTTTTCTTGAAGAAGAACTCGATGATGGAGATCTCTTC
GACAATGCCTCATTCACATCTACCGGACGATTTAGTGATCCTCAGTACAC
AAAGACAGCACATTCAAAACAAAATAGTGGTCGTCATAGCAACAGTGGTG
ATATTAGTTTCCATCAGAACTCAATACATAATGATTATGGAGATAATGAA
GACTTTGGAGATCATTTGGGAATGCATAATGGTTATCCATATAATGGCTA
CCAGGATGATGTAGAGACAGAGATGCAAAATGAAGACCTCAAGCAACAAC
AAGAGATGAGTGTAATGTTTAGTCAAATTGATATCAGTCCCCAGGCGACA
AAGAAGGTGCAATGACCAGCATGAAACAACTTCAAGATCTTTTACACGAA
CACAAAACTGATCTTCACAAAAACCAACAAGCCCTTGAAGAAGAAATGCA
AAATAACAGAGTGTTGACCAACCAAATAGACGAATTAAACGAAAAACTTT
TAGCCTCTGATGAAACCATCAACTCTTTACAACAACAGATACAAATGATG
AATCAGTCTGACTCATTAGCCCGTGCTCGTGCTCAACATGAAAGCCTCTT
AGCCACGATGAGACAAAAACACGAGGCTGAGATTCTATCATTGAAGGAAA
AACTGGATGACATGAAACAATCTCTAGCGTGGAAGGATGGGAATCACAAT
AATATTGACCACTATCCAGCAGCAGCACATCCTTCAATAAGTAATGACCC
ATATCCAAACACACAGCATGTCACGCAGCTTCAAACTCTTTACGAAGCAC
GTGGTCGTAAAATTGAATCTTTGCAACGAGAGGTGGAGGAGAAAGATGAA
AGTTACGCTAAAGAGATGCGTATTTTGAATCACAAGCTGATATTGGCTAC
TGTTGAAAGCTTTTCTTGAAGAAGAACTCGATGATGGAGATCTCTTCGAC
AATGCCTCATTCACATCTACCGGACGATTTAGTGATCCTCAGTACACAAA
GACAGCACATTCAAAACAAAATAGTGGTCGTCATAGCAACAGTGGTGATA
TTAGTTTCCATCAGAACTCAATACATAATGATTATGGAGATAATGAAGAC
TTTGGAGATCATTTGGGAATGCATAATGGTTATCCATATAATGGCTACCA
GGATGATGTAGAGACAGAGATGCAAAATGAAGACCTCAAGCAACAACAAG
AGATGAGTGTAATGTTTAGTCAAATTGATATCAGTCCCCAGGCGACAAAG
AAGGTGCAATGACCAGCATGAAACAACTTCAAGATCTTTTACACGAACAC
AAAACTGATCTTCACAAAAACCAACAAGCCCTTGAAGAAGAAATGCAAAA
TAACAGAGTGTTGACCAACCAAATAGACGAATTAAACGAAAAACTTTTAG
CCTCTGATGAAACCATCAACTCTTTACAACAACAGATACAAATGATGAAT
CAGTCTGACTCATTAGCCCGTGCTCGTGCTCAACATGAAAGCCTCTTAGC
CACGATGAGACAAAAACACGAGGCTGAGATTCTATCATTGAAGGAAAAAC
TGGATGACATGAAACAATCTCTAGCGTGGAAGGATGGGAATCACAATAAT
ATTGACCACTATCCAGCAGCAGCACATCCTTCAATAAGTAATGACCCATA
TCCAAACACACAGCATGTCACGCAGCTTCAAACTCTTTACGAAGCACGTG
GTCGTAAAATTGAATCTTTGCAACGAGAGGTGGAGGAGAAAGATGAAAGT
TACGCTAAAGAGATGCGTATTTTGAATCACAAGCTGATATTGGCTACTGT
TGAAAGCTTTTCTTGAAGAAGAACTCGATGATGGAGATCTCTTCGACAAT
GCCTCATTCACATCTACCGGACGATTTAGTGATCCTCAGTACACAAAGAC
AGCACATTCAAAACAAAATAGTGGTCGTCATAGCAACAGTGGTGATATTA
GTTTCCATCAGAACTCAATACATAATGATTATGGAGATAATGAAGACTTT
GGAGATCATTTGGGAATGCATAATGGTTATCCATATAATGGCTACCAGGA
TGATGTAGAGACAGAGATGCAAAATGAAGACCTCAAGCAACAACAAGAGA
TGAGTGTAATGTTTAGTCAAATTGATATCAGTCCCCAGGCGACAAAGAAG
GTGCAATGACCAGCATGAAACAACTTCAAGATCTTTTACACGAACACAAA
ACTGATCTTCACAAAAACCAACAAGCCCTTGAAGAAGAAATGCAAAATAA
CAGAGTGTTGACCAACCAAATAGACGAATTAAACGAAAAACTTTTAGCCT
CTGATGAAACCATCAACTCTTTACAACAACAGATACAAATGATGAATCAG
TCTGACTCATTAGCCCGTGCTCGTGCTCAACATGAAAGCCTCTTAGCCAC
GATGAGACAAAAACACGAGGCTGAGATTCTATCATTGAAGGAAAAACTGG
ATGACATGAAACAATCTCTAGCGTGGAAGGATGGGAATCACAATAATATT
GACCACTATCCAGCAGCAGCACATCCTTCAATAAGTAATGACCCATATCC
AAACACACAGCATGTCACGCAGCTTCAAACTCTTTACGAAGCACGTGGTC
GTAAAATTGAATCTTTGCAACGAGAGGTGGAGGAGAAAGATGAAAGTTAC
GCTAAAGAGATGCGTATTTTGAATCACAAGCTGATATTGGCTACTGTTGA
AAGCTTTTCTTGAAGAAGAACTCGATGATGGAGATCTCTTCGACAATGCC
TCATTCACATCTACCGGACGATTTAGTGATCCTCAGTACACAAAGACAGC
ACATTCAAAACAAAATAGTGGTCGTCATAGCAACAGTGGTGATATTAGTT
TCCATCAGAACTCAATACATAATGATTATGGAGATAATGAAGACTTTGGA
GATCATTTGGGAATGCATAATGGTTATCCATATAATGGCTACCAGGATGA
TGTAGAGACAGAGATGCAAAATGAAGACCTCAAGCAACAACAAGAGATGA
GTGTAATGTTTAGTCAAATTGATATCAGTCCCCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13503MSTRG.13503Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13503.4.p1MSTRG.13503.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13503.4.p1.exon7MSTRG.13503.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13503.4.p1.exon6MSTRG.13503.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13503.4.p1.exon5MSTRG.13503.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13503.4.p1.exon4MSTRG.13503.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13503.4.p1.exon3MSTRG.13503.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13503.4.p1.exon2MSTRG.13503.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13503.4.p1.exon1MSTRG.13503.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107_pilongenomesc0000107_pilon:791344..796028 -