MSTRG.1349.1.p1 (mRNA) -

Overview
NameMSTRG.1349.1.p1
Unique NameMSTRG.1349.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:2261216..2262585+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1349.1.p1 ID=MSTRG.1349.1.p1|Name=MSTRG.1349.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1370bp|location=Sequence derived from alignment at sc0000006_pilon:2261216..2262585+ (Clytia hemisphaerica_ch_hm2_pilon)
GCAGAGCAACAACTATGAAACCAACAACGACAATGAAAATGACAACGAAA
ATGAGGACTACTATGAAAATGACCACTTCAACTACCACAACTCAAATGAT
GCAAGAAGGTTAGCCATTTTAAACTAACATATTATAGATCTTCTCGTGTT
CAAGAGGATCAACCCAATTGAGTTCTACCAAAATTGTTGACAACTCTTTG
GATATTTCGCTATTCTTAAGAGACCGATATTTGCCTAGTTTTTTGTACCC
CTTGATTTTTCAGATTATTTGGAGGTGTTCATCCCACGTACTTACGTAGA
ATTCCAACGTTTCCTTTGCCTGGAGTAGGATAGAATCCTTTTCCGGAACA
GCCTttgtttcttctttccaatCTGGATAGATCTTTCAGCCTTTAAAGGA
TGAAACtgatttaaactttttctttgccCTTATAGACTGTCCTATGTGTA
AATCAATTGAGAACTGCCGATGTTTGAGTTACAAGACACCTGGACGTTTA
CCGAGGAATCAAACACCAAAAATAGTGATGTTAACATTTGATGACAATGT
TAATGGTGTCAATAATATGTTATTCAAAGAGCTTTTGGATGGTCGATTGA
ATCCTAATAAATGCCCAATTACAACCACATTCTTCGTATCAGATATTGGA
ACAAATTATGCTATTGTTAAAAATCTTCACATGAAAGGTAACTCGAATTT
TCAAGATAGTGAGACATGGAAGATTTAACAATGGAAGTCTTGTTGATGCG
GTACACATTGTTCTATTAAcggttaaataaacgttgaaaacgTTTAAAAC
AAGAATCTTCAGCTGGTGTGTTAATACATCCAATAAGTCTGTAAAAATTA
CATCGTAAATGCGTTTTCACAGGTCAGATAGCCCAGACTCTTTGGCGTCG
AAATTCAAGGGTTGGGTTTTTGATCCCTGGTTACCGTTAACTCGGTAAAT
GAGTAGATTAGATTTGGTAATCTAATCTAGCCGGTAAGTTACTTGGAGCT
GGGAGTCCGTTTGGCACTCCACCTTAGCATTCAACAACCAAGGTTTTAGC
ACAAACAGAATAGGGGATTGACACCCAACTCCATCGATAGTCGCAACATG
AATAATCTTACTTACTTTTGTAGGACACGAGATGGCAGTGCACACAATAT
CTCATCGAACACCGTCCACATGGTGGAAAAATGCTGCCGAAGAAGAACTT
GTAGAAGAAATTGTCGGTATGAAGAAAAAACTCGAAAAAGCTGGAATTGA
CAACGTAGTTGGATATCGTAATCCCTTCTTGCAGACGGCTGGCGATCGAA
CGTTCAAGGTTCTGTATGAGAATGGCTTTTTATATGATTCAACTTTACCA
GCACATAATGGAAAACCATA

Coding sequence (CDS) from alignment at sc0000006_pilon:2261216..2262585+

>MSTRG.1349.1.p1 ID=MSTRG.1349.1.p1|Name=MSTRG.1349.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000006_pilon:2261216..2262585+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAGCAACAACTATGAAACCAACAACGACAATGAAAATGACAACGAAAAT
GAGGACTACTATGAAAATGACCACTTCAACTACCACAACTCAAATGATGC
AAGAAGACTGTCCTATGTGTAAATCAATTGAGAACTGCCGATGTTTGAGT
TACAAGACACCTGGACGTTTACCGAGGAATCAAACACCAAAAATAGTGAT
GTTAACATTTGATGACAATGTTAATGGTGTCAATAATATGTTATTCAAAG
AGCTTTTGGATGGTCGATTGAATCCTAATAAATGCCCAATTACAACCACA
TTCTTCGTATCAGATATTGGAACAAATTATGCTATTGTTAAAAATCTTCA
CATGAAAGGACACGAGATGGCAGTGCACACAATATCTCATCGAACACCGT
CCACATGGTGGAAAAATGCTGCCGAAGAAGAACTTGTAGAAGAAATTGTC
GGTATGAAGAAAAAACTCGAAAAAGCTGGAATTGACAACGTAGTTGGATA
TCGTAATCCCTTCTTGCAGACGGCTGGCGATCGAACGTTCAAGGTTCTGT
ATGAGAATGGCTTTTTATATGATTCAACTTTACCAGCACATAATGGAAAA
CCAAGAGCAACAACTATGAAACCAACAACGACAATGAAAATGACAACGAA
AATGAGGACTACTATGAAAATGACCACTTCAACTACCACAACTCAAATGA
TGCAAGAAGACTGTCCTATGTGTAAATCAATTGAGAACTGCCGATGTTTG
AGTTACAAGACACCTGGACGTTTACCGAGGAATCAAACACCAAAAATAGT
GATGTTAACATTTGATGACAATGTTAATGGTGTCAATAATATGTTATTCA
AAGAGCTTTTGGATGGTCGATTGAATCCTAATAAATGCCCAATTACAACC
ACATTCTTCGTATCAGATATTGGAACAAATTATGCTATTGTTAAAAATCT
TCACATGAAAGGACACGAGATGGCAGTGCACACAATATCTCATCGAACAC
CGTCCACATGGTGGAAAAATGCTGCCGAAGAAGAACTTGTAGAAGAAATT
GTCGGTATGAAGAAAAAACTCGAAAAAGCTGGAATTGACAACGTAGTTGG
ATATCGTAATCCCTTCTTGCAGACGGCTGGCGATCGAACGTTCAAGGTTC
TGTATGAGAATGGCTTTTTATATGATTCAACTTTACCAGCACATAATGGA
AAACCAAGAGCAACAACTATGAAACCAACAACGACAATGAAAATGACAAC
GAAAATGAGGACTACTATGAAAATGACCACTTCAACTACCACAACTCAAA
TGATGCAAGAAGACTGTCCTATGTGTAAATCAATTGAGAACTGCCGATGT
TTGAGTTACAAGACACCTGGACGTTTACCGAGGAATCAAACACCAAAAAT
AGTGATGTTAACATTTGATGACAATGTTAATGGTGTCAATAATATGTTAT
TCAAAGAGCTTTTGGATGGTCGATTGAATCCTAATAAATGCCCAATTACA
ACCACATTCTTCGTATCAGATATTGGAACAAATTATGCTATTGTTAAAAA
TCTTCACATGAAAGGACACGAGATGGCAGTGCACACAATATCTCATCGAA
CACCGTCCACATGGTGGAAAAATGCTGCCGAAGAAGAACTTGTAGAAGAA
ATTGTCGGTATGAAGAAAAAACTCGAAAAAGCTGGAATTGACAACGTAGT
TGGATATCGTAATCCCTTCTTGCAGACGGCTGGCGATCGAACGTTCAAGG
TTCTGTATGAGAATGGCTTTTTATATGATTCAACTTTACCAGCACATAAT
GGAAAACCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1349MSTRG.1349Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1349.1.p1.exon1MSTRG.1349.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1349.1.p1.exon2MSTRG.1349.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1349.1.p1.exon3MSTRG.1349.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1349.1.p1MSTRG.1349.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:2261216..2262585 +