MSTRG.13464.1.p1 (mRNA) -

Overview
NameMSTRG.13464.1.p1
Unique NameMSTRG.13464.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000107_pilon:267425..270609-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13464.1.p1 ID=MSTRG.13464.1.p1|Name=MSTRG.13464.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3185bp|location=Sequence derived from alignment at sc0000107_pilon:267425..270609- (Clytia hemisphaerica_ch_hm2_pilon)
TGCTGGAGCTTGAGGATAAGGAACGTGATATGGCGATAATGGGCTTTCTT
TTTACCCAAAAGCCAAAGACTGGTGACAAAATACAATTTTCTATCCGCGG
GGTACATGTTTGTCGTAAGACGTTTCTCTTTTTGTACACTGTTTCAAAGA
CACTTTATTCCGCTATCTGCAAACATTTTGATGAAAATGGTCCCACCCCA
CGCGTTCACGGAAATTCAAAGAGACTGCCTCATAACGTAATTGATCTGGT
TAGTACAGAGAGGGCCAGGAATTTCATAGAAAATTATGCGCTAGCGAACG
CTATCTCTCTCCCCGGCCGTGTACCAAATTACCGTGACAGTGACGCCATA
CTTCTTCTCATCCCGTCGTTCGAAACAAAAGAGAGTGTTTACAAACAGTA
CAAGGAATTGTGCATTGAGAACAATTTCGATTTTCTTGGACTAAGTTCGT
TTGGTCATTTATGGAAGACGCAGCTACCGAATATTCTTATCACAAAACCA
ATGGGTGATCTTTGCTGGGTGTGCCAACAAGGCAACGAGCGACTCTTGCG
GTCTCATTTGAATGACAATGAGGATAACGATGAAGAAGACCACGACAAAG
CCCAGGATGAGCAAACCACCCACATTATAGAAGCCACTCAAGAGGCTCGG
TATTATCGGGCTCAGGTATTATTTTATTTCTTGTAATGAGACGCAAGGGG
TCACTAGCAAGAGGGGAAACCATCCATATATCGCAGTGCGTGAAGGGGAA
ATGGGGTTAAGCCAAAGCGTCCGTCCATTGTTTGAATGACGTAATTTACT
TATGCTCTCTCTATTGCTTTACTATAGGAAAAAGAAAACGGTTGAAAAAG
AGGCCGATTCACGTTTAGTTTTCGTTTGAATTTTTCCAAAATAACCCCTA
GAATTCAAGACCAAATAGGACATAATGGCCTGTCATTCGACAAAACCACC
TTCAATAGTACTTTGAATACTTGATTTCTAAGGTTTTCATAAAAGCATTC
TTTAGAGAGAGGGAGGGGCGTTTTTTATCAAAAAAGTTCTAAAAATAGTT
TATGGAAATTTGTAAAATGAATTACAGTACCAATTTAAAAAAATTATAGT
TAGAGCACCCACAATCTAATACAAAACAGAACTGTTAATTTATCCTAATA
TGCAATAATTAAGTACGAAAAAAAATTTAAATTCAAATATTTCTTTCTCA
TCAAGGTGGAAGAAGCAAGAAGACAGGCAGCAAACTTTGAAGATGCCTTT
GAAAAACACGAACCTTGCTCATTCAAAGGCCTGGCCCATTACAGCTGGGA
TTATGCCCAGCAAACCCATTACCCATACAACCCACTTCAGCCGGGCCCGA
TTTTCTTCAAGACCCCAAGGAAATGTGGGATATTTGGGATATGCAATGAC
GGCATAAATCTGCAGTATAATTATCTTATTGATGAGATTTGTACAACAGG
CAAGGGTGCCAACGCTACCATCAGCTACCTTCATCACTTTTTAGAAACTT
ATGGGATGGGGGAAACTGATGCTTATTTGCATGCTGATAATTATTCAGGT
ATAAAAATGCGAATAAAATTCCAATTCCAATTATTTAGTTCTTTAGATTT
TCAAAATAATCAAGCTTCAAATACAATAAAGTTCGAAAAAGTTATTTAGA
TTTATTTGGCCTATTTTCCTTACTTTGAAAAATATTGAAATTGCTAAAAA
CTGAATCCAATAACATTTAACCTCATGAATCAATCCAAATTTTGATACCC
ATCAAAATTGATACCCATCAAAATAAATCCACTTCATGAGGCTATATTAA
TTTATTTAATTTTAGGGCAGAACAAAAACAATCCATTCCTTTGGTATCTG
ATGTGGCGTATTTTGAACGGTCTTCATGAGAAAATTGAATACAGCTTTAT
GATAGCTGGACACACCAAATTTAGCTGTGACAGGTATTTTCTTATTCTCA
TAAAAATATGAAAGATTTTGAACCTTAATTTTTCTTTTTTTTTTGACTTA
ATCCACAAATCTAGTTCTGCAGGCATATGGACGTTTCAAATGCAACAGTG
ACAAATTTCAGTTAAATATAAGGGAAGATTGAAATTGAAATTCATTTCAT
TAGATCTGTTATAAATTCAAACCCATAATTTGCAAAGTCTATGGGAAATA
ATACCTTTTAATTATATTCGTTTAAGAAAATGCGGCGATCTATTGAATAA
ATTACTCCAAGTTACTCCTCATACATTACTTTCACTCAGCCAGTACAAAT
GGATAACTTATTCTATCTCTAGGTAACAGCTGTGTTGTAAGAGACAAATC
AATGTGATGACGTTATCATTAAAAAAATTTCTGCTGGAGTAATCAGTTAT
TCAAAAGACTGCCGCATTCTCCTAAACAACTATTTCCATGAATTGACATT
CTCAAAATTTTAGCTATGACTTTAATTTGGCAAAAATCACAAAATTTGAA
AATTAAAACCGCTCATTTTATAACATTATCTATCATTTCATTTCAAGGTG
CTTTGGTAGCTTCAAAAAGAAATTACGTTCCACACGCGTTTCTTCAATTT
ATGAGATTGCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTGCTG
GTTGGTAACCACAATAAAGAGATGAATGTCCACACGTACGACTGGACTAC
CTATTTTGAAAAAGTTCTCAATTTCAAGACGATAAAGGACTTATTATCGT
ACCACCACTTTCGTATGTCAAAGGATGAACCTGGCATCGTCCACTGCTAT
GCATCCCTCGATGATGAACCAACCACCGTTTCCATTTTCAAGAAAAATAG
TACAACTAGCATTACACCAGTGTTGCCAAATATTGTTGAACCAAAAGGAT
TTACCAAACAACGCACTGATTATCTCCGAAAAGAAATTCGTCAATTCTGC
CGTCCTGGAACAGAGGATTTAGTTGCACCTTGATTGAAAGGATCTTCACG
CTTATTTTATATTCAGTTTGTAATTACGGTAGTGGCTAAAATTTTCTGGG
AGTTTTTGCAATTTATGAGTCAATTACAACAATTTCTAGCCATTTAAACT
TTTCACTGATTGTGTCCTCTTCACTGCAGCATTGATTGAACCAGTAAAAA
AAGAAGAATGATGGAATTTTTTATCTTCATATAATTTTGATTAGTGATAT
TGTATGGTTTATTTAGTGTTCTTTGTTTTGAGTCT

Coding sequence (CDS) from alignment at sc0000107_pilon:267425..270609-

>MSTRG.13464.1.p1 ID=MSTRG.13464.1.p1|Name=MSTRG.13464.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6240bp|location=Sequence derived from alignment at sc0000107_pilon:267425..270609- (Clytia hemisphaerica_ch_hm2_pilon)
GTGCTTTGGTAGCTTCAAAAAGAAATTACGTTCCACACGCGTTTCTTCAA
TTTATGAGATTGCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTG
CTGGTTGGTAACCACAATAAAGAGATGAATGTCCACACGTACGACTGGAC
TACCTATTTTGAAAAAGTTCTCAATTTCAAGACGATAAAGGACTTATTAT
CGTACCACCACTTTCGTATGTCAAAGGATGAACCTGGCATCGTCCACTGC
TATGCATCCCTCGATGATGAACCAACCACCGTTTCCATTTTCAAGAAAAA
TAGTACAACTAGCATTACACCAGTGTTGCCAAATATTGTTGAACCAAAAG
GATTTACCAAACAACGCACTGATTATCTCCGAAAAGAAATTCGTCAATTC
TGCCGTCCTGGAACAGAGGATTTAGTTGCACCTTGAGGCAGAACAAAAAC
AATCCATTCCTTTGGTATCTGATGTGGCGTATTTTGAACGGTCTTCATGA
GAAAATTGAATACAGCTTTATGATAGCTGGACACACCAAATTTAGCTGTG
ACAGGTGGAAGAAGCAAGAAGACAGGCAGCAAACTTTGAAGATGCCTTTG
AAAAACACGAACCTTGCTCATTCAAAGGCCTGGCCCATTACAGCTGGGAT
TATGCCCAGCAAACCCATTACCCATACAACCCACTTCAGCCGGGCCCGAT
TTTCTTCAAGACCCCAAGGAAATGTGGGATATTTGGGATATGCAATGACG
GCATAAATCTGCAGTATAATTATCTTATTGATGAGATTTGTACAACAGGC
AAGGGTGCCAACGCTACCATCAGCTACCTTCATCACTTTTTAGAAACTTA
TGGGATGGGGGAAACTGATGCTTATTTGCATGCTGATAATTATTCAGCTG
GAGCTTGAGGATAAGGAACGTGATATGGCGATAATGGGCTTTCTTTTTAC
CCAAAAGCCAAAGACTGGTGACAAAATACAATTTTCTATCCGCGGGGTAC
ATGTTTGTCGTAAGACGTTTCTCTTTTTGTACACTGTTTCAAAGACACTT
TATTCCGCTATCTGCAAACATTTTGATGAAAATGGTCCCACCCCACGCGT
TCACGGAAATTCAAAGAGACTGCCTCATAACGTAATTGATCTGGTTAGTA
CAGAGAGGGCCAGGAATTTCATAGAAAATTATGCGCTAGCGAACGCTATC
TCTCTCCCCGGCCGTGTACCAAATTACCGTGACAGTGACGCCATACTTCT
TCTCATCCCGTCGTTCGAAACAAAAGAGAGTGTTTACAAACAGTACAAGG
AATTGTGCATTGAGAACAATTTCGATTTTCTTGGACTAAGTTCGTTTGGT
CATTTATGGAAGACGCAGCTACCGAATATTCTTATCACAAAACCAATGGG
TGATCTTTGCTGGGTGTGCCAACAAGGCAACGAGCGACTCTTGCGGTCTC
ATTTGAATGACAATGAGGATAACGATGAAGAAGACCACGACAAAGCCCAG
GATGAGCAAACCACCCACATTATAGAAGCCACTCAAGAGGCTCGGTATTA
TCGGGCTCAGGTGCTTTGGTAGCTTCAAAAAGAAATTACGTTCCACACGC
GTTTCTTCAATTTATGAGATTGCCGATGTCTGTGACAAGTCAAAATGCAA
TTTCTCAGTGCTGGTTGGTAACCACAATAAAGAGATGAATGTCCACACGT
ACGACTGGACTACCTATTTTGAAAAAGTTCTCAATTTCAAGACGATAAAG
GACTTATTATCGTACCACCACTTTCGTATGTCAAAGGATGAACCTGGCAT
CGTCCACTGCTATGCATCCCTCGATGATGAACCAACCACCGTTTCCATTT
TCAAGAAAAATAGTACAACTAGCATTACACCAGTGTTGCCAAATATTGTT
GAACCAAAAGGATTTACCAAACAACGCACTGATTATCTCCGAAAAGAAAT
TCGTCAATTCTGCCGTCCTGGAACAGAGGATTTAGTTGCACCTTGAGGCA
GAACAAAAACAATCCATTCCTTTGGTATCTGATGTGGCGTATTTTGAACG
GTCTTCATGAGAAAATTGAATACAGCTTTATGATAGCTGGACACACCAAA
TTTAGCTGTGACAGGTGGAAGAAGCAAGAAGACAGGCAGCAAACTTTGAA
GATGCCTTTGAAAAACACGAACCTTGCTCATTCAAAGGCCTGGCCCATTA
CAGCTGGGATTATGCCCAGCAAACCCATTACCCATACAACCCACTTCAGC
CGGGCCCGATTTTCTTCAAGACCCCAAGGAAATGTGGGATATTTGGGATA
TGCAATGACGGCATAAATCTGCAGTATAATTATCTTATTGATGAGATTTG
TACAACAGGCAAGGGTGCCAACGCTACCATCAGCTACCTTCATCACTTTT
TAGAAACTTATGGGATGGGGGAAACTGATGCTTATTTGCATGCTGATAAT
TATTCAGCTGGAGCTTGAGGATAAGGAACGTGATATGGCGATAATGGGCT
TTCTTTTTACCCAAAAGCCAAAGACTGGTGACAAAATACAATTTTCTATC
CGCGGGGTACATGTTTGTCGTAAGACGTTTCTCTTTTTGTACACTGTTTC
AAAGACACTTTATTCCGCTATCTGCAAACATTTTGATGAAAATGGTCCCA
CCCCACGCGTTCACGGAAATTCAAAGAGACTGCCTCATAACGTAATTGAT
CTGGTTAGTACAGAGAGGGCCAGGAATTTCATAGAAAATTATGCGCTAGC
GAACGCTATCTCTCTCCCCGGCCGTGTACCAAATTACCGTGACAGTGACG
CCATACTTCTTCTCATCCCGTCGTTCGAAACAAAAGAGAGTGTTTACAAA
CAGTACAAGGAATTGTGCATTGAGAACAATTTCGATTTTCTTGGACTAAG
TTCGTTTGGTCATTTATGGAAGACGCAGCTACCGAATATTCTTATCACAA
AACCAATGGGTGATCTTTGCTGGGTGTGCCAACAAGGCAACGAGCGACTC
TTGCGGTCTCATTTGAATGACAATGAGGATAACGATGAAGAAGACCACGA
CAAAGCCCAGGATGAGCAAACCACCCACATTATAGAAGCCACTCAAGAGG
CTCGGTATTATCGGGCTCAGGTGCTTTGGTAGCTTCAAAAAGAAATTACG
TTCCACACGCGTTTCTTCAATTTATGAGATTGCCGATGTCTGTGACAAGT
CAAAATGCAATTTCTCAGTGCTGGTTGGTAACCACAATAAAGAGATGAAT
GTCCACACGTACGACTGGACTACCTATTTTGAAAAAGTTCTCAATTTCAA
GACGATAAAGGACTTATTATCGTACCACCACTTTCGTATGTCAAAGGATG
AACCTGGCATCGTCCACTGCTATGCATCCCTCGATGATGAACCAACCACC
GTTTCCATTTTCAAGAAAAATAGTACAACTAGCATTACACCAGTGTTGCC
AAATATTGTTGAACCAAAAGGATTTACCAAACAACGCACTGATTATCTCC
GAAAAGAAATTCGTCAATTCTGCCGTCCTGGAACAGAGGATTTAGTTGCA
CCTTGAGGCAGAACAAAAACAATCCATTCCTTTGGTATCTGATGTGGCGT
ATTTTGAACGGTCTTCATGAGAAAATTGAATACAGCTTTATGATAGCTGG
ACACACCAAATTTAGCTGTGACAGGTGGAAGAAGCAAGAAGACAGGCAGC
AAACTTTGAAGATGCCTTTGAAAAACACGAACCTTGCTCATTCAAAGGCC
TGGCCCATTACAGCTGGGATTATGCCCAGCAAACCCATTACCCATACAAC
CCACTTCAGCCGGGCCCGATTTTCTTCAAGACCCCAAGGAAATGTGGGAT
ATTTGGGATATGCAATGACGGCATAAATCTGCAGTATAATTATCTTATTG
ATGAGATTTGTACAACAGGCAAGGGTGCCAACGCTACCATCAGCTACCTT
CATCACTTTTTAGAAACTTATGGGATGGGGGAAACTGATGCTTATTTGCA
TGCTGATAATTATTCAGCTGGAGCTTGAGGATAAGGAACGTGATATGGCG
ATAATGGGCTTTCTTTTTACCCAAAAGCCAAAGACTGGTGACAAAATACA
ATTTTCTATCCGCGGGGTACATGTTTGTCGTAAGACGTTTCTCTTTTTGT
ACACTGTTTCAAAGACACTTTATTCCGCTATCTGCAAACATTTTGATGAA
AATGGTCCCACCCCACGCGTTCACGGAAATTCAAAGAGACTGCCTCATAA
CGTAATTGATCTGGTTAGTACAGAGAGGGCCAGGAATTTCATAGAAAATT
ATGCGCTAGCGAACGCTATCTCTCTCCCCGGCCGTGTACCAAATTACCGT
GACAGTGACGCCATACTTCTTCTCATCCCGTCGTTCGAAACAAAAGAGAG
TGTTTACAAACAGTACAAGGAATTGTGCATTGAGAACAATTTCGATTTTC
TTGGACTAAGTTCGTTTGGTCATTTATGGAAGACGCAGCTACCGAATATT
CTTATCACAAAACCAATGGGTGATCTTTGCTGGGTGTGCCAACAAGGCAA
CGAGCGACTCTTGCGGTCTCATTTGAATGACAATGAGGATAACGATGAAG
AAGACCACGACAAAGCCCAGGATGAGCAAACCACCCACATTATAGAAGCC
ACTCAAGAGGCTCGGTATTATCGGGCTCAGGTGCTTTGGTAGCTTCAAAA
AGAAATTACGTTCCACACGCGTTTCTTCAATTTATGAGATTGCCGATGTC
TGTGACAAGTCAAAATGCAATTTCTCAGTGCTGGTTGGTAACCACAATAA
AGAGATGAATGTCCACACGTACGACTGGACTACCTATTTTGAAAAAGTTC
TCAATTTCAAGACGATAAAGGACTTATTATCGTACCACCACTTTCGTATG
TCAAAGGATGAACCTGGCATCGTCCACTGCTATGCATCCCTCGATGATGA
ACCAACCACCGTTTCCATTTTCAAGAAAAATAGTACAACTAGCATTACAC
CAGTGTTGCCAAATATTGTTGAACCAAAAGGATTTACCAAACAACGCACT
GATTATCTCCGAAAAGAAATTCGTCAATTCTGCCGTCCTGGAACAGAGGA
TTTAGTTGCACCTTGAGGCAGAACAAAAACAATCCATTCCTTTGGTATCT
GATGTGGCGTATTTTGAACGGTCTTCATGAGAAAATTGAATACAGCTTTA
TGATAGCTGGACACACCAAATTTAGCTGTGACAGGTGGAAGAAGCAAGAA
GACAGGCAGCAAACTTTGAAGATGCCTTTGAAAAACACGAACCTTGCTCA
TTCAAAGGCCTGGCCCATTACAGCTGGGATTATGCCCAGCAAACCCATTA
CCCATACAACCCACTTCAGCCGGGCCCGATTTTCTTCAAGACCCCAAGGA
AATGTGGGATATTTGGGATATGCAATGACGGCATAAATCTGCAGTATAAT
TATCTTATTGATGAGATTTGTACAACAGGCAAGGGTGCCAACGCTACCAT
CAGCTACCTTCATCACTTTTTAGAAACTTATGGGATGGGGGAAACTGATG
CTTATTTGCATGCTGATAATTATTCAGCTGGAGCTTGAGGATAAGGAACG
TGATATGGCGATAATGGGCTTTCTTTTTACCCAAAAGCCAAAGACTGGTG
ACAAAATACAATTTTCTATCCGCGGGGTACATGTTTGTCGTAAGACGTTT
CTCTTTTTGTACACTGTTTCAAAGACACTTTATTCCGCTATCTGCAAACA
TTTTGATGAAAATGGTCCCACCCCACGCGTTCACGGAAATTCAAAGAGAC
TGCCTCATAACGTAATTGATCTGGTTAGTACAGAGAGGGCCAGGAATTTC
ATAGAAAATTATGCGCTAGCGAACGCTATCTCTCTCCCCGGCCGTGTACC
AAATTACCGTGACAGTGACGCCATACTTCTTCTCATCCCGTCGTTCGAAA
CAAAAGAGAGTGTTTACAAACAGTACAAGGAATTGTGCATTGAGAACAAT
TTCGATTTTCTTGGACTAAGTTCGTTTGGTCATTTATGGAAGACGCAGCT
ACCGAATATTCTTATCACAAAACCAATGGGTGATCTTTGCTGGGTGTGCC
AACAAGGCAACGAGCGACTCTTGCGGTCTCATTTGAATGACAATGAGGAT
AACGATGAAGAAGACCACGACAAAGCCCAGGATGAGCAAACCACCCACAT
TATAGAAGCCACTCAAGAGGCTCGGTATTATCGGGCTCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13464MSTRG.13464Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13464.1.p1MSTRG.13464.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13464.1.p1.exon4MSTRG.13464.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13464.1.p1.exon3MSTRG.13464.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13464.1.p1.exon2MSTRG.13464.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13464.1.p1.exon1MSTRG.13464.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107_pilongenomesc0000107_pilon:267425..270609 -