|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000107_pilon:126556..132919+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13456.1.p1 ID=MSTRG.13456.1.p1|Name=MSTRG.13456.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6364bp|location=Sequence derived from alignment at sc0000107_pilon:126556..132919+ (Clytia hemisphaerica_ch_hm2_pilon)
GCTAAGGATTTTTACATATTGCTATTAAGAGATGTTACGTTTGCATAGAG
ACTTATTATTATATTGACTGATTGCTTTTTATTGATGCGAAAAAGTCATT
TCATACAACTACATAAACATCattgatatcaaaacaaaacaaggtTTTTA
AGTTTAAGCGATTACAGATTCCAATAGAAGTATTTGTTATTTTACACGAG
TTTCTCATTTGTGCGTCTTTCTATCAGAAACTTAAAATGGATTTTGCACA
TCGCGATGAACGCAACTTGACACATAGTGCTACTGGTAGAAATATCACCA
ACAAAGCTGACAGTGTagaaatctcaaaacttaaagaAGATTATGAGAAG
CAGATTCGAAaattgacatttgaaaatcGTATCAAAACCCTGGAGCTGGA
GAAAGAAATGACCAAACAGGATAATGAGCAGAAGATGAAGATTTTGCAGC
TTGAAAAGGACAATCAATCGTTAATACATGAACTTGAGCTTGTCAAGTTG
AAGACCGCCCATGAGATGGAGGCTAAGGGCGGTGTGGTTGATCGCGAAAT
GGAGAAAGAAATGCTGGAACAGCAGAAAGAGTTTCAGAACAAACTGGCTG
AGAAAGACAAGGAGATTGCTGCCAAGGAAAACGAGTTCAATCTTAAAATG
AAGGACTTAGAGATTTCAAAAGACAAGGAGATTGCTGCCAAGgaaaacga
acgcaaaacaaaaatcaatgaaatggaaaaagtaactctggcaaaaGAGC
ACGAGTACCAAACCAAACTTGCTGCCaaagaaaacgaattcaatTTGAAA
GTCAAGGATTTGGAGAAAGAAAAGGAGTTAGAGATTCAAGCGCTGCGTCA
Cgaaaatgaaataatgaaatcgaaaaagaaatccacaaatgagaacgcaa
ctgaagaaaagaagGGACAAGTGATTACGAGAAATGCGCAACAAAATCAT
CTGGAACCGAAAATGCAAAGCCTTGTCGACGGTattgttaactttttttc
tGGTCAGCCTCTTCCTTCTGCTTCTTACAAAAATTGGTATGAAGATATTT
CAAGGTCTTTGGTCAATAAAAAACCAGAATTCGTTTTACATGGATCATCG
AGTTGTTATTTCGTTAAGAAAGAGATGTGTCAAATACATAATTGTTTGTA
TCTCGCAACTAAGAGAAAGAACGAGAGTCGTGGGGAAGGTGTAAATGTTC
TAGATCTTGTTGTTCCGAATAAACAACAATTGAAGAAtgcaaaagtgttt
ttattACATCCAGTTAACCGGAAAATGTGTATTGAGCATGGTAAAATGTA
CACTAATGATAACCACGAGATGTGGGAATTTCTAAATGTTAACAATACCT
ACTTCGGAGAGAAACTATCAATTATAATGTTGCTTAAGTTTGAAATGACC
AAATAAAGTTTTTGCCTTGTATGGTATAAAGCAAActgacaatttgaaat
tttgatgaaaatgtcGAATAAACAGAGAGTAAAACATTATGAAGTTTTAA
CCAGAAaactttcatcaatttttgtatctttaagaatttcatattaattt
tttaattttattttattattcagatcaaaattcgtaatattttaacattG
ACAAAAGATACCGGGTGTGTTTTAAAAAACGCccctatttttcaattttt
gtcgtTCATTTTTCTATCAAACAAAAACATACGTAATTTTTAATGaagtt
tgaaattcaatttcctATCCCCTgtaaaaattatacatttatattttcat
tgaagATGGCTTTATGACTATTTCGCTAACTTACTTTCAATCTTTCATTG
TTCACAGATTTTGGTAACAAAATTTCCGTGTATGGAATGAAAAACGAAAG
TACATCGCGCTTTCATCTTCATATCTTACAacttttaaaacatcaaaatg
gcattattgttttcattttttcaagttaAGTTTTGTTCTAGAGTCATAAT
TTGATAGATTTTAGCTTGTTAAAAAGACACTTTAAATTGTCAACGATGCT
TAAAAGAGGACTGGAAAATCTTAGCATTTTCAGTTCAAGTGTTTTCCCAG
AAAAGTTAAGAAGCAGTAGAGCTTTTAGGGTATATCCCGGGTAGGTTAGA
ATTTGtgatatgaaaaaataaagaaaattaaattaaacgaaaaagaggaa
atttaattttgcttaaaaGTGCTACACATTTTCTTGAACACCTTGAAAAG
TCTTaggtatattttttattgttatattccaagtacacgtttttttttat
aaggaaccttaactttgctctgagcttggagttccttatttttacagaga
atttcagtctcaaagttccttatcgagttccttactacataggaaatttt
gaactttttgccccttgaaagatcaaaatttggtcaaattagtcccgata
aggtacattattttcaaatccacttattctcagcctgagcagttccttaa
caattccttattttttgaaccattttcagcctcgagttccttataaacgt
gttccttataaaaaaaaaaaacgtgtccTTAACTTTATGCTTGAATTCCC
TTTCTTTGGCAGCAATATTTGGCTTGTCATATCAAGGAGCTTAGTTTGGT
GCTTATGCCCTTTGGCCAGAGTTGCTTTCTccatttcaataatttttgtt
ttgcgtTCATTTTCCTTGGCAGCAATTTTCTTGTCTTTTGCAATCTccaa
ttctttcattttaagaTATGACTCGTTTTCCTTAGCAGTCatctcttttt
ctttctcagcCAGTTTCTTGTCCTTTTTCAGCCATTATTTGTCTTTCTCA
aaccagtttgttttgaaactcGTTTTGTTGTTTCAGCAAGTCTTTTTTCG
CTCCGTTACCCATATCTTTGTCAGCCTCATGAGCGGTCTTGAACTTCACC
AGCTCAAGTTCATGACTCAACAATTGATTGTCTTTTTCAAGCTGCAAAAT
TTTCATCGATTCTAATGATATAACGGCATCATGACCGCATAATTAGATTA
AAAGCTAAAGTGTACGAAAATAACAAATCAAATCTGTCTTTGATGAATTT
CGatcaaattttttagaaataacttggtatcattgtgatgagaatttttc
agactacaagttagtgtaaaatttgttactggatactgaaagtttaaaaa
gtaatggatcaaaaacgaaaaacctAAAACCACTTTTATAAACACAGCAT
ATACAAACCAGCCCTCTTCGCATGGTGAGCCGTTTCTGAGCTTTTTGTAA
CGACCAAATTAAAGCTAAAGCAAAGGAGTTTTCAATAGACATGATCAGAA
CACTTCGGGTAATCAGAGAAGCACTTTTTCTATTCCATCCCAtttttttG
ATTATACCTTTTTGTCAAGCAGCCATATATAACTCGTTCAACAAAATGTT
TTCAGACACACTTATGTTGTgtcttaaaaaacattttctaaaaactaCGA
AGCGCAAAGAGAAAGAGTGACTACTCGTAGTTCTcgggattctttttctt
tttatctatTTATCTAATGAGGTGCAAGCCCATATgcaatactcttaggt
tccaaataaacgccccttccctgcttgttaatttttcgaaaattttacaa
cccccccccccccggaccttattaggaccccccccccgtttattattttt
ttaatttttttcaactttcaaagacaaggtcccttattctgctctaaata
gcctgattttagcctatatttatcttatttttgggATTTCGTAATTACAA
TTTCCATCCCCCCTGCAGTTAggccccctgtttatttggaacctaagagt
aattatATAATCTATAACCGAGGTCACTTTAAAAGTTTGATCGGAACCTT
ATTTTGTCTTCTCATTATTATTTGAGTACAAATATATCAATTTAGAGCTG
TAGAAGCGGgtcaaaatcattttgaatACTAAAAGGACACAAATCGTGTT
TCTAAGTTTTCCTCCTCATACTATACTTCTTTACAGCTACCTGTTTGAAA
TAAACGCCCTTTTGCTCGAAGGGGTTTTTGATCGTAATACGGTACACAAA
TTCTAAAGGTTGAAGCAAAAATAGTCATTTTGCCACCGGACTATTTATGT
AAGAACTTCAGACTGAAATtcgggaaaataagaacattagtAAGAAGAAG
ACCACCCTtatttgaactttttaaaataGTTTCCTTTCTATTAATTCTCT
TAAATCTATCTGGCAGTAACCTTTTTACTTCCCAACTTTAAATTAGAGCA
GAAAAGTTGACTTGTGCACCAATTTTTATACATTTAAatgaattaatttc
aaaaaacccCATTGAAGgttcaaatttatcaaaatatccaGGCTAAGCCC
AAATCACGacgttttaataaaaaaaccaTAGAAGAGTAGACTAGAAGAGT
AATTGGAtactttttgttgatttttgcttttgattGATACACGAAAAGTC
ATTTCATGCAACTTCATATTTACACCATTTAAACAAACATACTTTGAGCG
AATTTGATACGaaagcaaaacaaattttcGAGGTTGAAGTAAATACACAT
TCTAAAAGAAGTACTTTTTTCTACTGTTAATCTTATTAGAGTATCTCATT
TGTGCGtctttttatcaaaaacttaaaatggatTCTGCACATCGCGATGA
ACGCAACTTGGCACACAGTGCTGCTGGTAGAAATGTCACCAACAAAGCTG
ACAGTGTAGAAATTGCAAAACTCAAAGAAGATTATGAAAAACAGattcaa
aaattgacatttgaaaatcGTATCAAAACCCTGGAGCTGGAGAATGAAAT
GACCAAACAGGACAAAGAGCAGAAGATGAAGATTTTGCAGCTTGAAAAGG
ACAATCAATCGTTAACACATGAACTGGAGCTGGTCAAGTTGAAGACCGCC
CATGAGATGGAGGCTAAGGGCGGTGTGGTTGATCGCGAAATGGAGAAAGA
AATGCTGAAACAGCAGAAAGAGTTTCAGAATAAACTGGCTGAGAAAGACA
AAAAGATGGCTGCCAGGGAAaacgaatttcaaaacaaactggccGATAAA
GACAAGGAGCTGGTCGCAAAAGACAAGGAGATTGCTGCCAAGGAAAACGA
GTGCAAAacgaaaatcaatgaaaagGAGAAAGCAACTCTGGCAAAAGAGC
ACGAGTACCAAACAAAGGTTGCTGAAATGAGGAACCAAATTGCTGCTAAA
GAAAATGAGTTCAAACTTAAAGTCAAGGATTTGGAGAAAGAAAAGGAGTT
AGAGATTCAAGCGCTGCGTCACgaaaatgaaataatgaaatcgaaaaaga
aatccacaaatgagaacgcaactgaagaaaagaagGGACAAGCGATTACG
AGAAATGCGCAACAAAATCATCTGGAACCGAAAATGCAAAGCCTTGTCGA
CGGTattgttaactttttttctGGTCAGCCTCATCCTTTTACTTCTTACA
AAAATTGGTTTGAAGATATTGCAAGGTCTCTGGTCAACAAAAGACCAGAA
CTCGTTTTACATGGATCATCGAGTTATTATTTCGTTAAGAAAGAGATGTC
TCGAATGCATAATCTTTTGTTTCTCGCAACTAAGAGAAAGAACGAGAGTC
GTGGGGAAGATGCACATATTCTAGATCTTGTTGTTCCGAATAAACAACAA
TTGAAGAAtgcaaaagtgtttttattACATCCAGCTGATCGGGGAATGTG
TATTGAGCATGGTAAAATGTACACTCGTGATAATTACGAGGTGTGGGAAT
TTAAAAACGTTACCAATGCCTACTACTTCGGAGAGAAACGATCAATCATA
ATGTTACTTAAGTTTGAAATGACCAAATAAAGTTTTGGCCTTGTATGGTA
TATAAGCAAACggacaatttgaaattttgatgacaatGTCGAATAACAGA
GAGTAAAATATTATGAAGTTTTATCCAGAAAACTACCATCAATTTTTGTA
TCTTTAAGAATGttatattaatttttcattttatctcgctattattcatt
ttatctcgctattattcattttatctcgctattattcattttatctcgct
attattcattttatctcgctattattcattttatcttgctattattcatt
ttatctcgctattattcattttatctcgctattattcaGATCAAAACTCG
TAATATGTTAACATTGACAAAAGATATTTTAGCATGATATTTTTAAACTC
CTGGTAATTAAGAAGACACAATTTGAAAGTTTTCCTACCCTCCTTTATAA
GGCATGAAATACCGTAAAGagaattgtgtttttctatCTTTCCTTATTTC
CTCTCGTACAGAGGACGAGTTGATTCgtaaaatgtttgtttgtcgaaaaa
gaaaaaataccaaa Coding sequence (CDS) from alignment at sc0000107_pilon:126556..132919+ >MSTRG.13456.1.p1 ID=MSTRG.13456.1.p1|Name=MSTRG.13456.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2346bp|location=Sequence derived from alignment at sc0000107_pilon:126556..132919+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTTTGCACATCGCGATGAACGCAACTTGACACATAGTGCTACTGG
TAGAAATATCACCAACAAAGCTGACAGTGTagaaatctcaaaacttaaag
aAGATTATGAGAAGCAGATTCGAAaattgacatttgaaaatcGTATCAAA
ACCCTGGAGCTGGAGAAAGAAATGACCAAACAGGATAATGAGCAGAAGAT
GAAGATTTTGCAGCTTGAAAAGGACAATCAATCGTTAATACATGAACTTG
AGCTTGTCAAGTTGAAGACCGCCCATGAGATGGAGGCTAAGGGCGGTGTG
GTTGATCGCGAAATGGAGAAAGAAATGCTGGAACAGCAGAAAGAGTTTCA
GAACAAACTGGCTGAGAAAGACAAGGAGATTGCTGCCAAGGAAAACGAGT
TCAATCTTAAAATGAAGGACTTAGAGATTTCAAAAGACAAGGAGATTGCT
GCCAAGgaaaacgaacgcaaaacaaaaatcaatgaaatggaaaaagtaac
tctggcaaaaGAGCACGAGTACCAAACCAAACTTGCTGCCaaagaaaacg
aattcaatTTGAAAGTCAAGGATTTGGAGAAAGAAAAGGAGTTAGAGATT
CAAGCGCTGCGTCACgaaaatgaaataatgaaatcgaaaaagaaatccac
aaatgagaacgcaactgaagaaaagaagGGACAAGTGATTACGAGAAATG
CGCAACAAAATCATCTGGAACCGAAAATGCAAAGCCTTGTCGACGGTatt
gttaactttttttctGGTCAGCCTCTTCCTTCTGCTTCTTACAAAAATTG
GTATGAAGATATTTCAAGGTCTTTGGTCAATAAAAAACCAGAATTCGTTT
TACATGGATCATCGAGTTGTTATTTCGTTAAGAAAGAGATGTGTCAAATA
CATAATTGTTTGTATCTCGCAACTAAGAGAAAGAACGAGAGTCGTGGGGA
AGATGCACATATTCTAGATCTTGTTGTTCCGAATAAACAACAATTGAAGA
AtgcaaaagtgtttttattACATCCAGCTGATCGGGGAATGTGTATTGAG
CATGGTAAAATGTACACTCGTGATAATTACGAGGTGTGGGAATTTAAAAA
CGTTACCAATGCCTACTACTTCGGAGAGAAACGATCAATCATAATGTTAC
TTAAGTTTGAAATGACCAAATAAATGGATTTTGCACATCGCGATGAACGC
AACTTGACACATAGTGCTACTGGTAGAAATATCACCAACAAAGCTGACAG
TGTagaaatctcaaaacttaaagaAGATTATGAGAAGCAGATTCGAAaat
tgacatttgaaaatcGTATCAAAACCCTGGAGCTGGAGAAAGAAATGACC
AAACAGGATAATGAGCAGAAGATGAAGATTTTGCAGCTTGAAAAGGACAA
TCAATCGTTAATACATGAACTTGAGCTTGTCAAGTTGAAGACCGCCCATG
AGATGGAGGCTAAGGGCGGTGTGGTTGATCGCGAAATGGAGAAAGAAATG
CTGGAACAGCAGAAAGAGTTTCAGAACAAACTGGCTGAGAAAGACAAGGA
GATTGCTGCCAAGGAAAACGAGTTCAATCTTAAAATGAAGGACTTAGAGA
TTTCAAAAGACAAGGAGATTGCTGCCAAGgaaaacgaacgcaaaacaaaa
atcaatgaaatggaaaaagtaactctggcaaaaGAGCACGAGTACCAAAC
CAAACTTGCTGCCaaagaaaacgaattcaatTTGAAAGTCAAGGATTTGG
AGAAAGAAAAGGAGTTAGAGATTCAAGCGCTGCGTCACgaaaatgaaata
atgaaatcgaaaaagaaatccacaaatgagaacgcaactgaagaaaagaa
gGGACAAGTGATTACGAGAAATGCGCAACAAAATCATCTGGAACCGAAAA
TGCAAAGCCTTGTCGACGGTattgttaactttttttctGGTCAGCCTCTT
CCTTCTGCTTCTTACAAAAATTGGTATGAAGATATTTCAAGGTCTTTGGT
CAATAAAAAACCAGAATTCGTTTTACATGGATCATCGAGTTGTTATTTCG
TTAAGAAAGAGATGTGTCAAATACATAATTGTTTGTATCTCGCAACTAAG
AGAAAGAACGAGAGTCGTGGGGAAGATGCACATATTCTAGATCTTGTTGT
TCCGAATAAACAACAATTGAAGAAtgcaaaagtgtttttattACATCCAG
CTGATCGGGGAATGTGTATTGAGCATGGTAAAATGTACACTCGTGATAAT
TACGAGGTGTGGGAATTTAAAAACGTTACCAATGCCTACTACTTCGGAGA
GAAACGATCAATCATAATGTTACTTAAGTTTGAAATGACCAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107_pilon | genome | sc0000107_pilon:126556..132919 + |
|
