MSTRG.13444.1.p1 (mRNA) -

Overview
NameMSTRG.13444.1.p1
Unique NameMSTRG.13444.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000106_pilon:1124698..1130154-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13444.1.p1 ID=MSTRG.13444.1.p1|Name=MSTRG.13444.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5457bp|location=Sequence derived from alignment at sc0000106_pilon:1124698..1130154- (Clytia hemisphaerica_ch_hm2_pilon)
TTGAGACGCGATCGATCTTTTTACTAGGAAATCCCGCTTCGAAGCGACTT
CTTGAAGTATGTTTATATTTTTCAGCTACAAATATCCAATTGATCACTTG
TCTTCAAGTATTGCAGATTGATCGATTTATCTGCAGAGAGCTTTTACCCC
TTCGATTAATGGAAATTTACACAACTGACCGAACCTTACACTCAGAATAA
CGCCAGATATTCCCTTAATTTTTCAGGATGATCATCACAAAGAAGAACCG
TGTCGCCATTTACGAAGCTCTTTTTAGAGATGGAGTTATGGTTTGTATCA
AAGATGGTAACAAACCAAGTCACAATGAATTGACTTCCATCAGAAATGTC
CAAGTTATGATGGCTATGAAGGTAAATTTCACAGATTGGCTGGAAGATAA
TAAGCGTCTACTACATTATCTTGATATTTATCAAGAAGAAGAAGTTGCAA
AGATGTGTCATTATTTTGGTTTGATAAACAACATGGTTCTTTTTTTTTAT
GGATGGGAGTGAGACAACATATACAATAATGGATTTTAATTCTATACTTG
AAAAACATAATCCCTGGATGGATTGAAATTTTAAAAAGATGTTAGCCAAA
TACATGAAAAGGAAATCTTTTCTCAAGTAGTACAACAGAAGTACAAGGCA
GATGGAATGAAATCACATGCTTGAGAGTCGTTCACAATTTGATTTTTCTC
ACAAAGCCTCATTTTGTTAGGCTGATGTTTGTAAAAATTAGTTTGGTTCC
CATCACCTGACCAACCCTAATTTTTAATCAGAAATAGCAGTTGAAGGGTC
AGGAAGCTGGTTTGCTGCTGGGCTAGAATTCTTTTGTGACCCTCTGATCA
CGGGAACTGAAATAAATTCGAACAGCTATTTCTCGATTATTTTTACCTGC
TTTTATTTTTTGGACCGAATGGAAATCAAGACAAAGATGTCGTGTGAAGA
CAAGCCACGTTATCATGCCTGGTATTTGTACAACAGAATTTTTTTACCAC
CAACTGACTGACCCACTTTTTCAAAGTTCAATGATGGGAACCAAACAATT
TTTTTACAGAACGGCCTTGGAAGTTTGATTCTCAGTGCTGAGTCAAAAGC
AGTTTCTGAATGTGACCTCACATGTGTGAAAAATGTGTTTTAATCCAGTT
TATTTTTTCGGTTCAAAAATGTTATCTAATTTTGTCACACTTACTAACAT
GCACAAACGATTACCTGTCTAGTATCAGACAGGACGGGTACGAGCTGTGA
GGTAGATAAATTTACAGTTGGAAATTCCAAGTTGGCGCTGTCCTCATCTA
CTAAATTAAAAACCAAATTTCAGAACGTGCATTTTCTCTATGAAAGTCAG
GCCATATTTTAGAAAGGCAGGGCAGCGTCCGTTGGTGGTAAAAAAGGGCA
CTTTTTCTCGTGTTTCTCCACTAAAAAGGCTGTTTTTACCAAAATTTTAG
TGATTTCAGGAGGGGCAGCGTCTGATAACCGGGCATGAAAAACAGCCTGA
AAGTGTTACCAGTAAAAGAATAACAGAATTTGATTAACTGTGTTTTCAAC
AGTCATAAGGATCTGGGAGATTCAAACTCTCAACCCTAACCATCTACCGT
GAAGTCGGGTAGCTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAAT
GACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATTAACTACGCAGCT
TCGCTCGCAGCTCTACTCTGCCATTTTTGTTTTTATTTAACTTTGTATTT
TAAGGACCAGACAGGTCATTCATTTGATGGCTATGCATGTTAGCCTCCAC
TGATGCAAGTTACCTGACTTCACGGCATATATTTCGCCATCAGTATATAG
AATAAGAAAGCATGGATCTCCAGGTTAGGCTAGCAGTGCACATGCATGAG
CAATTCTGAAATATTGCTAAATCAGCATTGTTGAACCTTTCTAAGGTTCA
ATTAATTCAATTGGTCAAGTATAGATAAGAAGAGCAGACTTATTTTCTTT
TTCCACTTTTTAGTCATTGAAATCTCGTGGTTATGTCAGAGAAAACTTTG
CATGGAGACATGGTTATTATTACTTGACAAACGAGGGTATTCAATACTTA
AGAGACTTCCTCCACCTCCCACCTGAAATTGTCCCAGCAACTTTGAAGAA
AACTACCAGCAAGAGTGATACACCAAAACCATCATGGAAAGGTATACTTA
TGTTAATTTGTATATGCCTGAAAAATTAGAAATAGTTACTGTTCTCAACG
AATAGGTATTTTGCTATAATTTATTCAATATAAACCTTAACCCTGTAAAT
TACAAATGTCCAGAATTATTTTATATAGCTAACCATTCCTTAAATCACCA
AACAAGACATTTTGTCTTCAATCAAATTTCAAGAGTATTTTCAGGAGCTT
ATGCTTATATAACAATCTGACTGTTATCTCTAGACAGAGAGAACCGATCT
GGACCACGAGGAGGAGATGACCGTGACCGTGATTCTTACAGACGTGATGG
TGGAGACAAAGGAGGAGCTGGATCAGACTTCAAGCCAGAATTCGTAAGTA
ATTCTAGTAATATCTAATCAGAATTTTAGTTGACATGAGTCCAGGTTTGC
CTTACGGTGATCCAGGGGGGGGGTCAGTACTAAAATGTAAGACATACATG
AGTACTAAAAGGATTTTCGCTAATTTTTGACATACCCCCACCTATTTTTC
GAAAATGTTATTTTAGTACACATGTACTAAAATTATTTTGAGCAATTTAA
CATAGATACCACCCATTTTTTGCCCTTTTAGGCAAGTACTTTTTTATTTT
CTGGTTTACGGACATTGTTGGAGATGATCTTTTGGAGCGGAGGATGGAAA
AAAATAAAAATAAAATTGTTGTTTTCAAACTTTAATGTTGGAGAAAATAA
AATGTGTTTTGAGGAAACTTACATACACAGCAGAAAATCAAAGAAAGTTT
TTCAGCTGGAAATTGGAGGAAGCATATTGGGAAAAAGAGATATCTGTTTT
TATACCCTTTTATCTTCCTTTCCTGCTCTTATAAAATGAAGTTTTCTAAA
AAAAATCCATTTCATGGCAGATTAAACAGAATCGGAAGTGCAAAAATAAA
TAAAATTTCTATGAATTTCAATTTTATTTTTGCAAAAAAAACGTCGACGA
TTCCGTAAACCAGAAAATAAAAAAGTAATTGCCTTACGGCTTTAAATTTA
TCAAAATGGGGTCGTTGTTACAAACCTAGTCGAATTTAGTGCATCAAATC
TGCAAAATAATATAATTTTATTACTAAACTGTGCTGAACTGTACATAAAA
ATATTTAAAAAATTGGAAAAATTCTGAAAGATTTCTGAAGATTTTTTTGA
AAATTCCTGAAAAAAAAAATATATTTTCCAAAATTGTTAAAAAAATGCTC
CATTTTGGCTGATTTTAGAACAAAATACTAAGATTTTTCAAAAATTTCTT
TTATTTCACCACGTCACTAAATGTCATGATGTCTGAGATTTAAGTACCGA
CCCCCCCCCCTGGGTGATCTTAAGATTCTTATAGTTATATTTGCTTGCCA
TGTTATGTTTCATTAATCTTTTCGTATCCAAAATTCCTTAGTTAATGGTT
TTTTGGCTCCATCAAGATGCAACAATGATATTTTTACATCCTCTGTGTAT
ATCTATTAATAGATATAAAGCAACTAAAGTTTAAAAGACATTCTCCTCTA
AATATCTGAATAATTCACTGTATTAAATTTGGAATTAAGCCTTAAGTTTG
AATACTACTGTATACAACCAAGTCCAGCCAAGTCACTTTAATCACTCCAT
CCAATCAATCAATAAGCTTGGGGGGACCTGGGCTAATTGGTTATGCACTA
AATCTTATCTGGATTGCATCTTTTCGTATCCAAGGTTCCCTTGATAATGG
AATTTTGGCTCCGTCAAGATGCTATATAAATATTTTTATATCCTCTGTGT
TTATCTAACGATGGATAGAATGCAACTAAATTTAAAAAGACATTTCTACC
TTTGATTCAAAAGAAATCTAAATTGCTGGTTGTTCGCTTTTTAGAATTTT
TTAATTTCTATTGGACGTCTCAACCACATTGGTACTAGAGGGTGGGCTTT
TCTGTTCGGTGGGGAAACTAATGTTCATAAGCTCCTGAAATAAAGCTTTC
GACTATATAACAAAGCTTCAACATAAAATTTTGACACCTAAAACTTTTTA
CATCTTGAGCATGATGACATTTCTGACAGAAAGTGTAATTTAAATTGAAG
ACACATTCTCAGTTCAAATTTATTTTTATCTCTGATATATTGCTCAAGCC
TGCTCAAACTGTAATTTATTGCTAATGAATATTTAGTATAAAATAAGCCT
TCTTGCCTCAGGAAATTTTTCATGCCTGATATGTCGCGTTACCAAAAAAG
TTTGTTAAAAGATACCTTATTTTGTCAAGAACCTTTTAAGCCAGATTTAA
TTCAAAAAGACCATCAAAAGTTCAGGGATGGTAACAGGAAAAGCCCCACC
CCTTACCCCTAGTTCTGAAACGCCCCTAAAAGCCTTATATTTTAAGACTA
ACTCACGGTGCCTGATAGATTGGTCTGGAATCATCTAATTGATTAGAAAA
ATTAACCAACACTAGTCGTTGTGGGGTTGACTACTAAGGAAAGGAAGGCA
CTTCAGATACCAGTCCATCCCATATGTCAATGCATCTTTTCGTATCCAAG
GTTCCCTTGATAATGGAATTTTGGCTCCATCAAGATGCAATATGAATATT
TTTATATCCTCTGTGTTTATCTAATAATAGGTAGAACGCAACTAAAGTTA
AAAAGACATTCTCCTCTAAATATCTGAATTATTCACTGTATTAGATTTGG
AATTAAAGCAAAAGCCTTAAGTTGGAATACTACCGTATACAACCAAGTCC
AGCCAAGTCACTTTAATTACTCCATCCAATCAATCAATAAGCTTTGGGGG
ACCTGGGCTAATTGGTTATGCACTAAATCTTATCTGGACTGCATCTTTTC
GTATCCAAGGTTCCCTTGATAATGGAATTTTGGCTCCATCAAGATGCTAT
ATAAATATTTTTATATCCTCTGTGTTTATCTAATAATAGGTAGAACGCAA
CTAAATTTAAAAAGACATTTACTCCAATTTAAAGTATTTATTGGCTTAGA
CGCCGTAAGCCGCCTCAAATAAAAAGATTTTCTCCTGATGCAAAGTGAAA
TCTTTCCTTGCATGCATTATCTAAAATCTTTTCACTATATGGAATGTTAC
CTTTAATTCGTTGTTGTTTTCCTTTTTTAGCGTGGTGGATTTGGCGGTAT
TGGTCGTGGACGTGGTGGCCCTCCACCAGCTCAAAATGGCGGCGGCTTCG
GTGCACCACCACCATCATAATGATCACAATAAATACCTTGTACAGAAACC
TATAACTTTGATCATTTTTTCCTTTAACCAAGTTTCTTGCTCCAACCATA
ATTTTGG

Coding sequence (CDS) from alignment at sc0000106_pilon:1124698..1130154-

>MSTRG.13444.1.p1 ID=MSTRG.13444.1.p1|Name=MSTRG.13444.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000106_pilon:1124698..1130154- (Clytia hemisphaerica_ch_hm2_pilon)
CGTGGTGGATTTGGCGGTATTGGTCGTGGACGTGGTGGCCCTCCACCAGC
TCAAAATGGCGGCGGCTTCGGTGCACCACCACCATCATAAACAGAGAGAA
CCGATCTGGACCACGAGGAGGAGATGACCGTGACCGTGATTCTTACAGAC
GTGATGGTGGAGACAAAGGAGGAGCTGGATCAGACTTCAAGCCAGAATTC
TCATTGAAATCTCGTGGTTATGTCAGAGAAAACTTTGCATGGAGACATGG
TTATTATTACTTGACAAACGAGGGTATTCAATACTTAAGAGACTTCCTCC
ACCTCCCACCTGAAATTGTCCCAGCAACTTTGAAGAAAACTACCAGCAAG
AGTGATACACCAAAACCATCATGGAAAGATGATCATCACAAAGAAGAACC
GTGTCGCCATTTACGAAGCTCTTTTTAGAGATGGAGTTATGGTTTGTATC
AAAGATGGTAACAAACCAAGTCACAATGAATTGACTTCCATCAGAAATGT
CCAAGTTATGATGGCTATGAAGCGTGGTGGATTTGGCGGTATTGGTCGTG
GACGTGGTGGCCCTCCACCAGCTCAAAATGGCGGCGGCTTCGGTGCACCA
CCACCATCATAAACAGAGAGAACCGATCTGGACCACGAGGAGGAGATGAC
CGTGACCGTGATTCTTACAGACGTGATGGTGGAGACAAAGGAGGAGCTGG
ATCAGACTTCAAGCCAGAATTCTCATTGAAATCTCGTGGTTATGTCAGAG
AAAACTTTGCATGGAGACATGGTTATTATTACTTGACAAACGAGGGTATT
CAATACTTAAGAGACTTCCTCCACCTCCCACCTGAAATTGTCCCAGCAAC
TTTGAAGAAAACTACCAGCAAGAGTGATACACCAAAACCATCATGGAAAG
ATGATCATCACAAAGAAGAACCGTGTCGCCATTTACGAAGCTCTTTTTAG
AGATGGAGTTATGGTTTGTATCAAAGATGGTAACAAACCAAGTCACAATG
AATTGACTTCCATCAGAAATGTCCAAGTTATGATGGCTATGAAGCGTGGT
GGATTTGGCGGTATTGGTCGTGGACGTGGTGGCCCTCCACCAGCTCAAAA
TGGCGGCGGCTTCGGTGCACCACCACCATCATAAACAGAGAGAACCGATC
TGGACCACGAGGAGGAGATGACCGTGACCGTGATTCTTACAGACGTGATG
GTGGAGACAAAGGAGGAGCTGGATCAGACTTCAAGCCAGAATTCTCATTG
AAATCTCGTGGTTATGTCAGAGAAAACTTTGCATGGAGACATGGTTATTA
TTACTTGACAAACGAGGGTATTCAATACTTAAGAGACTTCCTCCACCTCC
CACCTGAAATTGTCCCAGCAACTTTGAAGAAAACTACCAGCAAGAGTGAT
ACACCAAAACCATCATGGAAAGATGATCATCACAAAGAAGAACCGTGTCG
CCATTTACGAAGCTCTTTTTAGAGATGGAGTTATGGTTTGTATCAAAGAT
GGTAACAAACCAAGTCACAATGAATTGACTTCCATCAGAAATGTCCAAGT
TATGATGGCTATGAAGCGTGGTGGATTTGGCGGTATTGGTCGTGGACGTG
GTGGCCCTCCACCAGCTCAAAATGGCGGCGGCTTCGGTGCACCACCACCA
TCATAAACAGAGAGAACCGATCTGGACCACGAGGAGGAGATGACCGTGAC
CGTGATTCTTACAGACGTGATGGTGGAGACAAAGGAGGAGCTGGATCAGA
CTTCAAGCCAGAATTCTCATTGAAATCTCGTGGTTATGTCAGAGAAAACT
TTGCATGGAGACATGGTTATTATTACTTGACAAACGAGGGTATTCAATAC
TTAAGAGACTTCCTCCACCTCCCACCTGAAATTGTCCCAGCAACTTTGAA
GAAAACTACCAGCAAGAGTGATACACCAAAACCATCATGGAAAGATGATC
ATCACAAAGAAGAACCGTGTCGCCATTTACGAAGCTCTTTTTAGAGATGG
AGTTATGGTTTGTATCAAAGATGGTAACAAACCAAGTCACAATGAATTGA
CTTCCATCAGAAATGTCCAAGTTATGATGGCTATGAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13444MSTRG.13444Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13444.1.p1MSTRG.13444.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13444.1.p1.exon5MSTRG.13444.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13444.1.p1.exon4MSTRG.13444.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13444.1.p1.exon3MSTRG.13444.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13444.1.p1.exon2MSTRG.13444.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13444.1.p1.exon1MSTRG.13444.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106_pilongenomesc0000106_pilon:1124698..1130154 -