MSTRG.13424.4.p1 (mRNA) -

Overview
NameMSTRG.13424.4.p1
Unique NameMSTRG.13424.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000106_pilon:898339..900412-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13424.4.p1 ID=MSTRG.13424.4.p1|Name=MSTRG.13424.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2074bp|location=Sequence derived from alignment at sc0000106_pilon:898339..900412- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTGATCATATCGAATAAATCAATTCAAATATTCGAACCACTCACATCT
CATCATGAAGGTTTTCATCGTCTTAGCTCTTTGCGCTGGTAAGAAACATT
TTTTTATCTGACACACAACGTCTCGACAACATCCATCTATCGTCCATTTC
ATCAACGTTAAATGAATGTTTAGACAATGTTATGCCCCGATGAGGGGAAT
CTTATCTCATCATTTCGAATTTTCCTGAATCATCTCTGTATATTGAAAAG
ACAAGGCAGTGTTGCCCGTTGTTAAATAAGGAAGTCTAGTGATTCTCTCA
GATAGTTGTCAAATAATCTATCCACTAATTTTGCGGTTTTCGGAACGGCA
CCATTTCTTGTTGTAACTGTAATTAATATATAAGCGACCGTAGTGCAGTG
GTAAAGCATCCGGCTACGGTTCGCAAGGTTGTGGGTTCAACCCCCAGCCG
GGTCATACCAAAGATTCCCAAAATGGTACTTGATGCCTCTCTGCTTGATG
CTCAGCAACTAAGAGAAGGATCAAGGGTAAGTGGAGAAATCCAGGGAGAA
AGAGTGGCGCCCTCCCCTACCTTCGGGTAGATAGCTATCGAAAGAGGAGC
CTTCGGGTCGCCTCCGACTGCGGTCGCAGACTTACTTACTTAATATATAA
GGATCTGATGAAGGTAGCATTCCTCTGTATTTTCTAGCGATAAACAAATG
AGTGATTTAAATTGTTTTTGACTTTATTGAGCGTATCGAAAAATTCCAAA
AACAGTGTAATGATTAATACGCACTTTTCTCAATTCTTTTGTAGCTTCTT
ACGCCCTTGAGGTTGAAAAGATCACTGGTACCACACCACCAGCTGTACCG
TGCCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTA
CTACTATGGCCAATACAGAAGCAACTATTTCGTCCAATGCTCAAATGGAT
TAGCTGCCTGTCAACCATGTTTCCCATTGTCTTTGGAATTCAGTCAATCA
TGCAACCAATGTCTTTACAATAAACAGGGTAAGAATGGTTGAGAATTTTT
TTGTTTTCACAAAAAACCTCAGCCCTTAAAACACCAATAATGAATCGGTA
CAATTAAGAAATAAAAGACCAAAGTGAACAGATAGCCTTATTTAAAATAT
AATCATAATTTGAAACAAGAATCAAGTTTTCGGTTTAGTTCCATATGTGT
TCCTTGGTATTGTAAACTAGATGCATTAAAGCAACTAAATTTATATTAAG
TCATTTGATAGAAAAACGTACAAAAATGAATGTTCTGCTCGTATTGTTTA
TCCGATTATACACCCCTGTGTCACAGACCCGTTGGGACCCCAGCCCCACA
GAAAAATTTAGCGAAAATTTCGTCTTCGGTGGGACGTTCCCTGGAATTTC
AGCCCCACTTTGACTTCATCCCCACTCGAAATTCAATGTTTAAAAACTGC
ACTCCAAAATCATCCCCACTTGGTCTTTCCACCTTGGAACAAAAAGAATT
TTTATCCCCATTGGGATTTCAATAGGAATTTTTATCCCCATTGAGGAAAA
TAGTTCGGCTGGGGTGTGATTATGTACACTAAACGTTGACTTGGAGCAAG
TTTTTAACCTGTTGTCCTTTTTTCATTTAGACGATTGTGTTACCACACAA
CCATGGGAACCAGCAACCACTTTAAAATGCACTGATATTTGCCCAACACG
AGGACCTGAATTCAGTGGCAACATTGAAGATCCACACAGCCCATTCCAAT
ACATTGCCTGCTGGAAGGGAGTCACTGTAGGATGTGTTGCTTGCCCAAGT
GGTTTACAATTCAACGAGAAATGGAATGCCTGTTTGTTTGATGGTATCTA
CAAGACTGCCCCATCTCACTAAATTCTTTGATATTCCAACATTGATTTAT
ATCATGTACTGGATACATGTGCTTTGGATATTGATTGACCAAAGTCAAAA
AAACGAAAATTTTTGTAACATTTGATAAGTATTTGTAATCATTATTTTTA
ATTGAAATTTGTATTTAACTTCGAAACTATTTTTTTGAAGAATCACAACC
GATAGAATAATAATCTCAGTATAA

Coding sequence (CDS) from alignment at sc0000106_pilon:898339..900412-

>MSTRG.13424.4.p1 ID=MSTRG.13424.4.p1|Name=MSTRG.13424.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000106_pilon:898339..900412- (Clytia hemisphaerica_ch_hm2_pilon)
ACGATTGTGTTACCACACAACCATGGGAACCAGCAACCACTTTAAAATGC
ACTGATATTTGCCCAACACGAGGACCTGAATTCAGTGGCAACATTGAAGA
TCCACACAGCCCATTCCAATACATTGCCTGCTGGAAGGGAGTCACTGTAG
GATGTGTTGCTTGCCCAAGTGGTTTACAATTCAACGAGAAATGGAATGCC
TGTTTGTTTGATGGTATCTACAAGACTGCCCCATCTCACTAACTTCTTAC
GCCCTTGAGGTTGAAAAGATCACTGGTACCACACCACCAGCTGTACCGTG
CCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTACT
ACTATGGCCAATACAGAAGCAACTATTTCGTCCAATGCTCAAATGGATTA
GCTGCCTGTCAACCATGTTTCCCATTGTCTTTGGAATTCAGTCAATCATG
CAACCAATGTCTTTACAATAAACAGGATGAAGGTTTTCATCGTCTTAGCT
CTTTGCGCTGACGATTGTGTTACCACACAACCATGGGAACCAGCAACCAC
TTTAAAATGCACTGATATTTGCCCAACACGAGGACCTGAATTCAGTGGCA
ACATTGAAGATCCACACAGCCCATTCCAATACATTGCCTGCTGGAAGGGA
GTCACTGTAGGATGTGTTGCTTGCCCAAGTGGTTTACAATTCAACGAGAA
ATGGAATGCCTGTTTGTTTGATGGTATCTACAAGACTGCCCCATCTCACT
AACTTCTTACGCCCTTGAGGTTGAAAAGATCACTGGTACCACACCACCAG
CTGTACCGTGCCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTC
GAATACTACTACTATGGCCAATACAGAAGCAACTATTTCGTCCAATGCTC
AAATGGATTAGCTGCCTGTCAACCATGTTTCCCATTGTCTTTGGAATTCA
GTCAATCATGCAACCAATGTCTTTACAATAAACAGGATGAAGGTTTTCAT
CGTCTTAGCTCTTTGCGCTGACGATTGTGTTACCACACAACCATGGGAAC
CAGCAACCACTTTAAAATGCACTGATATTTGCCCAACACGAGGACCTGAA
TTCAGTGGCAACATTGAAGATCCACACAGCCCATTCCAATACATTGCCTG
CTGGAAGGGAGTCACTGTAGGATGTGTTGCTTGCCCAAGTGGTTTACAAT
TCAACGAGAAATGGAATGCCTGTTTGTTTGATGGTATCTACAAGACTGCC
CCATCTCACTAACTTCTTACGCCCTTGAGGTTGAAAAGATCACTGGTACC
ACACCACCAGCTGTACCGTGCCCAGACTCCCTCTGCAAAGGAAAAGCTGA
CGGAAACTTCGAATACTACTACTATGGCCAATACAGAAGCAACTATTTCG
TCCAATGCTCAAATGGATTAGCTGCCTGTCAACCATGTTTCCCATTGTCT
TTGGAATTCAGTCAATCATGCAACCAATGTCTTTACAATAAACAGGATGA
AGGTTTTCATCGTCTTAGCTCTTTGCGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13424MSTRG.13424Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13424.4.p1MSTRG.13424.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13424.4.p1.exon3MSTRG.13424.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13424.4.p1.exon2MSTRG.13424.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13424.4.p1.exon1MSTRG.13424.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106_pilongenomesc0000106_pilon:898339..900412 -