MSTRG.13412.3.p1 (mRNA) -

Overview
NameMSTRG.13412.3.p1
Unique NameMSTRG.13412.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000106_pilon:708386..710431+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13412.3.p1 ID=MSTRG.13412.3.p1|Name=MSTRG.13412.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2046bp|location=Sequence derived from alignment at sc0000106_pilon:708386..710431+ (Clytia hemisphaerica_ch_hm2_pilon)
tcttcagatgttttttggtatattttGTGCGAAAAGAATTTCGCgaaatt
cgaagaaattttcCGCCAAAAACCGAACATCGTCAACTCGTTGAGTGATG
GTTATCGGACACTTCTCATGCAGGCTGTTCGTGAAGAACGTTTCGACGTT
TTCGTTCACTTGATGATGAAATATCCTCAAGATTATTCACTCGTGGACCA
TAATGGTTCGAACGTTCTTCATTATGTTGGTGTTTATGGAGAAGTTCGTC
ATTTGGAAAAGTTTGATcaacaaacaatcaaaatgttGATCGATGGAAGA
AACAACTATAACGACACACCATTGCATAAAGCAGCAAGTTTCaacaatca
tgacgtcatcagatggtTGTTGGCCAAAGGAGCGAATCCTGAATTGAAAG
ACATTCATGGTCAACGCCCTGATGAACATGGATGGTGTGATGGTGTTACC
AAAGAAATCTTTCGATCGTTTCGTTCGTCTTGGTAAGAAAAATATCCACT
TTTTCATGGATAGGAACATTTTTTCGgttggaaatcttttttttctatta
tagTGCAAAGTGttaaaactttttcttaaaagtttttatttaaaatagat
gtgaaatgttttttaggtagactttaaatttttcagtttgataaatttta
ccTTTTCGGAGTTTAAATGAATGAAACGGataaattaatttcaatttttt
gattaagatttttcattgcattggagcagacatattttggagacatattt
ttgCAAATAGATGgttgtttatgaaattttttctctggttgttatgaatt
tatttttcagtgaagaaagaaattgtcgtttttttcgatttcataGTACG
TTTCTTATTATATTGTGTTCATGtatttgtttcaattgtttttcattcga
tgatttatttttcagattgattgattgtttccattgtCTCTTTCGTCGCG
CttccaatgacgtcatcggttccAAACATTTCCACGTAAGTCTATTTGAT
TATGTATTTGGTTTCTGGTTGAAGCAAAATTGTGTATGAAGCCTAAAATA
TCCTAACTTTGACCTGGAAGTAAGAAAAGGCTTTGCAACAACATGAGGCT
GAAAGTTCCAAAACAGGTTGTGATACTGTACCTCAAATAAGTTTagtagt
tcttataaaaaattgtacTGCTCCGTTATCAGATTCTCAGCATTCTCATT
AgctgctttaaaaaaaaacatttattcatCTTAAAGAAGTCAACAAGTTT
CGTTTGGCAATAAACctccaattttttatttttagattccCAACATGACA
GCACGCATGAGAAGTTACACCCGTTATTTTCGACGCCGTTTCTACGCTTA
CGATATTTATTCATTCCATCTCTACATTTCTGTAACGCATTTTGGCTTGC
TTTTAGATGTATTTTTACCACTTCACTATCTTGACTATTATTACGTCAAC
CGTCACTAGTTTTGGTGGCGTGTCTACTCTTGTGCCCTTACTTTTCCACC
TTATGGATTACCTCGGTTGAATATGAAAAAGAGTCACTATTGATTTCGAT
TGGATCACTTCCCTTGTAAATATCCGACTTTTTTCACTAACTCGGTGAAA
TTTTGCTCAGTCAGAAAACCCTGCCAACAGTGGCCTCGgtgaaaacatga
tttttttcttacaatcaAGGTTAAATTATCTAAGTACTGTCAAAGTTTTt
acggtttttttttcggaagaGACTCATGGGCGCTAAATATTGGATGGTTT
TAGTTTGCTCTTTATTTCAAGCCGATGAACATTTTTTGGTATATATATAC
GACGAATATTTATAtggtaatagacgatatcggcttaacatgaaaactca
gatttgatccccgagaattccccaagTTTCACAATGCTTTGcacggaaaa
aagttcacggtgaaataTTTTCCgtgcaaagcattgtggggaattctcgg
ggatcaaatctgagttttcacgttaagccgatatcgtctattagatAAGA
AGACTTTATCATTATATAGAATTGATAAATACATATACTGTATAAA

Coding sequence (CDS) from alignment at sc0000106_pilon:708386..710431+

>MSTRG.13412.3.p1 ID=MSTRG.13412.3.p1|Name=MSTRG.13412.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000106_pilon:708386..710431+ (Clytia hemisphaerica_ch_hm2_pilon)
tcttcagatgttttttggtatattttGTGCGAAAAGAATTTCGCgaaatt
cgaagaaattttcCGCCAAAAACCGAACATCGTCAACTCGTTGAGTGATG
GTTATCGGACACTTCTCATGCAGGCTGTTCGTGAAGAACGTTTCGACGTT
TTCGTTCACTTGATGATGAAATATCCTCAAGATTATTCACTCGTGGACCA
TAATGGTTCGAACGTTCTTCATTATGTTGGTGTTTATGGAGAAGTTCGTC
ATTTGGAAAAGTTTGATcaacaaacaatcaaaatgttGATCGATGGAAGA
AACAACTATAACGACACACCATTGCATAAAGCAGCAAGTTTCaacaatca
tgacgtcatcagatggtTGTTGGCCAAAGGAGCGAATCCTGAATTGAAAG
ACATTCATGGTCAACGCCCTGATGAACATGGATGGTGTGATGGTGTTACC
AAAGAAATCTTTCGATCGTTTCGTTCGTCTTGatcttcagatgttttttg
gtatattttGTGCGAAAAGAATTTCGCgaaattcgaagaaattttcCGCC
AAAAACCGAACATCGTCAACTCGTTGAGTGATGGTTATCGGACACTTCTC
ATGCAGGCTGTTCGTGAAGAACGTTTCGACGTTTTCGTTCACTTGATGAT
GAAATATCCTCAAGATTATTCACTCGTGGACCATAATGGTTCGAACGTTC
TTCATTATGTTGGTGTTTATGGAGAAGTTCGTCATTTGGAAAAGTTTGAT
caacaaacaatcaaaatgttGATCGATGGAAGAAACAACTATAACGACAC
ACCATTGCATAAAGCAGCAAGTTTCaacaatcatgacgtcatcagatggt
TGTTGGCCAAAGGAGCGAATCCTGAATTGAAAGACATTCATGGTCAACGC
CCTGATGAACATGGATGGTGTGATGGTGTTACCAAAGAAATCTTTCGATC
GTTTCGTTCGTCTTGa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13412MSTRG.13412Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13412.3.p1MSTRG.13412.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13412.3.p1.exon1MSTRG.13412.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13412.3.p1.exon2MSTRG.13412.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13412.3.p1.exon3MSTRG.13412.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106_pilongenomesc0000106_pilon:708386..710431 +