MSTRG.13381.1.p1 (mRNA) -

Overview
NameMSTRG.13381.1.p1
Unique NameMSTRG.13381.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000106_pilon:71690..78370-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13381.1.p1 ID=MSTRG.13381.1.p1|Name=MSTRG.13381.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6681bp|location=Sequence derived from alignment at sc0000106_pilon:71690..78370- (Clytia hemisphaerica_ch_hm2_pilon)
CCGTTATTTTTGTGTGTTTTATAGAATGTATTCAACATCCGTTTTAATTG
CTTGTGTTTTGGCAGTTGCGGTGGCAAGATCTGAACTTCAGAACAAGGTA
TTTTTGAAATCAAAAAACATGTACACTTTTTTTATGAGGACAAACCATAT
AAAAAACATTAGGTTTTGATTATAAGTTAAGAACATTTCAAGTTTTTGCA
GACTTTAAAACACCCAATTTCTATGGAAATTGCACAAAAATACTAAGAAA
ATGGTGAAATTAAGAACATTTTTAGGTTTAAAACTAAAAAAGTTTAGAAC
ATTCGAAGGCTTCAAAAATTTTGGATGTTCTTATAAAAAACGTACATGTT
GTTCATTATCTCCGCGAAAAAGTCAAAGTAAAGTATGTTCCGGATAATTA
TTGATATAACATGGAAGCCCGGAGGGGGGGGGGGCTTTATCCAAATACGA
CCATACGTGCGGCCCAAAATTAGGCCTTTGAAATCGGACCCTTACAGTGC
AGAAAAAACTTTTAGTGGGGTCGTTTAGCATAATTTACGGGAAAACAATA
AGATCTAGCTAAAACTTTCTCCAGTATACCATTCGAAAGCTCTCGAAAAA
CTATATAGAAGACATTTAAACGGGTATAGCTGATTTCATTACCTAACTCA
AGATAATTCACGCAGAAGATGCTATTTATGGTCAATTTAGACCAAAATGT
GGCGAAAAGTGGAACTTGCGCATGAAATATGTCGAGTTAGGTAAGGAAAT
CGGCTATAACCGTTTAAAAGTCTTCCATATAGTTTTTCGAGAGCTTTCGA
ATGGTATACTTGATAATGTCTGAAAATGAGTTTGAAATTTTCAAAAAATT
TCGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAAAAAAAGGGATGTTCCA
TCAGTGGGATTTTAGGGGAATTTTTCCTGAGGTATAAGCATCCTATAGAG
AAGGTCTGGAGAAAGTTTCAGCTAGATCTTATTTTTTCCTACAAACAGCC
TGTATTTTTGTAACACGACCACACTATTCGTAAAATTTGAGCAAATATGA
GCGAAAAATTTATCATAGCAGTGCATTTTCTTGAAAATCTTTGACCATTT
TCAAGCAAAATATGGTCAGATTTTGGAAATCTATATCCTTAGAGTGCAAT
TTTTCTCATCTTTGCTGATTTTGACCCTTACAGTGGTGCACTTTGGGAAG
CTTGGAAAATAAACCCTTAAGGGCTGCACGTATAGTAGGTCATTTACCTT
GAGTGCCCCCTCTCCCGGGCACGGAAGTTATTTTTTCTATGGAAACACCC
CGGTTTATACATTCTAGGAAATCACTACTTTAATGGGATAAACTTTCTCG
GGGATTGAATTTCGCGGATTTCGTGGATTTGGGTGTCATCCGCGAAATTA
AGTCCCAATAGCAATTTGGAAGGGTCCAGCCACGAAATATTTCTAAACAA
AACTCAAAATATGTCAAATAAATACTATTTGAATGGTTACTTGCATCAAA
GAGGCGCAAATAATGTGTATTTCAACAACCAACATGCATGATTTGACGGT
AAAAGTCACAAAATCGTGAAAATATTGCCACCCAATAGTGCAACCTGCGA
AATTAAGTCCCTGCGAGATTTTTGAATTTCGCGGATAGGCTCAACCGCGA
AATTTAATCCCCGCGAAAGTTTATCCTATTAAAGTACGCAAGAAATGATG
GGAAAATATAAAGTGGGAGAATTTCAATTTCAATATCAACATATCAGTCA
CCAATTACACCATTCCAGACAGTTCTATCCAAAGCTTTTTTAATAGGCTC
TTCCTGAAAATGTCCGTACGTGGGGGGAGGATAATAGTGTCCGGGGGTAA
TGAGAAATCTACAAGATTTGCCCTGGTAAAAATTCTTGATAAGATCTGAA
AAGATCGTCGAAGATCTTTCAAGATCTTTAACAAGTAAGAATCTTATAAG
ATCTTTGTAAGATCTTACAACGATTCTTAGGCAATCTTGAAAATTTCTTC
CAACAAAAAGATCTTTAAAGATCTTGTAAAGAAATCGTTAAGAATTGTCA
AGATTCTTCCCGCATATTTATAGTAAGATAATTATTATTTCTTATTAAGT
TCTTAAGTAGAATCTTACGAAATCTTGAGCCATAAAATATTTTAAGATTC
TTTGCGTAACTTGTAAAGTTTTTATAAAGAGACTTTCCAAATCTTAACTA
ACTATTATGTGCAAAGAAGCTTTAAGATTCTTAGTGGTTCTTATCAAGTT
TGAGTTAGGAATCTTAAAAGCACGTAAATTTCTGGTTATGATTGTTTTTC
ATAAGAAGGAGTCTTTAGACTCAAGGGGAGCAATCTCTTAGGATAGTATT
TACGAAACAGTTTTTGGTCAGCTTCGAAATACGGTAAGTGGTTTTTTTCT
TTTGTGAGTGTGTTATCATTGACTGTACTAATGAAATAGTTGATTAATGA
CGAGGTCATCAGTTGAATGCTGTCACTCGAGCGAAGCTTTCGGCCCTTAT
TCAATAACTGAACGGGGATAGTAGTAATATTCCGTCAGCGACCGTAGTGC
AGTGGTAGAGCATCCGTCTACGGTGCGCAAGGTTGTGGGTTCAACCCCCG
GCCGGTCACACCAAAGATTCCTAAAATGGTACTTGATGCCTCTCTGCTTG
ATGCTCAGCAAGTATGTGGAGCAATCCCTCCCCTACCTTCAGGTAGATAG
CTATCGAAAGTGGAGCCTGCAGGTCACCTCCGACTTACTTTTACTTAAGA
TTCCGTCAAGATCTTGAATCACTGTAAGGGACAAGAATCTTATTCAAAAC
TTATAAAAGAGTCTTATCAGATCGTTAAAGATCTTGAAAGATCTTGGCAC
GTTCGTAGTAAGAAACTGAAAAAGAATAAGCAAAGTTTCTTGATAAGATC
TTTTCAAGAACTTTTCAAGAATTTTTACCAGGGTGCCTTGTCTGGGGGTT
ACTTGCTCTGTTTGGGGGTAATTTTGCTCTGTTTGAGGATAATTTCGATT
GTCCATGGGGTCAACTAATGCTTGTCTGGGGTGTAAGACCTGCTGTCCGG
GGGTCAAGAGTCACAATGTTTGGGGGGGGTAAATTTCCAAAAAATTTTAT
ATCCTCCACCCGCAATATTCGAATTTTTTTCTGGAAAAGCCCAATTTCCT
TTTTTTAATCACTAGCCATTTACCACTGAAGAAGAAGCATATTATGACCA
ATTAATGGAAGATGTTTCAACAAATGAACGCAATTGGAAAGAATGCGCAT
GGGCTAATTTTGGTAGCTCCAAACAAAATGGTGAAATCAAGGTAAGTTTC
AAGCTTCTTGATACACTGCAGCTTCCATAATTCGAACACGTACGGGGAAA
ACAATTTTGTTTGTATTATAGAAATTTCGAGTAATGGAGATAAGATGGTA
AAAGATAATGGTTTTACATTGCATTGTTAATAGACTAGCAAACTAGTCTG
TTAATTAATCATGTCAGAGGGCGTAAACATAAAGGTGGCGGGCGTTTTCT
AGAAAAGGAGCTGCGTAGGAGAACGAGCAAAAGTTGGTGAGACGCTGCTG
ATTAACTTGCTTTCAGCCCTTGCCGCCGACAAAAATTCTTCCTGCCAGTC
TACATTGTTAACTGAAGGGACCAGAAAATTGTCCGAGTTGAGGAGGCATT
TGAGATTTATTTTATGAAGACTCTTTTGTATATCCGTCCTTTATTTTTGT
TACACAGTAGACTCTCGCTTATTCGAACTTCTATTATTCTAAACCTTTTA
TAATTCGAACTTATTCTTAGTCCCTTTCAAGGAGAAATCTTCTTAAAATA
CTTTCTATAATTTGAATCCTCCGTTTTCACTTAATTTAAGTTTTTCATAG
TGCAGCCGGCTCTCCCCAATTCGAATCTCTGTGATTCAAATCTTTCTCTT
ATTCGTCTCTTGTCTGTCTTTTGAAAATCGAATTCTAGCGAGAGTCAGTT
CTGTAAAGAATGTTAATGACGTTTGCTTCTGGCTAAGAGTTTACTCGTAG
TCTGGGGTGATAGCGGCGATACTTCATATACAGCTATAACTTTTTATGCA
GGATTTTAGCTGGCCTCCACAGTAAAGTGTTAGGGGTCACTTTAGAAAAG
GCTGTAAACAACGCCGAAATAGCTTTTTTGTTAAAACGAAGTATAGAGGG
ACGGCTGGAATCAACATATTAAAATCACCTGATTTTTTACGGTCTTAAAC
CAATGAGAAGCGAGGAGCAGAGCTACTACACCCACAACGACTGTGGACAT
GGTGATATTGTTCGTTATAGGATAGTAAAACGCTGGACAATGTTAACGCG
CAGTTTCCCAGGTGTAATGACAATATACAGGACAGTGCGAACCTTTTCGT
CACTGTTTACTCAACCCCTAGAAAGCACCTCACTAAAAACCGGGATTTCT
CGTCCCATTTCCTATGATTAACTTAATTGCGTAGAAAACGAGGTTGGCGT
CTAGTATAGGCTACTCCACACCGAGCTCTGCAGCTGTTTTCGAAATCATC
CTTCTTTCTAAATTATTCCATTTTCGATTTAGGATCATCTAACAACAGTG
TTAGTCATGAACTGTTTTTTTTTCTATACAGAGCTGTTACTTTAACAAAA
AATCAAAATCATCCCATCTCAAAGTCATCGTTTCATCCGACATGTCTTTG
GAAGGTTGTAGTAAGTGTTTTAAAAGATGGTTCGTTAAGTTTAATGGCCA
AGAGTGCTCTCCGGCCCCCATTGATGTTGTTGTTTTCATGAGGTAATTAT
ACGCGGTGTTTTTAAATGCTTATGTAAGGCAAAAATATGATCCTAGCCGA
TAGGATTTTTCGTGGTTTTTTTTTCAGAGTTTGAATTTTTTTTTTGTAAT
ATTTATCCCAAACCCCCAAGAAAGCAAATTTGCGTTAACGATCGCGTTAA
ATGTGAAAATGACAGCCAGTTTAATTAATAAGTAAAATGTAATGGTTAGC
TGCAACTGAATATCAAGAAAAGTTTTTCATACAAAAGACCTCTTTCGAGT
AGTACACGCTTTTTTAAAAAAGAATTGTGTAAACCCATTTCATCATGGAT
ACTCTTAACTTTTTTGGGAAAATCATCCTAAAATATTCTTACAGCATTCT
TAGGTTTAGGATTATCATTCAGACTCGATTTAATATTTAGTACATGCGCC
TCAAGCATACAATGTCATTTCTGTGAAAAGAGTGAGCCTTACTTGTGGGT
AATTGACAATTTATAATTGAAAATACTTAAAAATGGCATTCTTAGCTTGA
GTAGCAAATTCCATGATGGTGATATTCTTAGATTATTCTTCATTTTTTTG
CCATTTTCATCATGGACATTCTTATAAAGTGCATTCTTGTAAAAAAAGTG
TGTAATGATACTGAATTGCTTTAATCTTCAATTCATCAACTTCATTTGGA
AGTAACAATATTTTTTCTTCCTTCTGTGCAGATATGGAATGGGTAATTAT
TATATTATTATTATATTACAAGTCGCTCCACTGACCCAGGGTATTGCGAG
GAACATGCAAGGTATTTGTTACTATAAACATAGTGTATTTAAAGATTTGG
CCAAAATCTGCCAAATTTAATCCCATCATCCGCCTAATTAAATCTCCTCT
GAGAACATTTTTAATATCGGCCAAAATTTTTTCCTTTAAGATATGTCTTT
CGTTGGAGCTCGAGGTTTAAATCAAACCAAATAACTGGGTTAGCATTTGC
AGAAATTTGATTAATTTTAGTTTACTGCCCAGGCCTTTTAATTAACGAGT
TTATGTATTTGCACTTTTGAGGACGGTAGAGTGACTGAAGCGATTTGGAG
AAACCCGCAATTCTGACCTGCAAAATCAAGGACTGTAAAAGTGCTGATTT
ACCGTCGTACTTAGCTGGTCAGGATCTAGTCAAATTAGAACCTCACCGCC
TCCGTCGCAGAAAAACACACCAAGACATTGCCCCATTGACTGACTTTCAA
AATCTGATTTTTTCCGGTTGGACAATTATCTTACTCTCCTCAGGGGAGAT
TTTCCGTGGATTATTGTCCTAGAATCACCCTGCAACCACCTCTCCCCCAA
TACAACAGATGGGATGGAAATTAATGGATTTCGACGGCTCTTTTTTTTTT
TTCAGATTGAGATAAACGGATTAATCGATGTGTCCTTTAATATCGGAAAA
TGTCCTCATTATGGTCGCAACGCTAACGGTAATACTGGATGGATTTCCTC
AACCCGGATCTACATTGAAGAAATGAATGAACCACAACCAAAACAAGTCT
GGGAAAATGACGCTGCTTTGATTTGAATTCTTAGTTCAAAGGCGGCTTTC
TGTTTTTTTTTCGTAGCACCGTATTACTTCGAACAAACGCCCCGGGCAAG
CAGAGTCATTGTTTGGGTACCAAAAACCGAGCATGTATATGCTTATTCTT
GACTGATATACCGCTCTACCGATATGGTATTGAGCACTTTCTTGGATCGC
AAGTCAGATTTGCAAATATATTCTTATAAACAATATGCTTATAAAAAAAC
ATGTTTGGTAAGTCCGAGTTGTTTTTGGACAATTTAAATGTTAGATTTTC
TGTGGAATTTGAATTTTTAGTATATTTTAAACACTAGGTATTCCAGTCAA
CTCTCTCTAATTCGAGCCTCCGTGATTCGAACCTTTCTCTAATTCGAAAT
AAAAGGTTGGCCCTTTCAGCGTGAAATCGAT

Coding sequence (CDS) from alignment at sc0000106_pilon:71690..78370-

>MSTRG.13381.1.p1 ID=MSTRG.13381.1.p1|Name=MSTRG.13381.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000106_pilon:71690..78370- (Clytia hemisphaerica_ch_hm2_pilon)
ATTGAGATAAACGGATTAATCGATGTGTCCTTTAATATCGGAAAATGTCC
TCATTATGGTCGCAACGCTAACGGTAATACTGGATGGATTTCCTCAACCC
GGATCTACATTGAAGAAATGAATGAACCACAACCAAAACAAGTCTGGGAA
AATGACGCTGCTTTGATTTGACCATTTACCACTGAAGAAGAAGCATATTA
TGACCAATTAATGGAAGATGTTTCAACAAATGAACGCAATTGGAAAGAAT
GCGCATGGGCTAATTTTGGTAGCTCCAAACAAAATGGTGAAATCAAGCGT
TATTTTTGTGTGTTTTATAGAATGTATTCAACATCCGTTTTAATTGCTTG
TGTTTTGGCAGTTGCGGTGGCAAGATCTGAACTTCAGAACAAGATTGAGA
TAAACGGATTAATCGATGTGTCCTTTAATATCGGAAAATGTCCTCATTAT
GGTCGCAACGCTAACGGTAATACTGGATGGATTTCCTCAACCCGGATCTA
CATTGAAGAAATGAATGAACCACAACCAAAACAAGTCTGGGAAAATGACG
CTGCTTTGATTTGACCATTTACCACTGAAGAAGAAGCATATTATGACCAA
TTAATGGAAGATGTTTCAACAAATGAACGCAATTGGAAAGAATGCGCATG
GGCTAATTTTGGTAGCTCCAAACAAAATGGTGAAATCAAGCGTTATTTTT
GTGTGTTTTATAGAATGTATTCAACATCCGTTTTAATTGCTTGTGTTTTG
GCAGTTGCGGTGGCAAGATCTGAACTTCAGAACAAGATTGAGATAAACGG
ATTAATCGATGTGTCCTTTAATATCGGAAAATGTCCTCATTATGGTCGCA
ACGCTAACGGTAATACTGGATGGATTTCCTCAACCCGGATCTACATTGAA
GAAATGAATGAACCACAACCAAAACAAGTCTGGGAAAATGACGCTGCTTT
GATTTGACCATTTACCACTGAAGAAGAAGCATATTATGACCAATTAATGG
AAGATGTTTCAACAAATGAACGCAATTGGAAAGAATGCGCATGGGCTAAT
TTTGGTAGCTCCAAACAAAATGGTGAAATCAAGCGTTATTTTTGTGTGTT
TTATAGAATGTATTCAACATCCGTTTTAATTGCTTGTGTTTTGGCAGTTG
CGGTGGCAAGATCTGAACTTCAGAACAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13381MSTRG.13381Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13381.1.p1.exon3MSTRG.13381.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13381.1.p1.exon2MSTRG.13381.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13381.1.p1.exon1MSTRG.13381.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13381.1.p1MSTRG.13381.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106_pilongenomesc0000106_pilon:71690..78370 -