MSTRG.13342.1.p1 (mRNA) -

Overview
NameMSTRG.13342.1.p1
Unique NameMSTRG.13342.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000105_pilon:532368..536561+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13342.1.p1 ID=MSTRG.13342.1.p1|Name=MSTRG.13342.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4194bp|location=Sequence derived from alignment at sc0000105_pilon:532368..536561+ (Clytia hemisphaerica_ch_hm2_pilon)
AaaatttcgaccaatcaaatgaATGTATGAAAATCATGTGACACCGTCGt
gcaaaaatgtaaacattgaaaaaatttttttaaagggacatgCAAAAGTT
GTTTTGAAGCTGTGAGCTGGTACAAAATTTTTCTAAGTGACAGAGAATAC
AATTTAATCATGACAGAAGTGGCATCATTATTAAGAGAGTCTATTGGCAG
TGTATGTAAAGATGAAATCGATCTTACCCCTCCAGCTAAAAGGGTTAAAA
TGGAGAGTGAAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCTTGAGTCA
AGATTGATCAGTGTTCTTTCTTGTGTTATATGCTTTGATTTACCCTCTGG
TTCCATATATCAGGTAAGACATTTCTGATATTTGTCAATTATATTGTGTT
ATTAAACCCTGTCACCTGTTGAGAAATATTAGCAGTAGTGCTTTGTAATG
ATTCTTAAaggaactttttttgaaaaaagagcAAGCCCTAGTTTGCCTGA
TTTTTACCAGTTTACTTCAAAATTGTTTCCATTTTTAAAGGTTAAAGCAG
GTGAATGAATGACAGAATGAGAAAGGAGATGTTACCACGTTACCTAATGC
TGACCTGgaaaagttttaagaatttGTAATTATAGCCAGAGTAACTATGG
CCGCCTGACCTGTCACTAGGAGTGCCTTTTTCCCATTCACACTGTTACTA
TGGGTCACTGCATAATTCTGcaattgaaatatttatgaGTCAACTGTTCC
TTTTATAGTGTCTCCATGGACATTTGATGTGCATTGGATGTTTTAATCAC
CTCCTTGCTGATGCTAGGCTGAAAAATGAGCAAGCACAATGCCCAAGCTG
TAGAGCTGACATAAGTTCTAAGAACTCATCTCGCAATTTAGCGGTTGAAA
AAGCGGTATCTGAACTGCCAACATACTGCAGATACTGTGAAGATGAATTC
CCACGAAACCAAATCCCTTTCCATGAAAAAAGTAAATGTGACCAGAggta
tgtttagatttttttctacaaGTGTAACATTTTCTTTTAACCTTTAAGTA
TTCTCTTTTCGTACATTAATACACGtcttattttcctttttctcttGGTG
TGTGAGTTTACTATTCACCACAAACCAGTAAAATTTAATACATAGGgtat
tgttatattttgtatgtaactatattttatttgtttacagtattttttta
aaaaaatttcaaactttgaatatcCTAGATTATTTTATTGCAATTGTAAT
TCTACtttttttAATTCCATGTAAATATGTACAGTTTTAAGccttttttc
ccaaaattaCGTAAATAGTTTGTCACagcttttgaaacaattttgatACG
CTATTACATAATTTGCAtgagatttttatcaaattttgttaaaagtggCT
CTGCTTCCATTTCTATAATAATTTTGCAGCTTCTTCTACTTTTAAATAAA
TACTTTGCATTCTTTCATGATCATTATCAAACTTTagagtttttgaaaat
tgaaattgtatATTATCATGTTATTGTCTCTCTCACCTATGCAGTTATTC
TAGGAGTTGATGGCAAAGAAATTTCAAGGAAATGATGATAGACTTGGAAA
ATCTACATACTACATATATTTGTGATGACACATACTCTGTAGTAATGACA
GGTAAAATTACGCCAACCTTTAGTTCATATATATTTCTAGACATGCATGA
AGGTTACTTGAGTTAAGCACATTTCactaacaaaaagtttttgtttattt
gaaagtcTTCTTTTGCTGGTGCGGgggtaaattaaaattttgattgaatt
atatatgttttgaaattcgatttTCCATTCATCTGTCATCCTAGTTCATT
TCAATcttgtaaatattttaattttctagTTTTTAATTTATCAATTATTT
CAGATGTAAATGACAGATGAAAGGAGAATCTTTGCCCAAAACTCAACCAT
TTACTCATAGTATAtagaaaaacagaattttttcaatgaataataATGCT
CTATTTCAAAGATATCTAAATCATGTGGTTTTAGTTTAAAGCTTCTTTAA
TGTCACAAATTAATCTTCCTATAAATAAAACATAGAGCTAGTAATCGttt
caaaaagaatatttacAACTCTTTCTTGTAAAACTATTTCAGCACCCACA
TCAGCAAACTTCATAAAGCTcactttttaaggaaaattctCGCATCATAA
TGCTACCCTTGTTACAAGATAACACACAGGATGCAGAAAATGCTTGAGAA
GATAGACTAAAAGCCTTTGCTTTACAAGTTCCCTTCATGCATAGACAATA
TTTCTAAGTCAACTGGTATTCTGCGGTTGGGGGGTCCCTCTAAGATCTCG
ACTTAGAAATATTGTCAAAAGTATATTTGATAATCTAacctaatttcttt
cttttcaggTTTTGCAAAACTTGTGAATGAATTTCTTAACActctatttt
tgttttttctttagacCAGCCTGCTGTGAATATAAGGGCTTAGGTTGCAC
ATGGGTAGGTGTTCATCACCAAGTGGAGTCTCATGTCAAGGACTGTTTGT
TCCCACAGAAATGTGGAGCAGACCTTCTGGAGAATGTCAACATCATTGCT
GCAGAATCTAACGAGGAATTGAGGCGTTATCAAGACCTCTTCCAAATGTT
ATCGTATGAAAAAATCACTAATTGTGgtaacaaaatctttttgggGTTTT
TTACTCTTATTCAGTTATAAACattcctttcattttttttgataCACGTG
TGATTTAGTTATCGTATGCAAATCTATATGATTGATTTATGTAACCGAGG
ATTTAAATTGTGTGACGCAGGTCACAGAAAGATTTTCTAAACTTACATAA
ACGTGTTTTGCTTACTCTGGACAAAAATTGGGCTTTTaccaacttttcaa
aatttttaccaaGGAAACTCTAATTTTTTAGACATTCAACTATGCCCAAG
TCGCAGTGATGATTATATTCCCAAATTGTATTACGAGACAAACAAGTTCA
CTGCTTTCGATCAGTTGTGGACAATCAAGGCCAAAGTTGTCGGCAATGAG
AAAATTGCAGCACGTTCACTCTCATACCAATTAATATTAAAAGGTATTAT
ATGATAAACATATTTTGAATGTTTATAAAGACAGTTCAATGCtcacaaaa
acaacaacttctTGTCATGTGGGTTGTACTTTGAAACGTCACGTGAGAAT
TCGTTAATTAGCCATGACATTAAATCGATTCAGCCGGttgctttagaaaa
aaatttctaatattttttgcAAGGATCAGCTCAAAAgtttttctcatcaa
ttttcGTCAATTTAATACGTGTAAACATTTTACGGTAAGAGTTATAAAAG
ggtaatcagatggtttgagatatttggcctgCAAAAACCTTCTGGGGTCC
TGAGTAGAACCTCTAAGAATTTGTAGTTTTTCCCAAAGTTCTTGTGTTTT
GCACGGTTTCTTGCgtttaaattctattgttttcttactaATGGTTTAAA
AATTAGATATCTCGGCAAATATCACAAACCTTCTGGTAATCCCTTTAATT
AAGAATGCCTTCAATATGTCTGAAACTATTGACCTTAAAATATTAAGTCT
AACTATGCTGTTATTTTTCAGGAAAAGGGAACCACGAAATAAAATACTTC
CTGACGAAAGGACCCTTTGGAGATGCAAAGATCTCACCTGAAACACAACG
CTTCGAATTTCGCGATGACAACAAAGAGTCAGACTATCATCACATCGCGC
TGACAGAAGAGACCGATTGTAACCGCCTGCTAGCCGCACGCACAATCAAT
TTCCGAATCATGATGTTTTTAGTCAAGAAGTgaacaaaaaagcttttctt
tgTGTGtgtgaaaactgaaaatttgtcATGTGAATTTTTTACAAGGCTGT
GCAAATAGTTTCATGGTTTCATTTTTAGATTCACATTTCTTTATTGTAAA
AGTgtcattcttttgtttcaacGATCTCTTGAACTGAATTGATAAAATTA
TTACTTTGAAACTCCTGGATATACAAAAGTCAGCTAgaacttttgtttta
aagatatttctttCTTCCACTTTAACTTCCAGCCTTTTGATgtacataca
tgtttttttataagaacatccaaaatctttgaagccttctggtgttctta
gctttttgagatttaagcctaaaaatgttcttaaagtgttctta

Coding sequence (CDS) from alignment at sc0000105_pilon:532368..536561+

>MSTRG.13342.1.p1 ID=MSTRG.13342.1.p1|Name=MSTRG.13342.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5145bp|location=Sequence derived from alignment at sc0000105_pilon:532368..536561+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACAGAAGTGGCATCATTATTAAGAGAGTCTATTGGCAGTGTATGTAA
AGATGAAATCGATCTTACCCCTCCAGCTAAAAGGGTTAAAATGGAGAGTG
AAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCTTGAGTCAAGATTGATC
AGTGTTCTTTCTTGTGTTATATGCTTTGATTTACCCTCTGGTTCCATATA
TCAGTGTCTCCATGGACATTTGATGTGCATTGGATGTTTTAATCACCTCC
TTGCTGATGCTAGGCTGAAAAATGAGCAAGCACAATGCCCAAGCTGTAGA
GCTGACATAAGTTCTAAGAACTCATCTCGCAATTTAGCGGTTGAAAAAGC
GGTATCTGAACTGCCAACATACTGCAGATACTGTGAAGATGAATTCCCAC
GAAACCAAATCCCTTTCCATGAAAAAAGTAAATGTGACCAGAgacCAGCC
TGCTGTGAATATAAGGGCTTAGGTTGCACATGGGTAGGTGTTCATCACCA
AGTGGAGTCTCATGTCAAGGACTGTTTGTTCCCACAGAAATGTGGAGCAG
ACCTTCTGGAGAATGTCAACATCATTGCTGCAGAATCTAACGAGGAATTG
AGGCGTTATCAAGACCTCTTCCAAATGTTATCGTATGAAAAAATCACTAA
TTGTGACATTCAACTATGCCCAAGTCGCAGTGATGATTATATTCCCAAAT
TGTATTACGAGACAAACAAGTTCACTGCTTTCGATCAGTTGTGGACAATC
AAGGCCAAAGTTGTCGGCAATGAGAAAATTGCAGCACGTTCACTCTCATA
CCAATTAATATTAAAAGGAAAAGGGAACCACGAAATAAAATACTTCCTGA
CGAAAGGACCCTTTGGAGATGCAAAGATCTCACCTGAAACACAACGCTTC
GAATTTCGCGATGACAACAAAGAGTCAGACTATCATCACATCGCGCTGAC
AGAAGAGACCGATTGTAACCGCCTGCTAGCCGCACGCACAATCAATTTCC
GAATCATGATGTTTTTAGTCAAGAAGTgaATGACAGAAGTGGCATCATTA
TTAAGAGAGTCTATTGGCAGTGTATGTAAAGATGAAATCGATCTTACCCC
TCCAGCTAAAAGGGTTAAAATGGAGAGTGAAGCTGAAAAAGTGGACGAAA
AAAGAGAACGTCTTGAGTCAAGATTGATCAGTGTTCTTTCTTGTGTTATA
TGCTTTGATTTACCCTCTGGTTCCATATATCAGTGTCTCCATGGACATTT
GATGTGCATTGGATGTTTTAATCACCTCCTTGCTGATGCTAGGCTGAAAA
ATGAGCAAGCACAATGCCCAAGCTGTAGAGCTGACATAAGTTCTAAGAAC
TCATCTCGCAATTTAGCGGTTGAAAAAGCGGTATCTGAACTGCCAACATA
CTGCAGATACTGTGAAGATGAATTCCCACGAAACCAAATCCCTTTCCATG
AAAAAAGTAAATGTGACCAGAgacCAGCCTGCTGTGAATATAAGGGCTTA
GGTTGCACATGGGTAGGTGTTCATCACCAAGTGGAGTCTCATGTCAAGGA
CTGTTTGTTCCCACAGAAATGTGGAGCAGACCTTCTGGAGAATGTCAACA
TCATTGCTGCAGAATCTAACGAGGAATTGAGGCGTTATCAAGACCTCTTC
CAAATGTTATCGTATGAAAAAATCACTAATTGTGACATTCAACTATGCCC
AAGTCGCAGTGATGATTATATTCCCAAATTGTATTACGAGACAAACAAGT
TCACTGCTTTCGATCAGTTGTGGACAATCAAGGCCAAAGTTGTCGGCAAT
GAGAAAATTGCAGCACGTTCACTCTCATACCAATTAATATTAAAAGGAAA
AGGGAACCACGAAATAAAATACTTCCTGACGAAAGGACCCTTTGGAGATG
CAAAGATCTCACCTGAAACACAACGCTTCGAATTTCGCGATGACAACAAA
GAGTCAGACTATCATCACATCGCGCTGACAGAAGAGACCGATTGTAACCG
CCTGCTAGCCGCACGCACAATCAATTTCCGAATCATGATGTTTTTAGTCA
AGAAGTgaATGACAGAAGTGGCATCATTATTAAGAGAGTCTATTGGCAGT
GTATGTAAAGATGAAATCGATCTTACCCCTCCAGCTAAAAGGGTTAAAAT
GGAGAGTGAAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCTTGAGTCAA
GATTGATCAGTGTTCTTTCTTGTGTTATATGCTTTGATTTACCCTCTGGT
TCCATATATCAGTGTCTCCATGGACATTTGATGTGCATTGGATGTTTTAA
TCACCTCCTTGCTGATGCTAGGCTGAAAAATGAGCAAGCACAATGCCCAA
GCTGTAGAGCTGACATAAGTTCTAAGAACTCATCTCGCAATTTAGCGGTT
GAAAAAGCGGTATCTGAACTGCCAACATACTGCAGATACTGTGAAGATGA
ATTCCCACGAAACCAAATCCCTTTCCATGAAAAAAGTAAATGTGACCAGA
gacCAGCCTGCTGTGAATATAAGGGCTTAGGTTGCACATGGGTAGGTGTT
CATCACCAAGTGGAGTCTCATGTCAAGGACTGTTTGTTCCCACAGAAATG
TGGAGCAGACCTTCTGGAGAATGTCAACATCATTGCTGCAGAATCTAACG
AGGAATTGAGGCGTTATCAAGACCTCTTCCAAATGTTATCGTATGAAAAA
ATCACTAATTGTGACATTCAACTATGCCCAAGTCGCAGTGATGATTATAT
TCCCAAATTGTATTACGAGACAAACAAGTTCACTGCTTTCGATCAGTTGT
GGACAATCAAGGCCAAAGTTGTCGGCAATGAGAAAATTGCAGCACGTTCA
CTCTCATACCAATTAATATTAAAAGGAAAAGGGAACCACGAAATAAAATA
CTTCCTGACGAAAGGACCCTTTGGAGATGCAAAGATCTCACCTGAAACAC
AACGCTTCGAATTTCGCGATGACAACAAAGAGTCAGACTATCATCACATC
GCGCTGACAGAAGAGACCGATTGTAACCGCCTGCTAGCCGCACGCACAAT
CAATTTCCGAATCATGATGTTTTTAGTCAAGAAGTgaATGACAGAAGTGG
CATCATTATTAAGAGAGTCTATTGGCAGTGTATGTAAAGATGAAATCGAT
CTTACCCCTCCAGCTAAAAGGGTTAAAATGGAGAGTGAAGCTGAAAAAGT
GGACGAAAAAAGAGAACGTCTTGAGTCAAGATTGATCAGTGTTCTTTCTT
GTGTTATATGCTTTGATTTACCCTCTGGTTCCATATATCAGTGTCTCCAT
GGACATTTGATGTGCATTGGATGTTTTAATCACCTCCTTGCTGATGCTAG
GCTGAAAAATGAGCAAGCACAATGCCCAAGCTGTAGAGCTGACATAAGTT
CTAAGAACTCATCTCGCAATTTAGCGGTTGAAAAAGCGGTATCTGAACTG
CCAACATACTGCAGATACTGTGAAGATGAATTCCCACGAAACCAAATCCC
TTTCCATGAAAAAAGTAAATGTGACCAGAgacCAGCCTGCTGTGAATATA
AGGGCTTAGGTTGCACATGGGTAGGTGTTCATCACCAAGTGGAGTCTCAT
GTCAAGGACTGTTTGTTCCCACAGAAATGTGGAGCAGACCTTCTGGAGAA
TGTCAACATCATTGCTGCAGAATCTAACGAGGAATTGAGGCGTTATCAAG
ACCTCTTCCAAATGTTATCGTATGAAAAAATCACTAATTGTGACATTCAA
CTATGCCCAAGTCGCAGTGATGATTATATTCCCAAATTGTATTACGAGAC
AAACAAGTTCACTGCTTTCGATCAGTTGTGGACAATCAAGGCCAAAGTTG
TCGGCAATGAGAAAATTGCAGCACGTTCACTCTCATACCAATTAATATTA
AAAGGAAAAGGGAACCACGAAATAAAATACTTCCTGACGAAAGGACCCTT
TGGAGATGCAAAGATCTCACCTGAAACACAACGCTTCGAATTTCGCGATG
ACAACAAAGAGTCAGACTATCATCACATCGCGCTGACAGAAGAGACCGAT
TGTAACCGCCTGCTAGCCGCACGCACAATCAATTTCCGAATCATGATGTT
TTTAGTCAAGAAGTgaATGACAGAAGTGGCATCATTATTAAGAGAGTCTA
TTGGCAGTGTATGTAAAGATGAAATCGATCTTACCCCTCCAGCTAAAAGG
GTTAAAATGGAGAGTGAAGCTGAAAAAGTGGACGAAAAAAGAGAACGTCT
TGAGTCAAGATTGATCAGTGTTCTTTCTTGTGTTATATGCTTTGATTTAC
CCTCTGGTTCCATATATCAGTGTCTCCATGGACATTTGATGTGCATTGGA
TGTTTTAATCACCTCCTTGCTGATGCTAGGCTGAAAAATGAGCAAGCACA
ATGCCCAAGCTGTAGAGCTGACATAAGTTCTAAGAACTCATCTCGCAATT
TAGCGGTTGAAAAAGCGGTATCTGAACTGCCAACATACTGCAGATACTGT
GAAGATGAATTCCCACGAAACCAAATCCCTTTCCATGAAAAAAGTAAATG
TGACCAGAgacCAGCCTGCTGTGAATATAAGGGCTTAGGTTGCACATGGG
TAGGTGTTCATCACCAAGTGGAGTCTCATGTCAAGGACTGTTTGTTCCCA
CAGAAATGTGGAGCAGACCTTCTGGAGAATGTCAACATCATTGCTGCAGA
ATCTAACGAGGAATTGAGGCGTTATCAAGACCTCTTCCAAATGTTATCGT
ATGAAAAAATCACTAATTGTGACATTCAACTATGCCCAAGTCGCAGTGAT
GATTATATTCCCAAATTGTATTACGAGACAAACAAGTTCACTGCTTTCGA
TCAGTTGTGGACAATCAAGGCCAAAGTTGTCGGCAATGAGAAAATTGCAG
CACGTTCACTCTCATACCAATTAATATTAAAAGGAAAAGGGAACCACGAA
ATAAAATACTTCCTGACGAAAGGACCCTTTGGAGATGCAAAGATCTCACC
TGAAACACAACGCTTCGAATTTCGCGATGACAACAAAGAGTCAGACTATC
ATCACATCGCGCTGACAGAAGAGACCGATTGTAACCGCCTGCTAGCCGCA
CGCACAATCAATTTCCGAATCATGATGTTTTTAGTCAAGAAGTga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13342MSTRG.13342Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13342.1.p1MSTRG.13342.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13342.1.p1.exon1MSTRG.13342.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.1.p1.exon2MSTRG.13342.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.1.p1.exon3MSTRG.13342.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.1.p1.exon4MSTRG.13342.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13342.1.p1.exon5MSTRG.13342.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000105_pilongenomesc0000105_pilon:532368..536561 +