MSTRG.1333.1.p1 (mRNA) -

Overview
NameMSTRG.1333.1.p1
Unique NameMSTRG.1333.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1923375..1926925+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1333.1.p1 ID=MSTRG.1333.1.p1|Name=MSTRG.1333.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3551bp|location=Sequence derived from alignment at sc0000006_pilon:1923375..1926925+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAAACAAACATTATCTTCAAACAATATTTGTTTTAAAAGTACTTTATCC
AgctttttccatatttttgcAAATGCTACTTAGCTAAAAGCTTTAAAGAA
AGTAGTATATTGTTTATTTATCAAGAGGTCGAGTTTTACTGCTCAAACTT
GAAGTAGGCGTGTAAAAAGAATGATAGCATTGATCATAATCGCAGCAGTC
CCGGCATTATTCTTACTGTGGGTGTTAACCACTTATGTGGAACATGTAAT
CAGTCTGAGGAAATATCCAAAAGGACCATTCCCGCTTCCTTTAATTGGAA
ACTTGAATTTGATTGGTGGACAGAGGATACACCTTAATTTGTTGGAACTG
ACAAAGAAATATGGCAATGTTTACAGCATTAGCATGGGTATGTTCCTAaa
gttttaattatttatttcttaCTTTTGATTAATTAGCATGTAAGGATCCC
AGGAAAATTTAATCAAGCCATAATCTCTCCAAAGTTTTAAAAGCATGTCG
GTCAAATTTTCAACTCCTGAAGGCAAATAATGATATAATGAACAAAGGAT
GACCATTATTTTAATAGGTTTTAGGATTGAGGGAACTTATTTTTAAAGGA
ATTCTGAAAAGGAAAATTAGGGTTGAAATAGGCTGTCGACTTAGTCTGGC
CAGTTAGCTCGTAACTAGGTGTTTAATAATCTCACCAGGCAAGTACTAAc
ctactacatgttttttttataaacatataaaaatcagaaaacaggctcag
agatgcttaggtcgaaagcttaataaggctgaaaaatgcttgagggatgc
ttatatcgaaagcaaaaatttatactgaaattttattttttattcattct
ttATTTAAAGTTGGGTACACTAATAGAATTACATAAGTACATAAGTAAGT
CTAATCAAATCCAACTaaaagccttaaaaagccttagaaaaaagcctgaa
aagccttaaaattccagccaaaaaaatccaaaatcaggaaaaaaacaatt
ttcgtaGGCTCacgtaatgcttgccatatgcttaatttttccccatatct
gagcctagatatgcttacaagtgcaatgcttataaaaaaaaacatgtagt
gtgCTAGTAGCCTTGCAACGCCCATTTCTGatttctaaatttcaattaaa
agtaAAGCTTATGAAacagatgttttttttctcaaaattaagCTAAGAAG
AATCACAGTAACACTAAATCGACCACCTAAACCATAATTTGAACCTCTAT
TGACCTTGTTTCTTCAGGAATGCGACGTGTGGTTGTCGTCAATTCTTACG
AGAATGTTAAAGAAGGCTTGGTCACCAGAGGACACGATCTAGCTGGTCGT
CCACATTTGAGAGTCGGTTCAAAATATCACAGTAATAACTACAAAACCGT
TGGAGCAATGGATTACTCGAAGTCGTGGGCTTTCGTCAGGAAATTGGCAT
ACAAGAGCTTGCATTTATATGGAGAGGGGATGGTGAATATGGAGAGTTGT
GTAttggaaaatgttgaaaaattaagTGGAATCATTTCTAAAGAAGTTGG
ACAACCAGTCTTAATTCACCAGTATTTGGGTAAGTACATACACATGATGT
GTTAGAGCCGTATAGGCGACCTTAGTGCAAAATTTATACACTAAAATGTC
ACTTGTCATTGATCAAatgggcttttctagaaaaaattcgtgcaccccct
gttgaggaggtccatttccgttccaagggggtaaggtttgaaatgcagtg
gaattccataagggtagacgaaaatccgtcaagcggaattccaagggggt
aatgattgaaaatttgtaggGGGTAGGTCTCAAAAgattggacctcctca
acagggggtgcacggtttttttctggaaaagcccaatgtcaTTGACAAGA
CCCAGGAGGCCTTAAAGCTTTGTATCCACCAACCATTTTTATTTCTATAC
CTTTTTTAGGAAACATTTTGGTCAACACTATTTGCACCAGAGTCTTTAAT
ACCGATTATGAAATTGACGATCCTGAATTCCAAAACATCCTTGATTTCAC
ATTTGATATTGGAAAAGGATTAGGACTAGATGGCTGGACTATGATCTTCC
CATGGCTTGCAAATCTTCCAGCAAACACTAGTGAAGAACTTAGACATCTA
ATAGCAGCTGTCAAGAACCGAAACGCACATACACGAAAGAAGTTCGAAGA
ACACATCGCAACTTTCAATCCAGAGAAATTACGTGATATCTGTGACCAGC
TGTTATTTTTGTCACAGAATAAAGAACAATGGGAAGGTGCTGGATTCGAA
AAAGTCACACAAGAGCAACTAGAGGCTATAGTTCATAGCTACTTTTTTGC
CGGTATCGAAACAACTTTGACAACATTGCGTTGGTTTTTCTTATATTGTC
TCTACCACCCCGAGTATGAAACCAAGATGTATCAAGAGCTCGTAGACACC
TTTGGATTAAAGCATCGTTTGACGTATGGTGACTTGTCATCTCTTCCTTT
CACTCAAGCTATGATGAACGAAACCAACCGATGCGCTTCGATTCTAAGAA
TCAATTTACCGCACAAAGCTGAAGTTGATTCATCCATTGGAGGAAAGGCA
ATCCCAAAAGGTACACCAGTCATTTTTAATTTCCATAGCGTTCACTTTGA
TGGGAAATATTGGGAGAATCCAAACGAATTCAACCCGCATCGTTGGTTAA
ACACCGATGGAAgtttgaagaaagaaaaggtCACGCATTATTTACCTTTC
TCGGCCGGTACAAGAGTTTGTCTTGGTGAGAAAATGGCTAAAGTACAAAT
GTTCTTGATTGCAGCAAGCTTGGTACGAAGTTTCGAAGTGATGCGATATG
ATGGGGAGAAGTTACCGGCATTGGATGAACGTGGTCCGGGTAGTGGCCCG
TACACACCGGGTACTACCTACAAAGTCATTTTCAAGAAACGCTCAGAGGC
GTAATAGAAAGTGACTTTTTATGACATATTTGAACAGTTTTGAGGTTCTT
CCAATCTACTAAATAATTTCATATAGAGCTGTAATTATAATATAACAGCC
CTTCAAAGACTTTTCATTCTTCTTATATTCATATTCatgaaatttaaatt
aaaaagatacaATAGGGTGAAATTTGGTTAAAGGTTATGAATCGCTTCGT
AATTCAGAAATTGCAATAGAATCAGTTTTGTATGCACTTTTTTAAGCCTT
TCAgtgaagaaatattttaaaactaaaagttttgAGGGTGAGCCAAATTT
TACTCTAGTGTCTTATTCgtcactacacgttttttataagaacatttaag
tttttttcatttaagcctTTGATGTTCTAAacttcgaagccttatgttct
ttatttagtttgttcttataaaaaacgtgtattcttacATATTAATATTA
TTTTAGCTGAGATTTATATTTACATTTAATCATTCAAAACTCTCTCATCA
TCAttttttcaaggaaattttGGAGAACTGATGTTATTCTAGattataat
aatattcaaaCTAAAATGGGGGCTGAATTCTAAATTATTGTGTTAATTCG
G

Coding sequence (CDS) from alignment at sc0000006_pilon:1923375..1926925+

>MSTRG.1333.1.p1 ID=MSTRG.1333.1.p1|Name=MSTRG.1333.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4572bp|location=Sequence derived from alignment at sc0000006_pilon:1923375..1926925+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATAGCATTGATCATAATCGCAGCAGTCCCGGCATTATTCTTACTGTG
GGTGTTAACCACTTATGTGGAACATGTAATCAGTCTGAGGAAATATCCAA
AAGGACCATTCCCGCTTCCTTTAATTGGAAACTTGAATTTGATTGGTGGA
CAGAGGATACACCTTAATTTGTTGGAACTGACAAAGAAATATGGCAATGT
TTACAGCATTAGCATGGGAATGCGACGTGTGGTTGTCGTCAATTCTTACG
AGAATGTTAAAGAAGGCTTGGTCACCAGAGGACACGATCTAGCTGGTCGT
CCACATTTGAGAGTCGGTTCAAAATATCACAGTAATAACTACAAAACCGT
TGGAGCAATGGATTACTCGAAGTCGTGGGCTTTCGTCAGGAAATTGGCAT
ACAAGAGCTTGCATTTATATGGAGAGGGGATGGTGAATATGGAGAGTTGT
GTAttggaaaatgttgaaaaattaagTGGAATCATTTCTAAAGAAGTTGG
ACAACCAGTCTTAATTCACCAGTATTTGGGAAACATTTTGGTCAACACTA
TTTGCACCAGAGTCTTTAATACCGATTATGAAATTGACGATCCTGAATTC
CAAAACATCCTTGATTTCACATTTGATATTGGAAAAGGATTAGGACTAGA
TGGCTGGACTATGATCTTCCCATGGCTTGCAAATCTTCCAGCAAACACTA
GTGAAGAACTTAGACATCTAATAGCAGCTGTCAAGAACCGAAACGCACAT
ACACGAAAGAAGTTCGAAGAACACATCGCAACTTTCAATCCAGAGAAATT
ACGTGATATCTGTGACCAGCTGTTATTTTTGTCACAGAATAAAGAACAAT
GGGAAGGTGCTGGATTCGAAAAAGTCACACAAGAGCAACTAGAGGCTATA
GTTCATAGCTACTTTTTTGCCGGTATCGAAACAACTTTGACAACATTGCG
TTGGTTTTTCTTATATTGTCTCTACCACCCCGAGTATGAAACCAAGATGT
ATCAAGAGCTCGTAGACACCTTTGGATTAAAGCATCGTTTGACGTATGGT
GACTTGTCATCTCTTCCTTTCACTCAAGCTATGATGAACGAAACCAACCG
ATGCGCTTCGATTCTAAGAATCAATTTACCGCACAAAGCTGAAGTTGATT
CATCCATTGGAGGAAAGGCAATCCCAAAAGGTACACCAGTCATTTTTAAT
TTCCATAGCGTTCACTTTGATGGGAAATATTGGGAGAATCCAAACGAATT
CAACCCGCATCGTTGGTTAAACACCGATGGAAgtttgaagaaagaaaagg
tCACGCATTATTTACCTTTCTCGGCCGGTACAAGAGTTTGTCTTGGTGAG
AAAATGGCTAAAGTACAAATGTTCTTGATTGCAGCAAGCTTGGTACGAAG
TTTCGAAGTGATGCGATATGATGGGGAGAAGTTACCGGCATTGGATGAAC
GTGGTCCGGGTAGTGGCCCGTACACACCGGGTACTACCTACAAAGTCATT
TTCAAGAAACGCTCAGAGGCGTAAATGATAGCATTGATCATAATCGCAGC
AGTCCCGGCATTATTCTTACTGTGGGTGTTAACCACTTATGTGGAACATG
TAATCAGTCTGAGGAAATATCCAAAAGGACCATTCCCGCTTCCTTTAATT
GGAAACTTGAATTTGATTGGTGGACAGAGGATACACCTTAATTTGTTGGA
ACTGACAAAGAAATATGGCAATGTTTACAGCATTAGCATGGGAATGCGAC
GTGTGGTTGTCGTCAATTCTTACGAGAATGTTAAAGAAGGCTTGGTCACC
AGAGGACACGATCTAGCTGGTCGTCCACATTTGAGAGTCGGTTCAAAATA
TCACAGTAATAACTACAAAACCGTTGGAGCAATGGATTACTCGAAGTCGT
GGGCTTTCGTCAGGAAATTGGCATACAAGAGCTTGCATTTATATGGAGAG
GGGATGGTGAATATGGAGAGTTGTGTAttggaaaatgttgaaaaattaag
TGGAATCATTTCTAAAGAAGTTGGACAACCAGTCTTAATTCACCAGTATT
TGGGAAACATTTTGGTCAACACTATTTGCACCAGAGTCTTTAATACCGAT
TATGAAATTGACGATCCTGAATTCCAAAACATCCTTGATTTCACATTTGA
TATTGGAAAAGGATTAGGACTAGATGGCTGGACTATGATCTTCCCATGGC
TTGCAAATCTTCCAGCAAACACTAGTGAAGAACTTAGACATCTAATAGCA
GCTGTCAAGAACCGAAACGCACATACACGAAAGAAGTTCGAAGAACACAT
CGCAACTTTCAATCCAGAGAAATTACGTGATATCTGTGACCAGCTGTTAT
TTTTGTCACAGAATAAAGAACAATGGGAAGGTGCTGGATTCGAAAAAGTC
ACACAAGAGCAACTAGAGGCTATAGTTCATAGCTACTTTTTTGCCGGTAT
CGAAACAACTTTGACAACATTGCGTTGGTTTTTCTTATATTGTCTCTACC
ACCCCGAGTATGAAACCAAGATGTATCAAGAGCTCGTAGACACCTTTGGA
TTAAAGCATCGTTTGACGTATGGTGACTTGTCATCTCTTCCTTTCACTCA
AGCTATGATGAACGAAACCAACCGATGCGCTTCGATTCTAAGAATCAATT
TACCGCACAAAGCTGAAGTTGATTCATCCATTGGAGGAAAGGCAATCCCA
AAAGGTACACCAGTCATTTTTAATTTCCATAGCGTTCACTTTGATGGGAA
ATATTGGGAGAATCCAAACGAATTCAACCCGCATCGTTGGTTAAACACCG
ATGGAAgtttgaagaaagaaaaggtCACGCATTATTTACCTTTCTCGGCC
GGTACAAGAGTTTGTCTTGGTGAGAAAATGGCTAAAGTACAAATGTTCTT
GATTGCAGCAAGCTTGGTACGAAGTTTCGAAGTGATGCGATATGATGGGG
AGAAGTTACCGGCATTGGATGAACGTGGTCCGGGTAGTGGCCCGTACACA
CCGGGTACTACCTACAAAGTCATTTTCAAGAAACGCTCAGAGGCGTAAAT
GATAGCATTGATCATAATCGCAGCAGTCCCGGCATTATTCTTACTGTGGG
TGTTAACCACTTATGTGGAACATGTAATCAGTCTGAGGAAATATCCAAAA
GGACCATTCCCGCTTCCTTTAATTGGAAACTTGAATTTGATTGGTGGACA
GAGGATACACCTTAATTTGTTGGAACTGACAAAGAAATATGGCAATGTTT
ACAGCATTAGCATGGGAATGCGACGTGTGGTTGTCGTCAATTCTTACGAG
AATGTTAAAGAAGGCTTGGTCACCAGAGGACACGATCTAGCTGGTCGTCC
ACATTTGAGAGTCGGTTCAAAATATCACAGTAATAACTACAAAACCGTTG
GAGCAATGGATTACTCGAAGTCGTGGGCTTTCGTCAGGAAATTGGCATAC
AAGAGCTTGCATTTATATGGAGAGGGGATGGTGAATATGGAGAGTTGTGT
AttggaaaatgttgaaaaattaagTGGAATCATTTCTAAAGAAGTTGGAC
AACCAGTCTTAATTCACCAGTATTTGGGAAACATTTTGGTCAACACTATT
TGCACCAGAGTCTTTAATACCGATTATGAAATTGACGATCCTGAATTCCA
AAACATCCTTGATTTCACATTTGATATTGGAAAAGGATTAGGACTAGATG
GCTGGACTATGATCTTCCCATGGCTTGCAAATCTTCCAGCAAACACTAGT
GAAGAACTTAGACATCTAATAGCAGCTGTCAAGAACCGAAACGCACATAC
ACGAAAGAAGTTCGAAGAACACATCGCAACTTTCAATCCAGAGAAATTAC
GTGATATCTGTGACCAGCTGTTATTTTTGTCACAGAATAAAGAACAATGG
GAAGGTGCTGGATTCGAAAAAGTCACACAAGAGCAACTAGAGGCTATAGT
TCATAGCTACTTTTTTGCCGGTATCGAAACAACTTTGACAACATTGCGTT
GGTTTTTCTTATATTGTCTCTACCACCCCGAGTATGAAACCAAGATGTAT
CAAGAGCTCGTAGACACCTTTGGATTAAAGCATCGTTTGACGTATGGTGA
CTTGTCATCTCTTCCTTTCACTCAAGCTATGATGAACGAAACCAACCGAT
GCGCTTCGATTCTAAGAATCAATTTACCGCACAAAGCTGAAGTTGATTCA
TCCATTGGAGGAAAGGCAATCCCAAAAGGTACACCAGTCATTTTTAATTT
CCATAGCGTTCACTTTGATGGGAAATATTGGGAGAATCCAAACGAATTCA
ACCCGCATCGTTGGTTAAACACCGATGGAAgtttgaagaaagaaaaggtC
ACGCATTATTTACCTTTCTCGGCCGGTACAAGAGTTTGTCTTGGTGAGAA
AATGGCTAAAGTACAAATGTTCTTGATTGCAGCAAGCTTGGTACGAAGTT
TCGAAGTGATGCGATATGATGGGGAGAAGTTACCGGCATTGGATGAACGT
GGTCCGGGTAGTGGCCCGTACACACCGGGTACTACCTACAAAGTCATTTT
CAAGAAACGCTCAGAGGCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1333MSTRG.1333Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1333.1.p1MSTRG.1333.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1333.1.p1.exon1MSTRG.1333.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1333.1.p1.exon2MSTRG.1333.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1333.1.p1.exon3MSTRG.1333.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1923375..1926925 +