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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000104_pilon:899580..904916+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13290.1.p2 ID=MSTRG.13290.1.p2|Name=MSTRG.13290.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5337bp|location=Sequence derived from alignment at sc0000104_pilon:899580..904916+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGCGGGATTtctgatgttttgaaaaatagtcAGAAATCTAGTATCTTAT
CGGTTCCGGACGAATGTTCCGGCATGCGAATTATTGAGCATGCGCATAAA
AGGGGAGAAGTTATCACTCGTGTCATCTCGCATCAAACGTAAGGTCGCGT
TCCAAAATGGCAGAATCTGAAAGTCAAGAAGCTTCAACTcaacaactaac
tcaacaactGCAGAACGCCATCAGTGATTTATCAACTTTGAAAAGGGATA
CACAAGATGCTCTCAACCAATTCaaagaccatcagaaaacctcgattgaa
aaattcaataagaaattggaaagaaaaagaaaaatcgacCAAGTAATTTT
TAATAAACCAGGAAACGAAGAGCAGTACAAACATGCCAAACAAGTATTAG
AATCAATGGAGAATGTTGAAGAAGCTATCACCGAAAATCGTCTAGAGGAC
GCCAAAAAAGCATTAGAGGAGGGTAAGGAGCTTGTTAATTATCGAATGAA
AATTGTTAAGATAGCGGATAGGGAAGGATGGGGCTGCGTGAAGCATTTTA
TTGCTGACAATTTGGTTTCGGGAACAGAAGAGGAAAAGCGTCTCAAGAAA
GCTATAAaggactactctaaatcgaaatTAGAACACGCAAAAAATAGAGG
GAACTCTGacaataacaaaaaatttcgaCCTTATTCGTCATCAACATTTA
CACCATATCAAAACGATAGGAGCAATGAGAATTCTAATAGCTACAAAAGT
TCATATGTTTATCAAGGAGATTCACTCAGAAAGAAAATGGAAACGATTTA
TTGCTTTAATTGCAAGTCTGTTGGTCATTATTCTTTTCACTGTCCATTTC
TATCCTCCAGAGACAACAATCTTAAGATTCCAAACCTCGAAAAAGGAGAC
GGTAATTAGACGATCAAAACAGTCAATAACAAgttgtgttttttcttatg
acattttgagcttatatatatttgttatttgttttttgtgtgtgtttcac
atttGAAATCATATATCGAGTTATGTTTCATTTACTTTGTACACGTTCAG
AGAGATATTGGGAAATCGAAGAAAACGAACAAGCCTCGGTAGCAGGAAAG
ATTCAgaaatttgctaaattttggGAATCGGAGCTAGATGCACCACCTTT
TATTCTAGACATCGTCAAAACCGGCTACAGTCTTCCATTCATTACTACGC
CTCCCCCAGCCTACAGCAGAAACAACAAGTCCAGTAAGAGAGAGCACATA
TTCACTGAAAAATCGATTAAAgagcttttgaaaaataattgtataCAGGA
AGTCGATTACATTCCCCACTGTGTCAACCCCCTTTCAGTTGCAGAAAGAA
ATAATAAATTGAGGCTTGTTCTTGATCTTCGAAACGTTAATAAGTACATT
CAAGTGAATAAATTTAAATACGAAAATCTTAAGACGGCTTCCGATTTGAT
TGATTCTGATGATTTCATGATCACTTTCGACTTGAAGAGCGGTTATCACC
ACGTCCCAATTAACGCTAACTTTTATACGTATCTGGGTTTCTCATGGGAG
TTCGACGGCGTAACCAAATACTTCGTTTTTGTAGTGTTACCTTTCGGTTT
ATGTTCAGCATGTTGGGTCTTTACAAAGTTAATGCGTCAATTAGTGAAAA
AATGGAGAGGTCAAGGGATTAAGTCGATTATGTATCTTGATGACGGAATC
GCAGCTGGGTATCCGAAGTCGCTAATGATTGTACAACGTAATAGCATGGT
ATCCGATCTTATGTCCTCCGGTCTAACAATTAACATCAAGAAGTCTTCTT
TGGAGCctgaaatagaaaaagaatGGCTAGGCTTTACGATTAACACCAAC
GACATGCGTATGTACATCcctaataaaaaattaaaagctgTTTTGAGTTT
TTTAGATACTAttttgagattcgattacgtcaCCACAAGAAGTATCGCAA
AGTTTGCAGGGCGTATAATCGCCATGTCTATCGCCATAGGCCCTTTGACC
AGACTTTTTACGAGACAAATGTATAAATTCATTGACGATAAGAATTCGTT
AGGTTGTACATGGGATAGCTATCGCCCATTAACAACAGAAGTAAAATCGG
AACTTACCTTTTGGAAATCTAATCTATCAGCGGTGAACGGCTTAGAATTT
AAAACGTCTCCTGAAATTACTAAGATCTGCTATAGTGATGCAAGCCAATA
CGCATATGGAGGTTTtatagtcgaaaaattgaacAACGTCATAGCTCAAG
GTAATTTCTCTAACTTCGAAGCCAACACTAGTTCCACGTATAGAGAGCTT
TCTGCTGTAAAAAACGTTTTATCATCTCTTGCTCACAAGCTAAAAAATAA
CGCAGTTCAATGGAATTCTGATAACGAAAATGTAACAAGAATAATTAATG
CCGGCAGTACAAAAGAATATCTACAAAAGTTAGCAATTGACATTTATAAT
ATTAACGTTCGTAACAACATCAGGCTTTATCCTCAATGGATCCCTAGAGA
GAAAAATCAAATCGCTGACAGTATCTCAAAAAGCTTCGACACAGATAATT
GGTCTATTGATAACGAGACATTTAATTACATTCAAAACACTTATGGCGTT
TTTACAATAGATAGATTCGCTGACaataaaaacactaaaacaGAGAGATT
CAACTCAAAGAACTTTTGTCCAAATACAGAGGAGGTTAATGCATTCGTAA
GTCACTGGGGAAACGAGATAAATTGGCTATGTCCACCAACATATCTCATT
GGAAAAGCTATAAAACACTTAAAGTTGTGTAGAGCAAAAGGAGTGTTGTT
TGTACCGGTATGGAAGTCTTCTTACTTTTGGCCATTACTTACAAGAGACG
GTATAAACTTTGAAAGTTTTATCAAACATTTTCTAGTTTTGGATCCATTT
TATTTCAACTATTCTAGAACAAAATCTGTTTTTGAAGgctttgcaaaatt
ttatgctttGGCATTACTTATTGATTTTTCGGAATAAAAGACGAAATAAT
TACttaacaaaattaatttcttgTTTTATGTTCTACATGATGCCGAGAAA
CGAACGAAGCTACGGATATTGAACGGTATGAGGAACGAACGGACCACGAA
AATTGAGGACTACGAGGACCGGTGAACCAGAGATTGGTTTAGGCACATGC
CAGCCCACAGGTGTCATAGGTGCACAGTGAGGCATTACAATCATTGATTA
TATACGTATTGGCCAGTTCGCTGGTGTCAAAGGTACACAGTGAGGCAAGA
TGAACGATATCAACGGTTAGAGATTGAATCAGGTATGagagattaaaaat
tttattccCCCTTTTTCTTTCGTTACTTGTAGAATCCCTTATGttcggaa
tttggcgaaaattagATGACATCAAAGACAACAAGCTTAGATCAATCGCA
TCCTCCCTTCCAACCTTGGTTAAATCAGCATACGCCGATTCCACTTTGCA
AAAATACAAGCCTGCCTGGAATAAATGGATCTCCTGGGCCGCACAGTTTG
ACGAAATATGCCCCTGCCCGGCCACGCCTTTCTACGTTGCGGTTTACTTG
AACGACATAGTGTCCAATAACGGAAAAATTGGTACTCTAGACGTAGCTAT
TTCAGCAATAAGATGGGGTCATTTGAATTCGGGTTTAGAATCGCCTACAG
ATCATCCATTTGTAAAGTTAGCCTTAGAAGGAGGAAAAAGAATAATAGCA
AGAGGGGGAGGAAAAGTATCCAGACAAAAAGAGCCTTTGGATTCAGAGCT
TCTGAAACAAATTGTTGACGAATATGGCCAATCTAAGAACCTGATGGATC
TTCGTTTCGTTCTCATCTGCGTACTTGGATTTTCGGGTTTCATGAGAATT
AGCGAAATTTTGGCCCTAAAGATAAAGGATATTACTTTTGAGGATGAAGG
AATTAAGATTTTTATCGAGACTTCAAAAACGGATCAACTTAGGGAAGGTC
ACATCCTACACATTTCCAAAACTGATACAAAGTGTTGTCCAATCTACTGG
CTGAGGCATTATCTCTCAATTTCTAAgttggaaaaagaagaagaatcttT
CCTTATATGTCGTCTTGCCAAAACGAAAATAGGCCACAACGCAATCGGAA
AGTATAGCGTCTCTTATTCCACGGTATGGACCTGTTTTAAAAGCCACCTT
GCTAAGTTAGTTGATGAAAGAAAGTACGCCCTACATTCCTTAAGGTCAGG
TGGAGCCTCCGAAGCTGCAAATAACAATGTTTCTGAtagaatgatatcaa
aacaCGGAAGATGGAAATCAGATCAAACTAGAAATCGTTACATTAAAGAT
AATCCAAAGAAAAGGTTTTCCGTGTCAAAAAGCTTAGGAATTTAAAACAC
TGGACAGAAACTAACCTTGATTATTGTCAATCTCTTTATTTGAACACTAT
TCAGTTACTTTTTGTGTCTCGCGTTACGAAGATAGTCCAAATGTCTCCAG
AAATGACATGTGTCTACAATTTATTGTTTGAATCCTTTTGATAACTGATA
AGGAGGAAAAGTTAAGATGCGGGATTtctgatgttttgaaaaatagtcAG
AAATCTAGTATCTTATCGGTTCCGGACGAATGTTCCGGCATGCGAATTAT
TGAGCATGCGCATAAAAGGGGAGAAGTTATCACTCGTGTCATCTCGCATC
AAACGTAAGGTCGCGTTCTCTAACTTGAGCTACTTATGCTAATgattact
ttgttttttattcatgataaacttccaatacGACGGACGATGACAATCAT
CAACCAGCTGAAATGAAGAACGAGCAGATTTATTACTTATTATTAACATC
CCATGGTTTTTTGTCCTACCAAAAGATCAGTCAGATTGGCGAACAAGGCT
GACCCCTATAGCTCGAGGGAGGTAGGTTTTTAGTCCAGGGGAAGAGGCTC
ATTAGTTCAGGGGTCCTCTAAGTTATTTATAATTATTCAGAAGAATCAAA
GAACGGATcgacaaaccaataaagttATTAAAGAACCGTCACTCATCAAG
TCAAAGATACATCGGAGAATATCGTAATTATACTAAGAGAACTGAACTGG
AATACTGAGATGATACGAGATTCGTTAACGGATTAATAAAATCGAATAAT
CTCATGATACAACACACAGTACCAGAGGAACataaatatgaatgtatata
tatatacgactatttattattgtcaataacttattatatatttatcatta
ctttgtcaatttattaCTTGACTTGTATTTACCGACCTTGCGTTACGAAG
ATAGTCCAAATGTCTCCAGAAATGACATGTGTCTACAATTTATTGTTTGA
ATCCTTTTGATAACTGATAAGGAGGAAAAGTTAAGAT Coding sequence (CDS) from alignment at sc0000104_pilon:899580..904916+ >MSTRG.13290.1.p2 ID=MSTRG.13290.1.p2|Name=MSTRG.13290.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0000104_pilon:899580..904916+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGttcggaatttggcgaaaattagATGACATCAAAGACAACAAGCTTAG
ATCAATCGCATCCTCCCTTCCAACCTTGGTTAAATCAGCATACGCCGATT
CCACTTTGCAAAAATACAAGCCTGCCTGGAATAAATGGATCTCCTGGGCC
GCACAGTTTGACGAAATATGCCCCTGCCCGGCCACGCCTTTCTACGTTGC
GGTTTACTTGAACGACATAGTGTCCAATAACGGAAAAATTGGTACTCTAG
ACGTAGCTATTTCAGCAATAAGATGGGGTCATTTGAATTCGGGTTTAGAA
TCGCCTACAGATCATCCATTTGTAAAGTTAGCCTTAGAAGGAGGAAAAAG
AATAATAGCAAGAGGGGGAGGAAAAGTATCCAGACAAAAAGAGCCTTTGG
ATTCAGAGCTTCTGAAACAAATTGTTGACGAATATGGCCAATCTAAGAAC
CTGATGGATCTTCGTTTCGTTCTCATCTGCGTACTTGGATTTTCGGGTTT
CATGAGAATTAGCGAAATTTTGGCCCTAAAGATAAAGGATATTACTTTTG
AGGATGAAGGAATTAAGATTTTTATCGAGACTTCAAAAACGGATCAACTT
AGGGAAGGTCACATCCTACACATTTCCAAAACTGATACAAAGTGTTGTCC
AATCTACTGGCTGAGGCATTATCTCTCAATTTCTAAgttggaaaaagaag
aagaatcttTCCTTATATGTCGTCTTGCCAAAACGAAAATAGGCCACAAC
GCAATCGGAAAGTATAGCGTCTCTTATTCCACGGTATGGACCTGTTTTAA
AAGCCACCTTGCTAAGTTAGTTGATGAAAGAAAGTACGCCCTACATTCCT
TAAGGTCAGGTGGAGCCTCCGAAGCTGCAAATAACAATGTTTCTGAtaga
atgatatcaaaacaCGGAAGATGGAAATCAGATCAAACTAGAAATCGTTA
CATTAAAGATAATCCAAAGAAAAGGTTTTCCGTGTCAAAAAGCTTAGGAA
TTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104_pilon | genome | sc0000104_pilon:899580..904916 + |
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