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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000104_pilon:899580..904916+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13290.1.p1 ID=MSTRG.13290.1.p1|Name=MSTRG.13290.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5337bp|location=Sequence derived from alignment at sc0000104_pilon:899580..904916+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGCGGGATTtctgatgttttgaaaaatagtcAGAAATCTAGTATCTTAT
CGGTTCCGGACGAATGTTCCGGCATGCGAATTATTGAGCATGCGCATAAA
AGGGGAGAAGTTATCACTCGTGTCATCTCGCATCAAACGTAAGGTCGCGT
TCCAAAATGGCAGAATCTGAAAGTCAAGAAGCTTCAACTcaacaactaac
tcaacaactGCAGAACGCCATCAGTGATTTATCAACTTTGAAAAGGGATA
CACAAGATGCTCTCAACCAATTCaaagaccatcagaaaacctcgattgaa
aaattcaataagaaattggaaagaaaaagaaaaatcgacCAAGTAATTTT
TAATAAACCAGGAAACGAAGAGCAGTACAAACATGCCAAACAAGTATTAG
AATCAATGGAGAATGTTGAAGAAGCTATCACCGAAAATCGTCTAGAGGAC
GCCAAAAAAGCATTAGAGGAGGGTAAGGAGCTTGTTAATTATCGAATGAA
AATTGTTAAGATAGCGGATAGGGAAGGATGGGGCTGCGTGAAGCATTTTA
TTGCTGACAATTTGGTTTCGGGAACAGAAGAGGAAAAGCGTCTCAAGAAA
GCTATAAaggactactctaaatcgaaatTAGAACACGCAAAAAATAGAGG
GAACTCTGacaataacaaaaaatttcgaCCTTATTCGTCATCAACATTTA
CACCATATCAAAACGATAGGAGCAATGAGAATTCTAATAGCTACAAAAGT
TCATATGTTTATCAAGGAGATTCACTCAGAAAGAAAATGGAAACGATTTA
TTGCTTTAATTGCAAGTCTGTTGGTCATTATTCTTTTCACTGTCCATTTC
TATCCTCCAGAGACAACAATCTTAAGATTCCAAACCTCGAAAAAGGAGAC
GGTAATTAGACGATCAAAACAGTCAATAACAAgttgtgttttttcttatg
acattttgagcttatatatatttgttatttgttttttgtgtgtgtttcac
atttGAAATCATATATCGAGTTATGTTTCATTTACTTTGTACACGTTCAG
AGAGATATTGGGAAATCGAAGAAAACGAACAAGCCTCGGTAGCAGGAAAG
ATTCAgaaatttgctaaattttggGAATCGGAGCTAGATGCACCACCTTT
TATTCTAGACATCGTCAAAACCGGCTACAGTCTTCCATTCATTACTACGC
CTCCCCCAGCCTACAGCAGAAACAACAAGTCCAGTAAGAGAGAGCACATA
TTCACTGAAAAATCGATTAAAgagcttttgaaaaataattgtataCAGGA
AGTCGATTACATTCCCCACTGTGTCAACCCCCTTTCAGTTGCAGAAAGAA
ATAATAAATTGAGGCTTGTTCTTGATCTTCGAAACGTTAATAAGTACATT
CAAGTGAATAAATTTAAATACGAAAATCTTAAGACGGCTTCCGATTTGAT
TGATTCTGATGATTTCATGATCACTTTCGACTTGAAGAGCGGTTATCACC
ACGTCCCAATTAACGCTAACTTTTATACGTATCTGGGTTTCTCATGGGAG
TTCGACGGCGTAACCAAATACTTCGTTTTTGTAGTGTTACCTTTCGGTTT
ATGTTCAGCATGTTGGGTCTTTACAAAGTTAATGCGTCAATTAGTGAAAA
AATGGAGAGGTCAAGGGATTAAGTCGATTATGTATCTTGATGACGGAATC
GCAGCTGGGTATCCGAAGTCGCTAATGATTGTACAACGTAATAGCATGGT
ATCCGATCTTATGTCCTCCGGTCTAACAATTAACATCAAGAAGTCTTCTT
TGGAGCctgaaatagaaaaagaatGGCTAGGCTTTACGATTAACACCAAC
GACATGCGTATGTACATCcctaataaaaaattaaaagctgTTTTGAGTTT
TTTAGATACTAttttgagattcgattacgtcaCCACAAGAAGTATCGCAA
AGTTTGCAGGGCGTATAATCGCCATGTCTATCGCCATAGGCCCTTTGACC
AGACTTTTTACGAGACAAATGTATAAATTCATTGACGATAAGAATTCGTT
AGGTTGTACATGGGATAGCTATCGCCCATTAACAACAGAAGTAAAATCGG
AACTTACCTTTTGGAAATCTAATCTATCAGCGGTGAACGGCTTAGAATTT
AAAACGTCTCCTGAAATTACTAAGATCTGCTATAGTGATGCAAGCCAATA
CGCATATGGAGGTTTtatagtcgaaaaattgaacAACGTCATAGCTCAAG
GTAATTTCTCTAACTTCGAAGCCAACACTAGTTCCACGTATAGAGAGCTT
TCTGCTGTAAAAAACGTTTTATCATCTCTTGCTCACAAGCTAAAAAATAA
CGCAGTTCAATGGAATTCTGATAACGAAAATGTAACAAGAATAATTAATG
CCGGCAGTACAAAAGAATATCTACAAAAGTTAGCAATTGACATTTATAAT
ATTAACGTTCGTAACAACATCAGGCTTTATCCTCAATGGATCCCTAGAGA
GAAAAATCAAATCGCTGACAGTATCTCAAAAAGCTTCGACACAGATAATT
GGTCTATTGATAACGAGACATTTAATTACATTCAAAACACTTATGGCGTT
TTTACAATAGATAGATTCGCTGACaataaaaacactaaaacaGAGAGATT
CAACTCAAAGAACTTTTGTCCAAATACAGAGGAGGTTAATGCATTCGTAA
GTCACTGGGGAAACGAGATAAATTGGCTATGTCCACCAACATATCTCATT
GGAAAAGCTATAAAACACTTAAAGTTGTGTAGAGCAAAAGGAGTGTTGTT
TGTACCGGTATGGAAGTCTTCTTACTTTTGGCCATTACTTACAAGAGACG
GTATAAACTTTGAAAGTTTTATCAAACATTTTCTAGTTTTGGATCCATTT
TATTTCAACTATTCTAGAACAAAATCTGTTTTTGAAGgctttgcaaaatt
ttatgctttGGCATTACTTATTGATTTTTCGGAATAAAAGACGAAATAAT
TACttaacaaaattaatttcttgTTTTATGTTCTACATGATGCCGAGAAA
CGAACGAAGCTACGGATATTGAACGGTATGAGGAACGAACGGACCACGAA
AATTGAGGACTACGAGGACCGGTGAACCAGAGATTGGTTTAGGCACATGC
CAGCCCACAGGTGTCATAGGTGCACAGTGAGGCATTACAATCATTGATTA
TATACGTATTGGCCAGTTCGCTGGTGTCAAAGGTACACAGTGAGGCAAGA
TGAACGATATCAACGGTTAGAGATTGAATCAGGTATGagagattaaaaat
tttattccCCCTTTTTCTTTCGTTACTTGTAGAATCCCTTATGttcggaa
tttggcgaaaattagATGACATCAAAGACAACAAGCTTAGATCAATCGCA
TCCTCCCTTCCAACCTTGGTTAAATCAGCATACGCCGATTCCACTTTGCA
AAAATACAAGCCTGCCTGGAATAAATGGATCTCCTGGGCCGCACAGTTTG
ACGAAATATGCCCCTGCCCGGCCACGCCTTTCTACGTTGCGGTTTACTTG
AACGACATAGTGTCCAATAACGGAAAAATTGGTACTCTAGACGTAGCTAT
TTCAGCAATAAGATGGGGTCATTTGAATTCGGGTTTAGAATCGCCTACAG
ATCATCCATTTGTAAAGTTAGCCTTAGAAGGAGGAAAAAGAATAATAGCA
AGAGGGGGAGGAAAAGTATCCAGACAAAAAGAGCCTTTGGATTCAGAGCT
TCTGAAACAAATTGTTGACGAATATGGCCAATCTAAGAACCTGATGGATC
TTCGTTTCGTTCTCATCTGCGTACTTGGATTTTCGGGTTTCATGAGAATT
AGCGAAATTTTGGCCCTAAAGATAAAGGATATTACTTTTGAGGATGAAGG
AATTAAGATTTTTATCGAGACTTCAAAAACGGATCAACTTAGGGAAGGTC
ACATCCTACACATTTCCAAAACTGATACAAAGTGTTGTCCAATCTACTGG
CTGAGGCATTATCTCTCAATTTCTAAgttggaaaaagaagaagaatcttT
CCTTATATGTCGTCTTGCCAAAACGAAAATAGGCCACAACGCAATCGGAA
AGTATAGCGTCTCTTATTCCACGGTATGGACCTGTTTTAAAAGCCACCTT
GCTAAGTTAGTTGATGAAAGAAAGTACGCCCTACATTCCTTAAGGTCAGG
TGGAGCCTCCGAAGCTGCAAATAACAATGTTTCTGAtagaatgatatcaa
aacaCGGAAGATGGAAATCAGATCAAACTAGAAATCGTTACATTAAAGAT
AATCCAAAGAAAAGGTTTTCCGTGTCAAAAAGCTTAGGAATTTAAAACAC
TGGACAGAAACTAACCTTGATTATTGTCAATCTCTTTATTTGAACACTAT
TCAGTTACTTTTTGTGTCTCGCGTTACGAAGATAGTCCAAATGTCTCCAG
AAATGACATGTGTCTACAATTTATTGTTTGAATCCTTTTGATAACTGATA
AGGAGGAAAAGTTAAGATGCGGGATTtctgatgttttgaaaaatagtcAG
AAATCTAGTATCTTATCGGTTCCGGACGAATGTTCCGGCATGCGAATTAT
TGAGCATGCGCATAAAAGGGGAGAAGTTATCACTCGTGTCATCTCGCATC
AAACGTAAGGTCGCGTTCTCTAACTTGAGCTACTTATGCTAATgattact
ttgttttttattcatgataaacttccaatacGACGGACGATGACAATCAT
CAACCAGCTGAAATGAAGAACGAGCAGATTTATTACTTATTATTAACATC
CCATGGTTTTTTGTCCTACCAAAAGATCAGTCAGATTGGCGAACAAGGCT
GACCCCTATAGCTCGAGGGAGGTAGGTTTTTAGTCCAGGGGAAGAGGCTC
ATTAGTTCAGGGGTCCTCTAAGTTATTTATAATTATTCAGAAGAATCAAA
GAACGGATcgacaaaccaataaagttATTAAAGAACCGTCACTCATCAAG
TCAAAGATACATCGGAGAATATCGTAATTATACTAAGAGAACTGAACTGG
AATACTGAGATGATACGAGATTCGTTAACGGATTAATAAAATCGAATAAT
CTCATGATACAACACACAGTACCAGAGGAACataaatatgaatgtatata
tatatacgactatttattattgtcaataacttattatatatttatcatta
ctttgtcaatttattaCTTGACTTGTATTTACCGACCTTGCGTTACGAAG
ATAGTCCAAATGTCTCCAGAAATGACATGTGTCTACAATTTATTGTTTGA
ATCCTTTTGATAACTGATAAGGAGGAAAAGTTAAGAT Coding sequence (CDS) from alignment at sc0000104_pilon:899580..904916+ >MSTRG.13290.1.p1 ID=MSTRG.13290.1.p1|Name=MSTRG.13290.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4506bp|location=Sequence derived from alignment at sc0000104_pilon:899580..904916+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGAATCTGAAAGTCAAGAAGCTTCAACTcaacaactaactcaaca
actGCAGAACGCCATCAGTGATTTATCAACTTTGAAAAGGGATACACAAG
ATGCTCTCAACCAATTCaaagaccatcagaaaacctcgattgaaaaattc
aataagaaattggaaagaaaaagaaaaatcgacCAAGTAATTTTTAATAA
ACCAGGAAACGAAGAGCAGTACAAACATGCCAAACAAGTATTAGAATCAA
TGGAGAATGTTGAAGAAGCTATCACCGAAAATCGTCTAGAGGACGCCAAA
AAAGCATTAGAGGAGGAGAGATATTGGGAAATCGAAGAAAACGAACAAGC
CTCGGTAGCAGGAAAGATTCAgaaatttgctaaattttggGAATCGGAGC
TAGATGCACCACCTTTTATTCTAGACATCGTCAAAACCGGCTACAGTCTT
CCATTCATTACTACGCCTCCCCCAGCCTACAGCAGAAACAACAAGTCCAG
TAAGAGAGAGCACATATTCACTGAAAAATCGATTAAAgagcttttgaaaa
ataattgtataCAGGAAGTCGATTACATTCCCCACTGTGTCAACCCCCTT
TCAGTTGCAGAAAGAAATAATAAATTGAGGCTTGTTCTTGATCTTCGAAA
CGTTAATAAGTACATTCAAGTGAATAAATTTAAATACGAAAATCTTAAGA
CGGCTTCCGATTTGATTGATTCTGATGATTTCATGATCACTTTCGACTTG
AAGAGCGGTTATCACCACGTCCCAATTAACGCTAACTTTTATACGTATCT
GGGTTTCTCATGGGAGTTCGACGGCGTAACCAAATACTTCGTTTTTGTAG
TGTTACCTTTCGGTTTATGTTCAGCATGTTGGGTCTTTACAAAGTTAATG
CGTCAATTAGTGAAAAAATGGAGAGGTCAAGGGATTAAGTCGATTATGTA
TCTTGATGACGGAATCGCAGCTGGGTATCCGAAGTCGCTAATGATTGTAC
AACGTAATAGCATGGTATCCGATCTTATGTCCTCCGGTCTAACAATTAAC
ATCAAGAAGTCTTCTTTGGAGCctgaaatagaaaaagaatGGCTAGGCTT
TACGATTAACACCAACGACATGCGTATGTACATCcctaataaaaaattaa
aagctgTTTTGAGTTTTTTAGATACTAttttgagattcgattacgtcaCC
ACAAGAAGTATCGCAAAGTTTGCAGGGCGTATAATCGCCATGTCTATCGC
CATAGGCCCTTTGACCAGACTTTTTACGAGACAAATGTATAAATTCATTG
ACGATAAGAATTCGTTAGGTTGTACATGGGATAGCTATCGCCCATTAACA
ACAGAAGTAAAATCGGAACTTACCTTTTGGAAATCTAATCTATCAGCGGT
GAACGGCTTAGAATTTAAAACGTCTCCTGAAATTACTAAGATCTGCTATA
GTGATGCAAGCCAATACGCATATGGAGGTTTtatagtcgaaaaattgaac
AACGTCATAGCTCAAGGTAATTTCTCTAACTTCGAAGCCAACACTAGTTC
CACGTATAGAGAGCTTTCTGCTGTAAAAAACGTTTTATCATCTCTTGCTC
ACAAGCTAAAAAATAACGCAGTTCAATGGAATTCTGATAACGAAAATGTA
ACAAGAATAATTAATGCCGGCAGTACAAAAGAATATCTACAAAAGTTAGC
AATTGACATTTATAATATTAACGTTCGTAACAACATCAGGCTTTATCCTC
AATGGATCCCTAGAGAGAAAAATCAAATCGCTGACAGTATCTCAAAAAGC
TTCGACACAGATAATTGGTCTATTGATAACGAGACATTTAATTACATTCA
AAACACTTATGGCGTTTTTACAATAGATAGATTCGCTGACaataaaaaca
ctaaaacaGAGAGATTCAACTCAAAGAACTTTTGTCCAAATACAGAGGAG
GTTAATGCATTCGTAAGTCACTGGGGAAACGAGATAAATTGGCTATGTCC
ACCAACATATCTCATTGGAAAAGCTATAAAACACTTAAAGTTGTGTAGAG
CAAAAGGAGTGTTGTTTGTACCGGTATGGAAGTCTTCTTACTTTTGGCCA
TTACTTACAAGAGACGGTATAAACTTTGAAAGTTTTATCAAACATTTTCT
AGTTTTGGATCCATTTTATTTCAACTATTCTAGAACAAAATCTGTTTTTG
AAGgctttgcaaaattttatgctttGGCATTACTTATTGATTTTTCGGAA
TAAATGGCAGAATCTGAAAGTCAAGAAGCTTCAACTcaacaactaactca
acaactGCAGAACGCCATCAGTGATTTATCAACTTTGAAAAGGGATACAC
AAGATGCTCTCAACCAATTCaaagaccatcagaaaacctcgattgaaaaa
ttcaataagaaattggaaagaaaaagaaaaatcgacCAAGTAATTTTTAA
TAAACCAGGAAACGAAGAGCAGTACAAACATGCCAAACAAGTATTAGAAT
CAATGGAGAATGTTGAAGAAGCTATCACCGAAAATCGTCTAGAGGACGCC
AAAAAAGCATTAGAGGAGGAGAGATATTGGGAAATCGAAGAAAACGAACA
AGCCTCGGTAGCAGGAAAGATTCAgaaatttgctaaattttggGAATCGG
AGCTAGATGCACCACCTTTTATTCTAGACATCGTCAAAACCGGCTACAGT
CTTCCATTCATTACTACGCCTCCCCCAGCCTACAGCAGAAACAACAAGTC
CAGTAAGAGAGAGCACATATTCACTGAAAAATCGATTAAAgagcttttga
aaaataattgtataCAGGAAGTCGATTACATTCCCCACTGTGTCAACCCC
CTTTCAGTTGCAGAAAGAAATAATAAATTGAGGCTTGTTCTTGATCTTCG
AAACGTTAATAAGTACATTCAAGTGAATAAATTTAAATACGAAAATCTTA
AGACGGCTTCCGATTTGATTGATTCTGATGATTTCATGATCACTTTCGAC
TTGAAGAGCGGTTATCACCACGTCCCAATTAACGCTAACTTTTATACGTA
TCTGGGTTTCTCATGGGAGTTCGACGGCGTAACCAAATACTTCGTTTTTG
TAGTGTTACCTTTCGGTTTATGTTCAGCATGTTGGGTCTTTACAAAGTTA
ATGCGTCAATTAGTGAAAAAATGGAGAGGTCAAGGGATTAAGTCGATTAT
GTATCTTGATGACGGAATCGCAGCTGGGTATCCGAAGTCGCTAATGATTG
TACAACGTAATAGCATGGTATCCGATCTTATGTCCTCCGGTCTAACAATT
AACATCAAGAAGTCTTCTTTGGAGCctgaaatagaaaaagaatGGCTAGG
CTTTACGATTAACACCAACGACATGCGTATGTACATCcctaataaaaaat
taaaagctgTTTTGAGTTTTTTAGATACTAttttgagattcgattacgtc
aCCACAAGAAGTATCGCAAAGTTTGCAGGGCGTATAATCGCCATGTCTAT
CGCCATAGGCCCTTTGACCAGACTTTTTACGAGACAAATGTATAAATTCA
TTGACGATAAGAATTCGTTAGGTTGTACATGGGATAGCTATCGCCCATTA
ACAACAGAAGTAAAATCGGAACTTACCTTTTGGAAATCTAATCTATCAGC
GGTGAACGGCTTAGAATTTAAAACGTCTCCTGAAATTACTAAGATCTGCT
ATAGTGATGCAAGCCAATACGCATATGGAGGTTTtatagtcgaaaaattg
aacAACGTCATAGCTCAAGGTAATTTCTCTAACTTCGAAGCCAACACTAG
TTCCACGTATAGAGAGCTTTCTGCTGTAAAAAACGTTTTATCATCTCTTG
CTCACAAGCTAAAAAATAACGCAGTTCAATGGAATTCTGATAACGAAAAT
GTAACAAGAATAATTAATGCCGGCAGTACAAAAGAATATCTACAAAAGTT
AGCAATTGACATTTATAATATTAACGTTCGTAACAACATCAGGCTTTATC
CTCAATGGATCCCTAGAGAGAAAAATCAAATCGCTGACAGTATCTCAAAA
AGCTTCGACACAGATAATTGGTCTATTGATAACGAGACATTTAATTACAT
TCAAAACACTTATGGCGTTTTTACAATAGATAGATTCGCTGACaataaaa
acactaaaacaGAGAGATTCAACTCAAAGAACTTTTGTCCAAATACAGAG
GAGGTTAATGCATTCGTAAGTCACTGGGGAAACGAGATAAATTGGCTATG
TCCACCAACATATCTCATTGGAAAAGCTATAAAACACTTAAAGTTGTGTA
GAGCAAAAGGAGTGTTGTTTGTACCGGTATGGAAGTCTTCTTACTTTTGG
CCATTACTTACAAGAGACGGTATAAACTTTGAAAGTTTTATCAAACATTT
TCTAGTTTTGGATCCATTTTATTTCAACTATTCTAGAACAAAATCTGTTT
TTGAAGgctttgcaaaattttatgctttGGCATTACTTATTGATTTTTCG
GAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104_pilon | genome | sc0000104_pilon:899580..904916 + |
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