MSTRG.13274.1.p1 (mRNA) -

Overview
NameMSTRG.13274.1.p1
Unique NameMSTRG.13274.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:666869..670339+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13274.1.p1 ID=MSTRG.13274.1.p1|Name=MSTRG.13274.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3471bp|location=Sequence derived from alignment at sc0000104_pilon:666869..670339+ (Clytia hemisphaerica_ch_hm2_pilon)
AATAGCTGTTCCCAATATCATCATTAATAAATCGCATCTGAGTATGATTG
ACGATAAGAAAGCAGCGTAGTTGTTGAAGAAGGAGGACTTGAATCAGCGT
TCAAGGCAAGGTCTGACAGTGAGTTCATATTCTATCTTGAAGTTTATCTT
TGTTAGAGGTTGTTATACCGTTAAATTTGTGTTGAACCATGTCTTCAGAA
AGTGAATTAGTTGATATGGCCAAATTGGCTGAACAAGCCGAAAGGTATGA
TGATATGGTGCAATTTATGACCCAACTTACAGAGAAGAACCAAATTCTCA
CTGATGAACAGAGAAATTTACTCTCTGTCGCATTTAAAAATGTTGTTGGA
GCTAGACGATCAGCATGGAGAATCATCAGCAGCATGGAGCAACGATGCAT
AGAAAAAGGGGAAGGAAATCAAGCCGAATTAGCaaaaaaaTACAGGGAAG
AAATTGAGAAAGAATTAGAGGTAAAATCTCAATACTAACCTATTTCAGAT
TTATTATCCCtttttttCACTTGTCCTTGTTACTGTCAACTTTAAGATTT
ATTGAGCCTTACAACAAGAAAGACCAACACTTCTATTGTTTTGTTTCAGA
GAAAGATTTCTTGACATGTTCTAGTTCTGTATTTTTCTTGATATACAAAA
AGCTATTGTGGATTGACATGACTGTATAATTTTCTCCTCGATTTCAATGG
AAACCAAATAGGTTATATTAATCATTTTTGTCTGTAGCAGGACTGACTGG
GCTGGAGGCCTTGTTAGCAATAACAGTTATGAACCCAACAGATGTCTTGT
GGTGCTCCAGTCTAGCTAGAAATATACTTTAATGgagaattaattatttt
tctaacaTTGAATTAAAGAAAGTAAATGTAACTGAATTATCATCTTGTTT
TAGTAAGGGGTCACTCGCATATCGATTTTTCCTGTAACTAACATCATTGT
GACGCAAgggggtggggggTCAGAGCCtatgacgctaagaaatttcaaca
GAATATCGATTTTCAAACCTGTAACATTTTGTATTCCATCCTTCGCTACA
CCTGCCATCTTAATTCAAACGCATAAAATATAACAGAGATGATATCCAAT
ACCCTTCCGTTACGTTTGTAGGAATATGTTATTATCGATCCCTAATCATA
AAAACAGATACCGCAATAAGAAATAGATGGGCCGTATTTTGATATACAAG
GGATATACAAGGACCGCGCTGACAAAACAACGAGCCGTTTGTCTGGGGAC
AAACAATTGTGAAAATCATAAGTCAAAACCACTTGTTTTAAAACCGTGCG
AAACGAAGCACAAAAATCAATGTGGCTGGAATATCAATATCTGTaataga
gaagaaaaattactttcatcgatttttggtatatttatGTAAATGACGCT
AAGaaaggggggtgggggggggttcTTCAGATAGCATCACAATGACGTTA
GTTGCAGGAAAAATCGATATGCGAGTGACCCCTAAGAGACTCGTTTATGC
TGTTATAAAACTATGTTTCAGCAATTTTGGTTAAAAGTTCTTTATAGAAA
ATAATGTTTACAAAAACTATAGGAAATAGGGTTTCAGAAGTGAATTGTTG
AAATAAGGCCTCCAAAAATATAGAACAAAGTTTTGATTTCCCCTTAGATG
GTTTAAAGAAAAATGTccataaatattgaaaaaaattttaacagtaatgc
ggcaatcacaaatatcttcattttgtgtctaaaaagtgagttggtCGGTC
AGTCTTTCGGGTTCTCTTAcctccatcatccatttttggagtgaaTTCTT
GAAGAAAGCTGCTAGCCAGCAGCCAAAATAATGTCATGGGTGGTTTCAAT
ATATGACCTTTGAGCGCTGTGATCTCcaacagtgctgcaaataacagCTG
GTGACgggtaattaccggtcattttTAAGCTAATATGTGTGtttttttCC
TGTGAAATTTTGATGGTTTCATTATTAGTGCTTTCTGATCGAGTAATCAC
CAGCCAactttaaattccttatttgcaTCACTACTACaacccaaaatggc
gcatgaaATTTTTGGACGAAAGAAatgtcattgacagaaaaagtctgACA
ACTTTACCAACTCAAcgactcaattttcgagagttgGCCAGGCGATGCAA
AACAAAGCTATATTTGTGATTGACGCCTAATAAAAacttatgaatttttt
taaataagatccTGTCGTTTCATGATAATGATGATGTAACAAGAATATTG
TTTgctttaaattaaagaaatgaCTTAAAAGATTCTCTTACTTTTCTCTT
TCAGGCTCGTTGTCAAGAGGTCTTGAAACTTATCGATGATTCATTATTGA
AAACTGTCGACCAAGGAGAACGCCCAGATGAAGCTAAAGTATTCTACCTT
AAAATGAAAGGAGATTATTACAGATACTTGGTCGAAGTAAAAGACACATC
AAACCCAGAACGTGCGAAACTCGCAGAGCAATCAAAAGAAGCATACGGCA
ATGCCACAGAGGCTGCAGAGGGTCTTACAAACACTCATCCAATCAAATTG
GGATTGGCATTAAATTATTCTGTATTCCATTACGAGATTATGAATGACGG
TACCAAAGCCTGTGAATTGGCAAAGAAAGCATTTGATGATGCTATTGCTG
AATTAGATAGCTTGAAGGAAGATTCTTACAAGGATAGTACCTTAATTATG
CAGCTACTTAGAGACAATTTGACCTTGTGGACATCAGAGAATAACAAAGA
TGATGATCAAGACGAGTCGTGAGTCCGCCTTCATTTACATGTCTGACTAT
AAACACCAACAATCACCCAGAAGCTCATTCAACTTTTgatgatattttac
aaacacaCCACACCACATCAATTATAATGTGGCTAAGACTTTTGAACTTG
TAATTTATCATTTTGCAATGATATCTTCGATCAACTCCATGAAGGATTTA
CGCTGTTTTCTGATTATGATAGAAtgcaatcaaattttgttatatGTATA
ATTTTGTGCTTTTAGTAGTTTTTATGTGCATCTTTTCACATTGTGCTCAA
AAGCACAACTTTTCTCTGTCCCTGGCTGTCCCTagctttttctaaaatta
atccAATAATAGATGTTGTCTGGAATCTAATGACATTATTAGTTTTGTAA
TTTATTGTTTGATAAATAAGTATACTGAaatttagtgaatttttaaGTCC
CAAGCCATTACTGGTGGTTGCTTGTATTTATATTATGTATACAAAACACA
AACGGGTTGGTCGGTCCAAGCTATTGCTTTTAGTACAAACATCTATGCAG
ATAATGTATAtgttaaaatgtaaaaatacagTTTCATCCAAGATGTCTCT
CCTGTTTAATTTCATCTTGTTTCATTCAGTCGCTTGTGACTTTATACTTG
GGTTAATTAAtatatcaattttgaaaaaatagaggCTTAAACGTAAAATT
AATGTCAACACTCATTTGTCC

Coding sequence (CDS) from alignment at sc0000104_pilon:666869..670339+

>MSTRG.13274.1.p1 ID=MSTRG.13274.1.p1|Name=MSTRG.13274.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000104_pilon:666869..670339+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTTCAGAAAGTGAATTAGTTGATATGGCCAAATTGGCTGAACAAGC
CGAAAGGTATGATGATATGGTGCAATTTATGACCCAACTTACAGAGAAGA
ACCAAATTCTCACTGATGAACAGAGAAATTTACTCTCTGTCGCATTTAAA
AATGTTGTTGGAGCTAGACGATCAGCATGGAGAATCATCAGCAGCATGGA
GCAACGATGCATAGAAAAAGGGGAAGGAAATCAAGCCGAATTAGCaaaaa
aaTACAGGGAAGAAATTGAGAAAGAATTAGAGGCTCGTTGTCAAGAGGTC
TTGAAACTTATCGATGATTCATTATTGAAAACTGTCGACCAAGGAGAACG
CCCAGATGAAGCTAAAGTATTCTACCTTAAAATGAAAGGAGATTATTACA
GATACTTGGTCGAAGTAAAAGACACATCAAACCCAGAACGTGCGAAACTC
GCAGAGCAATCAAAAGAAGCATACGGCAATGCCACAGAGGCTGCAGAGGG
TCTTACAAACACTCATCCAATCAAATTGGGATTGGCATTAAATTATTCTG
TATTCCATTACGAGATTATGAATGACGGTACCAAAGCCTGTGAATTGGCA
AAGAAAGCATTTGATGATGCTATTGCTGAATTAGATAGCTTGAAGGAAGA
TTCTTACAAGGATAGTACCTTAATTATGCAGCTACTTAGAGACAATTTGA
CCTTGTGGACATCAGAGAATAACAAAGATGATGATCAAGACGAGTCGTGA
ATGTCTTCAGAAAGTGAATTAGTTGATATGGCCAAATTGGCTGAACAAGC
CGAAAGGTATGATGATATGGTGCAATTTATGACCCAACTTACAGAGAAGA
ACCAAATTCTCACTGATGAACAGAGAAATTTACTCTCTGTCGCATTTAAA
AATGTTGTTGGAGCTAGACGATCAGCATGGAGAATCATCAGCAGCATGGA
GCAACGATGCATAGAAAAAGGGGAAGGAAATCAAGCCGAATTAGCaaaaa
aaTACAGGGAAGAAATTGAGAAAGAATTAGAGGCTCGTTGTCAAGAGGTC
TTGAAACTTATCGATGATTCATTATTGAAAACTGTCGACCAAGGAGAACG
CCCAGATGAAGCTAAAGTATTCTACCTTAAAATGAAAGGAGATTATTACA
GATACTTGGTCGAAGTAAAAGACACATCAAACCCAGAACGTGCGAAACTC
GCAGAGCAATCAAAAGAAGCATACGGCAATGCCACAGAGGCTGCAGAGGG
TCTTACAAACACTCATCCAATCAAATTGGGATTGGCATTAAATTATTCTG
TATTCCATTACGAGATTATGAATGACGGTACCAAAGCCTGTGAATTGGCA
AAGAAAGCATTTGATGATGCTATTGCTGAATTAGATAGCTTGAAGGAAGA
TTCTTACAAGGATAGTACCTTAATTATGCAGCTACTTAGAGACAATTTGA
CCTTGTGGACATCAGAGAATAACAAAGATGATGATCAAGACGAGTCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13274MSTRG.13274Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13274.1.p1.exon1MSTRG.13274.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13274.1.p1.exon2MSTRG.13274.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13274.1.p1MSTRG.13274.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104_pilongenomesc0000104_pilon:666869..670339 +