MSTRG.13262.3.p1 (mRNA) -

Overview
NameMSTRG.13262.3.p1
Unique NameMSTRG.13262.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:479533..486903-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13262.3.p1 ID=MSTRG.13262.3.p1|Name=MSTRG.13262.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7371bp|location=Sequence derived from alignment at sc0000104_pilon:479533..486903- (Clytia hemisphaerica_ch_hm2_pilon)
AATTTTTTTCAGCGCGAAAATTTTCAAAAAGCGTGGCCTGCAAGAATTTC
AATCGCACCACACAGCCAACAGCACAGCAGCACATATCTGTCTGGTTTCA
GTTCATTTCGGTCAGTTTCATTAATCATGGCAGAAAACAATGTCAATCAG
GTAGAAAATTAATTTTTCAAGGAAAGTACCCTCTTAATCATCGTCAAGTT
AACCAGCAGTAGGATAATCATCTGAAATCATTTATTAAAATATATAAAAC
ACTGTGTCAATCATCAATGTCCAGAATGTCAGAAATGTATCCATCATTTC
CACCACAAGCAAGCAAAATAAATACCGTCAAGAATCATTAATTCAGTCTA
ATACAAGCTACAATCATGGTAGAAACATATTGAGATTTTGGTGTATTTTA
GCGTTTTCAGAATTTAAAAGTTTGGGCGAGAGAATAGTTTGTTTGGGAGA
ACGCAACGACATATTGACTCAGTCATTAGTAAAAAACTTTTGAAAGGGGG
AGGGTTGCGACCCTTCTAAAGAGTGATTTTTTATGCTTAATTAACATCCT
GCTATAACCTGTGTAAAGTTAACATTTTCAATAGCATCATGGCGTATTCT
TTGTTTTAAAGTGTACATAGTAGGAGTAAATCTGGCGCCAGCTACTCTGA
GCCAATGCGCCAAGACCAATCTCGAGTCTGCGCCGGAGATATCCAAAGCA
ACCAAAGCAGCAAAATTTCAAAACAAATGTTTCTGCTCGCAGTCTAATCT
ACCATTTTAGAATCTCATATTTGCACACTAGCGAGTAGTTTTGGCGAATT
AGTCCTGGACAGAATCACGTGTAAATAAAACAGCGTGCTTGGATAATAAA
AAATCATGCGCGAGTATAAATTTTAAGATGGCGGGAATAGACCTTTTTGC
CGCCTTTCCATCTGCCATATTGAATTGTATGCAAAAATTATGGTGGCCGA
ATTGCTGTGGTGAAATTCCATTAGAAAGTATGCAAAACATATGCAAAAAG
AAAGTGTTAATATAATACTTACATGCATACTCTCGGGTGCCTAATAAACG
TACATGTACGTGTTTTGAAAGTTTAATGTGTGTACTCCGTCTTGGTGGAA
TTTTTTAATGGCATGAAAACAGAATATGCAATGTCTTTAAGAACAAATTT
CTAAAATGCTTTTGTTGTTCCTTAAATATTTCTTTTTGGATTAAGAAATT
CCATCTTATATTGTTCTAATAATTATAAAATTTATTTATAAGATGCTTTG
TTGTCTTTTTTTTTCTTTGTGTAAACTTGCATATGTTTTGCATACACGTT
GTCGTTTTTTTTTAATAAGGAACCTTAACTTTGCTCTGAGCCTGGAGTTC
CTTATTTTTCCAGAGCATTTCAGCCTCAAAGTTCCTTATCGAGTTCCTTA
TTTACATAGCTGCTCAGTTTGGATAACCATCTCTTACTGTTCCTTAAAAC
TTGTTTTCTTATTCTCAGCCTGAGCAGTTCCTAAACAATTCCTTATTTTT
TGAACCATTTTCAGCCTTGAGTTCCTTATAAACGTGTTCCTTATAAAAAA
AAACATGTACTTTCCAACTAAATCCAACCACGGCTTTTTCGTTCCTCTAT
TTTTGCATATTATTCAAGATGGTGGATGGAAAGGGGAAAAGGTCTATTCA
GATGTTTCTTGATGGCCAATTGACATCTAGCTAATCTCAAATTTTAATAA
TGATATTAAACATAACTATACATGACATCACTTATGATTAGGAGATATAC
ATTTTACAATCTTTTGATAATATTTAATTTCCTGCTTGTTATACTTGCAT
CCACCAAAGTGTGGAGTAATTAGTTATGTAAAAGACTGTTGCCTTCGCTA
AAAGGAGTATTGCTATTTTAGCACTTCAACTTTCTTTCATTGAATTGAAT
ATTTCAATTTGGAGGGGTTTGATGGCTCCTAGGCTATATTCCAAGCCTTA
TTGGAGCAAATTTGAGCTTTAAAATCCTGACATCCTAAGAGACACCGTCC
TGATATGAAATCAAATATGTCAATAAGAATGTCCTGGGTTGAAAATTTTC
TGAAAAATTAATTAGCAAGAGAGACTCTTTTTAGGTACCCAAGATTGATT
TGGCATTACACCATTGCAAAATATTTTTCATGGAAATTAACCTTTTCTAA
TGCTAATGTAATCTAAATAGGAAACAAATATTGAATTCTATTCTCTTTTG
CTCATACATTTTAAATTTCAAGATAAGAACAGCTATTAATAAAATAAATG
TAAATTGATATTGACATATTTAATGATGTCATAATCAATGCATACTCCAC
CTCCAGAGCACAGAAGGTTCTTATTTTATTTTCAATTTTTCACACAGACT
CAACATATTCTCACTTTTAAATCTCTTGGCCTTGGGATTTCTCCAAAAGC
CGATTAAAATAAGATATTTTTACATACTCCACAAAATACTTCATTTACAA
AATATCCTCATTGATGTAACTCTGAAACATATTATATTCAACAAACTTCG
AAACCTTAAAATTTTTAAAATTTACATAATTTCGAACACTTTGAGGGGTC
CATCAATTTCATCCACTGATATTTTACAAATTACATAGCTGTTTTAAGAT
AACGATCGCAAATGTCATAATCAATTTTGTCAGTGCTGTAAATTTTTAAC
AATCTCCTTTTCATTGGATAAATGCCATCAAAATATACAAAATTGGATGA
TTACACATAGATTTACCCCTGCAAATACAGCTTAGATTCTTATTCATTAT
GTCTATAAATTGAAGCTGGTAAAGACAATTGCATGGGTTAGGCGAACCCT
AAAAATATTTTTGTTTCCGGTCCACCGGGTGACGAAAAAACCACTCACCC
GGCCGGCCGCAAAAAATTTTTTTTTGCTAAATTTCGATCCCAAAACTCGA
TTTTTTAAAGCACTCGTAGAAGTTAAAATGATGGTCTTCTTTACCTTAAA
TCTGTAGTAACTTGACACTGCTACAGGCTTCGGCATAAGAAAAATTCAAG
TGTGATCATCGCACGCCTAGATTTTGATTTATAGTGGTCTAGGCGTGCGA
TTATTCAAATACTTAATTTTCATCGTTTATATTTTCAATTGTGTTACAAT
ATCTCTAAGAACTGGACACTCTCTTTCATTTTGAATATTTATCTTCAATT
GCTAAAGGCTCTAAACTGTGATTACGAAGTGAACCTTTTTGAGAAAAAAG
TAGAGTGAGAGAAACATTTCCCCAATTTTTTAAATCCTCACTTTATGAAT
GTTTCTTTTTATTTTACTCACAAGTCAGCATGATTCCATTTATAAAAACA
AAGATGTTTACTTACTGAAAAGTCCCCACTTTGTGAATGTTTCTATTTAT
TTTACTCATAAATCAGCATGATTCTTTTATAAAAACCAAGTTGTATATAA
AATAACATTCTTAAAAGTTGAGTTGCAAGCAAGAATTAAAACAAAAACAA
TGCAGGATTTAGTTTGAGATGAATAAAATTTCATTTCTATAACAATGATC
AGGATAAAACCTTCATTCCAAGTGATTTCTAGGCGTGCATTTTACAGTAG
AATATAAAATATCACGTGCGATAAATCACACGCCTCAAAAACTGATTCAC
TAAAGTTTTCCAAACAAACAAACTAACCCTAGCCCTAACAATGATGTACA
AAAAAAAATGCGGCCGGGTGACGACGAAATAAATTTTCACCCGGCCGGTG
GACCGGAAACAAAAAATTTTTTCGGGTTCGCCTTACTGGCGATTAATGGG
TTTTTTAAGCTATCTTCAGTTATAATAAAAGGTAGAAATAACTGAACATG
GAAAGGGTTCAATTTTATGTTTAGATTTCCATTTCCATTTATATTGGATC
TCCTTGCATGGTTTATAGACCATTCAATGACCCAAATAGCTCAAAATATT
CTATTGTTTCTTGCTATAGATGGCCACATTTTTTCTTTTTTCACACTTTC
CTTTCATGAAAAGTTGGACCCCATTCAGTAGGGTAGGCTCTAATCCCATA
CAGACCCAAGGATATTCCATCTCACCTGAGTGGGTTAGGCCTTAGCCCCA
CTCCATTTGAAAACTCCTTAAGTGGGATTTCGGCAAGTTTGGCTGGTTCG
GTTCTCATATGAACAGAATCCTTTTTTCATGCAAAATAGTATAAAGGAGA
GATGAATCTCAAATGAGATCCCAGTCTGTTGGCCTGCTTCCATGTTAATG
GCCCCTTTATTTCAATATCCTTATCTTGGCCTTTATTGATTATTTAATTG
TTGGTTCATTTCAGTTGATATGATTATTTTTTAGGCAAAGACCAAGGTTG
CAGATAAAGAGCAAAGTAAGAGCTTAACTTTAGTTGAGTAAGAAAATAGG
GCTAGATTTGTATGCTCTTTTTATAAGAATAACCTTTATAGAAATATTAT
GGTTAGTTTTTTGAGTTAAAACTTTTGAGTTTAGAACACTAGAGAAAAAG
AATCTTCCTCAGACTAACTATTCCAGACTCTATTCTCATGAAAAGCAGGT
ATTTTTTTCTTTAAGTTTTTATCTTATGATCAAGATTATTACTAATGTCT
GTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTTTTGATAG
TCAAATATAATATAGTTTCGAAATAATAAATGATACCAATAGCAATAATA
CCAATGCACCAACACTTAACATTTTCCAACGTTTAATTGCACAGTTCAAA
AAAGATAACATGACCCCCGTTTTTAGTAATAAGTTGGAGATTTGATATTT
CACAGAAAAATGCTACCAAGGGGTATTTCGGGTCCCATATCTTCTGAAGG
ACTTTTTTTTGTGTTGCCTTTTTAAATTCTAACAAGGTTCTTAACGGTTT
AAAAGACTGTTAAATTAGAAAAAAATCAATTTTTGCATAAAAAATGCAAC
CGCATCGAAAAATCGCGAAATTTACCAAATAACCATTCACTGCCAAGTCT
AAAAAATTTTTAACAAATATATTGGAATGAAATTCTTAAAAAATTAACGA
ATTTTCAATGCTGAAAATTGACATCAATTACTTATGGCCCAAGTTGGAAA
ATAACTCAGAAAGCCAAATAGAATTAAAAATTCCAGTAGTCTTAAAAATT
CAAAAATAAGAAAAAAAGAGAAATGTTCCGAAAAAATTCTAAAATAAAAT
GAGTTAAAAATAAATTTGAAGTTAAAGGAAGCAAAATAAACCGTTAGAAA
TGTAAAATGACGTCAAAATTCCAAAAATGACTCGGGATAAATAACTCGGT
TTTTTTCGTAATTCGGTTTTTTTAACTCGGAAAAAATAACTCGGGAATTC
CGGGCCTCTGACTTTATAACCTTAGAACTTCATTCTAGAACTACTAATAA
GCAGTTTTTTTATTATTAGGTTCTCAATCATCAAGTGGCGAGCAAAATCA
ACAATCAGAGATGAACTTTCAGAATGTCACTGAAGCATGCCAAGGTTATT
TTTGAAATTTATTTGAAACATGTCAGAAGCTTTTTTCAGTATAATGAAAA
GGGAATTTCGGCGTGGAATTCTGGGCAAGGGAGCCAGTGTGAGATATATA
AATAGCCGTATCAAAAGCGCAAATTGGGCTAACTTGTTTTTTCTGATTTT
ATTATAACCTTGCTTTAAAATGGAGGGGGTTAATCTAAAGAATCCTACAT
CTACTAAAAATAGACAAAAAGAAGGACAAATTTCATAAAAAATGACATAT
TGCGCATCCACAACCCCGACCCTGTTAGTTTGTCCATGTTTATCACAGGA
TTTAACTACATATGGCTAAAAGAAAGAGAAATTACGCATGCGTGTTATAA
TGCAGGATTTTTTAGAGGAACAGACTGAAATTGAGGCGAATATATTGAAT
TTTTAGTATTTGTTGATTTATGATGTAATCATTTTTATTGCATCTTTAGG
AATCAAGCAAGAGTTTGCTTATTCATTTTCAAAATGGGCGGCAGCCTTTC
AGTAAGTGAATTTAAACTACAAAAATCAATTTAAAATGAAACATAAAAAG
GGACTAATATTAAAATTTGACCGTTCACAAAGACATTCCCATAGACTTTT
TTACGTTTTACTTACCTTGAGGGAATTAATTTTGGCGAGCATGAAAATCC
TAAAAAATTTTGATCTCAACAATAACGAATTTTTTTAAGTACTTTAATGG
GATAAATTTTCGCGGGAATTAATTTTCGCGGATTTCCCGGATTTCCCGGA
TTTGGGTGTCATCCGCGAAAATAAGTCCCATTGGAAATTTGAAAAAGGCC
CATCCGCGAAAATTAGTTTCAGCAAAAAATTAGTTTCAGCGAAAAATTTG
AATTTTTTTTGCAATCCGCGAAATTTCTATTTTTATCGTTTTTTATTTTT
TTTCTACATGAGGGCACGCAACCCTCGAAAAAGGTCAAATCCTCGATATG
CTTGTTAGCAAAAAATCGTTTTCCTCAAAATTTTCTTCACAAATTTAGAA
ACTTGGAAAAGGTATTGGAAAATTTTTTATCTAAAGTGATCGCTTATTAA
AAGCTTTTCAATGCAAGAGGGTAATCCAACTGGCTTGAAATTTAACATTT
AAAATGATATGTAAGAAAAGGAGGGAAAACGGAAAACAAAATTCTTAATT
TCCTGGAAAAAATTTATTTCAATGTTTTGACCCTTTTCAAAAATTTTAAT
TTGTACCCCAATCCGCGAAATTAAATCCCCGCGAAAAATCAGGAAATCCC
TCATCCGCGAAAATTAATCCCCGCGAAATCTTAAAATTTTGCGGATGAGC
TCAACCGCGAAATTTAATCACCGCAAAGATTTATCCCATTAAAGTAGTCT
AAAGGTACACTATTTCCATTTTACTAAGTGTGTAAGGTTCTGGGTTGATT
CTCAAATTAGGTCTAACCTATTTAAAAAATAGTACTTTTTACCTCTGCTT
AATGTTTGTCGATTTAAAGCGTAAACAATGGTCAGCTAAACCAAAGAGAA
TCTCTCTACTGTGGTAATTGTTCTAAGAATATTTTAATATCAGAAAATCA
TACAATGTTTTGATATCCTATTATATCCTATGAGATGGTGCCTCTCTGCC
TAATGTTTATCAGTTGAAGCATAGACTGAACTGAACTGACAACTAGAGCC
AAAGGGAGAAAAACTGTTATAAGAATACTATAAGGAGTTTTATTTGAATC
ATAAAATCTTGAAGTCCTACTTTTGTGTTTTTAGAGAAAGTGAAAAGATC
GACATGTTTTTCGAGAAAAGGTTGGATGAGCTTATTCAAGAAGCAGAAAA
AGCCGAAGACATTTTGAAATCACAGAAGGCAGCTTTAAAAGAGAAATTAA
GATGTTTGACAAAGACATTAAATCAAGTTGTAGAAAATGAAAGTTAAAAT
AAATATAATGCAGAATCTTTA

Coding sequence (CDS) from alignment at sc0000104_pilon:479533..486903-

>MSTRG.13262.3.p1 ID=MSTRG.13262.3.p1|Name=MSTRG.13262.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2055bp|location=Sequence derived from alignment at sc0000104_pilon:479533..486903- (Clytia hemisphaerica_ch_hm2_pilon)
TCCTACTTTTGTGTTTTTAGAGAAAGTGAAAAGATCGACATGTTTTTCGA
GAAAAGGTTGGATGAGCTTATTCAAGAAGCAGAAAAAGCCGAAGACATTT
TGAGAATCAAGCAAGAGTTTGCTTATTCATTTTCAAAATGGGCGGCAGCC
TTTCAGTTCTCAATCATCAAGTGGCGAGCAAAATCAACAATCAGAGATGA
ACTTTCAGAATGTCACTGAAGCATGCCAAGGCAAAGACCAAGGTTGCAGA
TAAAGAGCAAAAATTTTTTTCAGCGCGAAAATTTTCAAAAAGCGTGGCCT
GCAAGAATTTCAATCGCACCACACAGCCAACAGCACAGCAGCACATATCT
GTCTGGTTTCAGTTCATTTCGGTCAGTTTCATTAATCATGGCAGAAAACA
ATGTCAATCAGTCCTACTTTTGTGTTTTTAGAGAAAGTGAAAAGATCGAC
ATGTTTTTCGAGAAAAGGTTGGATGAGCTTATTCAAGAAGCAGAAAAAGC
CGAAGACATTTTGAGAATCAAGCAAGAGTTTGCTTATTCATTTTCAAAAT
GGGCGGCAGCCTTTCAGTTCTCAATCATCAAGTGGCGAGCAAAATCAACA
ATCAGAGATGAACTTTCAGAATGTCACTGAAGCATGCCAAGGCAAAGACC
AAGGTTGCAGATAAAGAGCAAAAATTTTTTTCAGCGCGAAAATTTTCAAA
AAGCGTGGCCTGCAAGAATTTCAATCGCACCACACAGCCAACAGCACAGC
AGCACATATCTGTCTGGTTTCAGTTCATTTCGGTCAGTTTCATTAATCAT
GGCAGAAAACAATGTCAATCAGTCCTACTTTTGTGTTTTTAGAGAAAGTG
AAAAGATCGACATGTTTTTCGAGAAAAGGTTGGATGAGCTTATTCAAGAA
GCAGAAAAAGCCGAAGACATTTTGAGAATCAAGCAAGAGTTTGCTTATTC
ATTTTCAAAATGGGCGGCAGCCTTTCAGTTCTCAATCATCAAGTGGCGAG
CAAAATCAACAATCAGAGATGAACTTTCAGAATGTCACTGAAGCATGCCA
AGGCAAAGACCAAGGTTGCAGATAAAGAGCAAAAATTTTTTTCAGCGCGA
AAATTTTCAAAAAGCGTGGCCTGCAAGAATTTCAATCGCACCACACAGCC
AACAGCACAGCAGCACATATCTGTCTGGTTTCAGTTCATTTCGGTCAGTT
TCATTAATCATGGCAGAAAACAATGTCAATCAGTCCTACTTTTGTGTTTT
TAGAGAAAGTGAAAAGATCGACATGTTTTTCGAGAAAAGGTTGGATGAGC
TTATTCAAGAAGCAGAAAAAGCCGAAGACATTTTGAGAATCAAGCAAGAG
TTTGCTTATTCATTTTCAAAATGGGCGGCAGCCTTTCAGTTCTCAATCAT
CAAGTGGCGAGCAAAATCAACAATCAGAGATGAACTTTCAGAATGTCACT
GAAGCATGCCAAGGCAAAGACCAAGGTTGCAGATAAAGAGCAAAAATTTT
TTTCAGCGCGAAAATTTTCAAAAAGCGTGGCCTGCAAGAATTTCAATCGC
ACCACACAGCCAACAGCACAGCAGCACATATCTGTCTGGTTTCAGTTCAT
TTCGGTCAGTTTCATTAATCATGGCAGAAAACAATGTCAATCAGTCCTAC
TTTTGTGTTTTTAGAGAAAGTGAAAAGATCGACATGTTTTTCGAGAAAAG
GTTGGATGAGCTTATTCAAGAAGCAGAAAAAGCCGAAGACATTTTGAGAA
TCAAGCAAGAGTTTGCTTATTCATTTTCAAAATGGGCGGCAGCCTTTCAG
TTCTCAATCATCAAGTGGCGAGCAAAATCAACAATCAGAGATGAACTTTC
AGAATGTCACTGAAGCATGCCAAGGCAAAGACCAAGGTTGCAGATAAAGA
GCAAAAATTTTTTTCAGCGCGAAAATTTTCAAAAAGCGTGGCCTGCAAGA
ATTTCAATCGCACCACACAGCCAACAGCACAGCAGCACATATCTGTCTGG
TTTCAGTTCATTTCGGTCAGTTTCATTAATCATGGCAGAAAACAATGTCA
ATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13262MSTRG.13262Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13262.3.p1MSTRG.13262.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13262.3.p1.exon5MSTRG.13262.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13262.3.p1.exon4MSTRG.13262.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13262.3.p1.exon3MSTRG.13262.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13262.3.p1.exon2MSTRG.13262.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13262.3.p1.exon1MSTRG.13262.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104_pilongenomesc0000104_pilon:479533..486903 -