MSTRG.13261.1.p1 (mRNA) -

Overview
NameMSTRG.13261.1.p1
Unique NameMSTRG.13261.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:472503..474483+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13261.1.p1 ID=MSTRG.13261.1.p1|Name=MSTRG.13261.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1981bp|location=Sequence derived from alignment at sc0000104_pilon:472503..474483+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaggtTTAATGTTTGCCCCCTGGTAATGGTATTCGATAAAGATATCCT
CATGTGTCAACTGAGTTTTCATTTGGCAATAGAGCGCAAATTGAAACGGA
CATACAGACAATACAACAGTGGTGAAGAAAATATATAAGTCTGAAACCTA
TGAATCACATCGAAAATATAAAGAACCTACCTACTTAAACgaacgaaaaa
tttgaattgaaattgaaagaagACTGAGGAAAATAGTACCTGGTTTTAAT
GCTTTATGTCACCAGAACTGACGTAGACCATTGAAGTATCAACTTGATTG
TGACGTACTCTAGAAAAGAAGGAACAGTTGTAAAATATAAGACATTACAG
CGTGGAAATACAATTTTACGATCCAAAATGCATGATAAAACTCGAAAGCG
AAGCAGTTTTATGATGGATGACATATTGAGTGGAGTAGAGGGTAAAAGAG
ACAATCATAAATATAGTGAAAAATCGATGACTATGAACAACGATCTTACC
ATAAATGAAGTCGTCCAAAAGAAGTTGAAACTAGCTTCAGATGAGGTTTC
CAATCGTGCATTTGTAGAGGAGGAGGACGATGTTTTCGACTGTAAGTTGA
CTTTTCTAATCTTTATATCACATTATTTCTGTTTCGTTTTGAAATTCACC
AAGAGCTACCAAGAGATGATTTGATTCGTTAACttccattgttttgatat
ttctcAACACCAAAGTTCCCAATTATAATAAATCAATGATCTTGCTTCCA
AACAAAAATGCATTAATTAGTTCTTATATGATTTTGAATAGCTCATCCAT
ATACGCCTCAACCCAAAGGCGTTGAACTGAAAATAAAAGACACAAATTGA
AAACTATAAAATAATACATTACGCTTCAGCCATAACAGAATAATGAACAG
AATCTTATGGCATGAATAACCCTCCCCAATTCCTGCATCAggaataattt
tttatatatcccttttcttttcttttttactttagaCACCAAAATTGATT
CACCTCCATCACCGGAAATTCGAAAACTGCGGACAACGTTTTCATCGGAA
CAAGTGCTACTGTTAGAAAAGCGTTTTACAAAACAAAGGTACTTGTCAGC
AAATGAGAGATTGGAACTAGCGAAGAAACTCAAGCTCTCTGATAACCAGG
TAATTATGTTTTCTTAATTCTCAAACTATCCAGCTTTCAAAGCAACAGAG
AGGATTAGTTAGGTTCGGTTATTTGCTAtaggaaataaattttgagaagc
AAAACTCAACAAGGAATGATATGATCCATGCAATTTTagtataaaaatat
tcaactgttggtacgaaaaaatatttcaaaaattagaatatcaaaaatac
ttcaataaatTCCTATCATCTAAACAATCTCCTTCTGGTATCTCTCAATT
AACAGGTCAAAACATGGTACCAAAACAGACGAATGAAACTAAAACGTCAA
CTCAAAATACAAATGCAACGTTACCACGAAGAACTTTACTTCCAAAGTCT
TCATAACTGTTTTATACAACAACAGCCCCATAACGCCCCACACCCTCTTC
AAAATACGCCCCCATTATATCAAAACCCGCAACATCCACAACCACCACAT
GAATCACGTCACTGTTTCCGTGACAACAACGCTATCAAACCAATGCCGTA
TCTACGCCCGTCGATTTCACCGACGACGCCACGTCATCACGGAAAATCAC
CGGATTGCAACCAAGTGTCCTGTCGTTGCCGGCAAAATAGTCTCGAAATT
TAATGATGTGATGCGAACTTTTATCAACGGGGTTATTATAAGTGTATGTA
GTGAAAATATGACATGTGAATATTCTGTAAATAATATAGACCAAATACTT
AACTTTTTATGGTATTTTAGAGTCATTTTTTGTGtacataagaaaaaaat
attttttattaaaaagtaaaGATGTATAAAATATAAGATAATTAGAGTCG
ATAGATGCAAATAAATGAAACTCTTACTCAC

Coding sequence (CDS) from alignment at sc0000104_pilon:472503..474483+

>MSTRG.13261.1.p1 ID=MSTRG.13261.1.p1|Name=MSTRG.13261.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2178bp|location=Sequence derived from alignment at sc0000104_pilon:472503..474483+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATGATAAAACTCGAAAGCGAAGCAGTTTTATGATGGATGACATATT
GAGTGGAGTAGAGGGTAAAAGAGACAATCATAAATATAGTGAAAAATCGA
TGACTATGAACAACGATCTTACCATAAATGAAGTCGTCCAAAAGAAGTTG
AAACTAGCTTCAGATGAGGTTTCCAATCGTGCATTTGTAGAGGAGGAGGA
CGATGTTTTCGACTaCACCAAAATTGATTCACCTCCATCACCGGAAATTC
GAAAACTGCGGACAACGTTTTCATCGGAACAAGTGCTACTGTTAGAAAAG
CGTTTTACAAAACAAAGGTACTTGTCAGCAAATGAGAGATTGGAACTAGC
GAAGAAACTCAAGCTCTCTGATAACCAGGTCAAAACATGGTACCAAAACA
GACGAATGAAACTAAAACGTCAACTCAAAATACAAATGCAACGTTACCAC
GAAGAACTTTACTTCCAAAGTCTTCATAACTGTTTTATACAACAACAGCC
CCATAACGCCCCACACCCTCTTCAAAATACGCCCCCATTATATCAAAACC
CGCAACATCCACAACCACCACATGAATCACGTCACTGTTTCCGTGACAAC
AACGCTATCAAACCAATGCCGTATCTACGCCCGTCGATTTCACCGACGAC
GCCACGTCATCACGGAAAATCACCGGATTGCAACCAAGTGTCCTGTCGTT
GCCGGCAAAATAGTCTCGAAATTTAAATGCATGATAAAACTCGAAAGCGA
AGCAGTTTTATGATGGATGACATATTGAGTGGAGTAGAGGGTAAAAGAGA
CAATCATAAATATAGTGAAAAATCGATGACTATGAACAACGATCTTACCA
TAAATGAAGTCGTCCAAAAGAAGTTGAAACTAGCTTCAGATGAGGTTTCC
AATCGTGCATTTGTAGAGGAGGAGGACGATGTTTTCGACTaCACCAAAAT
TGATTCACCTCCATCACCGGAAATTCGAAAACTGCGGACAACGTTTTCAT
CGGAACAAGTGCTACTGTTAGAAAAGCGTTTTACAAAACAAAGGTACTTG
TCAGCAAATGAGAGATTGGAACTAGCGAAGAAACTCAAGCTCTCTGATAA
CCAGGTCAAAACATGGTACCAAAACAGACGAATGAAACTAAAACGTCAAC
TCAAAATACAAATGCAACGTTACCACGAAGAACTTTACTTCCAAAGTCTT
CATAACTGTTTTATACAACAACAGCCCCATAACGCCCCACACCCTCTTCA
AAATACGCCCCCATTATATCAAAACCCGCAACATCCACAACCACCACATG
AATCACGTCACTGTTTCCGTGACAACAACGCTATCAAACCAATGCCGTAT
CTACGCCCGTCGATTTCACCGACGACGCCACGTCATCACGGAAAATCACC
GGATTGCAACCAAGTGTCCTGTCGTTGCCGGCAAAATAGTCTCGAAATTT
AAATGCATGATAAAACTCGAAAGCGAAGCAGTTTTATGATGGATGACATA
TTGAGTGGAGTAGAGGGTAAAAGAGACAATCATAAATATAGTGAAAAATC
GATGACTATGAACAACGATCTTACCATAAATGAAGTCGTCCAAAAGAAGT
TGAAACTAGCTTCAGATGAGGTTTCCAATCGTGCATTTGTAGAGGAGGAG
GACGATGTTTTCGACTaCACCAAAATTGATTCACCTCCATCACCGGAAAT
TCGAAAACTGCGGACAACGTTTTCATCGGAACAAGTGCTACTGTTAGAAA
AGCGTTTTACAAAACAAAGGTACTTGTCAGCAAATGAGAGATTGGAACTA
GCGAAGAAACTCAAGCTCTCTGATAACCAGGTCAAAACATGGTACCAAAA
CAGACGAATGAAACTAAAACGTCAACTCAAAATACAAATGCAACGTTACC
ACGAAGAACTTTACTTCCAAAGTCTTCATAACTGTTTTATACAACAACAG
CCCCATAACGCCCCACACCCTCTTCAAAATACGCCCCCATTATATCAAAA
CCCGCAACATCCACAACCACCACATGAATCACGTCACTGTTTCCGTGACA
ACAACGCTATCAAACCAATGCCGTATCTACGCCCGTCGATTTCACCGACG
ACGCCACGTCATCACGGAAAATCACCGGATTGCAACCAAGTGTCCTGTCG
TTGCCGGCAAAATAGTCTCGAAATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13261MSTRG.13261Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13261.1.p1MSTRG.13261.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13261.1.p1.exon1MSTRG.13261.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13261.1.p1.exon2MSTRG.13261.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13261.1.p1.exon3MSTRG.13261.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104_pilongenomesc0000104_pilon:472503..474483 +