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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000104_pilon:319234..326145+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13245.1.p1 ID=MSTRG.13245.1.p1|Name=MSTRG.13245.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6912bp|location=Sequence derived from alignment at sc0000104_pilon:319234..326145+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCAGCTTTGATGTTCATAGACTATAGACACTGCAATATATTATATCTC
AATATCTCAATAACTAATACTttaactacatgttttttagaCGGGAAAAA
AGGAAATATTAGAACAAACAAACAGAATCAAAAATGAGACTTCACCCGaa
agtcaaagaaaatttcCGTTCAATAAGAATGATGTGGTTCTTGCCAAATA
CGACAATGAAGTATTTTATGCCAAGATTGTTTTGATCAACTATAAACGTG
AATATGCCAAGTGTTTATTTGATGATGGCTCAAGAGAGGATATACCTTTC
CAAAATATCTTTGATGGTAAGCATTGATTGGTTACTAGACCCCCCAATAA
AACTAAAACTTCTCAGAATCCCTGCCGCGAAAAGTCCAAATAGAGCCCAA
ACTTTGATTACAACCTTTGATTGATTAGGTATTGGTAATGCACAAATTAG
CGACGGCTATAAAGATATGTTAGGACGTCCTGACAGGAAACCAATAAAAA
CTATCTGTATTTCcaaaccatttttgatgttATAAGTATTAATTAGTTAC
TAGACCCccaataaaactaaaatttctcAGAATCCCTGTGAAAAGTCTAA
AAAGCCCAAATTTACAACCTTTGATTGGTTTGGTGATATAAATACAATAG
TGACGACCATTAAGCCCCCATTAAGACATGTCAAAACGTCCTGACATGAA
GAAACCTAATAACAACTCAATGAATGTCGAGAACTTAAGAAACACAACAA
AACCTTGGTTGGCCCCAACTGTCACTTCAGACTAAGGTGGTCTTGTTAAA
TCACTTTCTGGTGTCCGGGGGAAACCAGAAATTAAGCCTCAGGAATTATT
TGTTCTTGATTTAGATTACGTAGTCATAATATTTCTATCACGGTATTTGT
GTCCTTAGTAGCAtttttttCTACTAACATTGAAATCCAAtcaatgtctt
ttcatttcgaAAATGTTTGACTTTAAAAGTGAGGTAACCATACAATAAAG
TACAATAAGTTCCTCATACAATAAAGATGCCTAAACAATCCCGTTCACAC
AGACTTGAAGTTGAAAACCCAATTTGTAAAAGTATGACTTAAAATTCTCC
AATTTTCCATTTGTAGTGAACGAAACGACCTCGGACATTATTTGTGTGGT
ATGTAAAAGTGATGCTACTGAACTCAACAACGATATTGTTCTTTGTGACA
ACTGTAACGTAGGTAAGAAAGAAATACTATTGGTTGACGTACaaaaatat
ttggtttgatcaacTTAAGACCCTTAATAGAACAAATTTCGCATTCAGGG
GTATAACTAATTTCCGCGACAAGATATTTTGGTCCATATTCGACAAGATT
AGTTACTTTATTGTCAAAAAACGGATCGCTCGGGAAAAtaagttttcaca
aaaattaaaatgctagtTTTTGAATGCTCACAAAAttagttttcaccaaa
attgttaaatagaatgggcctttttcaactttttttagacCCAAATACAA
TATGATCATCTACTTTTTCCGGGAAAAAGAGCTTTATACACCCCCTCGCT
TCCATTTTCACTCCATCCTTTAATACCCTAACGTCCGATTTATTTTCCTC
ACTTTCGAACAGACGTTTAAAATCCCAGACCTTAACATTACAAAGTAGTC
CCATTTTAAGAGTTTGAGGAGGTAGTCATATAAATGTGGTTTCCTATTGC
AACATAACTTGGCGTAGCTTGGCGCATTTTTAACTTTTCCTGAGGGAACT
TGTACTCCAAAAAGAGCTGATAAAATTTCCTGTAACACGAGCATGAGGGT
GAAGGAGTGAAAATTCGTCAACACAAAGATGTCCAAACACCCGAAAGTTA
AGATTCCTTTTTGGAGTTCCATCTTCTCTTTGGTATCACTATTCTTATCA
ATGATATTCACTTTTAATCTTTAGGATTTCATCAAAAATGTCACGAACCA
GTCATCCCTTCAGATGTTTTGAAGCCAGAGGCACCATGGAAATGTGTTTA
CTGTTCAGACGGTTTGAAAAATCCGTACGTCGAGTCCAACCCCTTCAATG
AAAATGAGGCTGagacaaaagaaaataacaataaagtAAGTATGTCCAtc
gggctcttccagaaaatgtctgtacatgggggtggaggatatagtttCCG
GGGGATAgtgaaaagtttagaaaatttaCCCTGACCAGggagtaaacttg
ctctgtttgggggtaattttgctctgtttgagggtaattttaattttcca
tggggtcaactgatgcttgtccggggggttagaACTGCTGATcagggggt
caaaagtcacaatatccaggggggggggtaaatttccagaaaatgttGCG
GTCGCTATCGATTTATATCGAGAAGAGCTCATAATTGCGGTAGATACGGA
CATAAGTCTTATAGACCTAAAATGATATAGAAGACCTAAACAGATGTATA
ACAAGCTAAAATAgattatgtttcatttttttcaggAGGAAAAAGAAGGA
TTCCAAGAGGACATTAAACCCGaggaagaaattgaaaataaaattgaggA
GACGAAAACCAAAAAAGATGAAATAATTACGGATAATCTAGTTGAAAAAA
GTCAATGCGATATTTCAAAGGAATCTGTTACCACTTTAGAAGATGTTGAT
AATAATCTTGAGGATTCGACTCAACAATCACCACAAACTTATGGTGAACA
AGTTGTTATTGCGCATGCGGATAGCACATCAAATGACGATCTCATTGTTG
ATATTGTGAATGAAAATTCAAATAGTGAACCACAAGTCGTTATCCAAGAG
GTTAaggaaaaagttgaagaaaccGACAAAGTTGAAGTAACTTGCCCACA
ACAAGCATCAAGAACTGTAAAACagcaaaataaagaaagataTTTGAGAG
ACTTTCCTAATCATAACTGGCTTTTAGAACGTTTAAAAACGGAGAAGAAA
TTAAACTCAAATGAAATCGAGAAAATTGAACAGACAGTATACAAGCAACA
TAAACAAGAAACACAGCAACACGATAACCATGACTTCATGAAGAAATTTC
TgctagaaaaaaaatccaaaaacttgAAACTAGACTTGAATAACAATAAT
TCATCGATGAAAACGACAATAGTAATACCGACAGCAAACTTAGTACATTC
GACAACAACTAAAGTCAAAACACCTGTTACTCCATGTAATGAGAATCCTA
TCTTCGTTAAAAAGCGAGAATCGCCGGATGGAAAATCCATTGATATACCA
GCCAGACCAGTAGTCGAATTAAACATTCCCAAAATAACCAAAGAATTTTT
CAGTAACGTAAAACCAAGTTCACCCAATATGTGTGCACAAAGCAAACAGA
CTAAAATCGAATTCCCAAGTAATAACAATcatatcaaaattaaaagacAG
ATATCTGATATACGCCATAGCCGTCCAGTACCACAAATATTCTCACCATC
AATTTCTCCTCCGATCAGTTCTTACCGACCTTCCCGATCACCGACAAGCC
CATTGGAAGAAACAAAGACAAAGATATACCGACCAGAAGACATTGAACGG
TGTTTGATGAACGTATCTCCTGTTGAACATTCAAAATTCGTTTATCATCA
ACCAGTTTATCGGGAAACTCGGGAAACGACAATTTATCCGATTGCCGAGG
ATGTGTTTACCGAGGTTCAAGATATTCGACGAGTACATCATCGTCCATCA
TTTCCATATTACCGAGACCGAAAATCTCCGTGCAAATCGAGGCTACATTC
TGAATCTAGTGTAGAACTACCACAACGGTCTAGACTTCAATCTCATCCTT
TCTTCGAGCCAAAAGAAACAGAGAGATATGCAAAGAACATTGAGAAATCG
CCAGCtaaacatgcacataaaagacTTTTAAGTGAGACTAAGTATGATTC
ACAACCTAAACATCTGACAACTCTAAAACGACCTTCTTCTGGGGATTCAT
ACCACGATATTCCACTTAAACGACGCTTTCCAGCAAGTGTTTCTTCACCG
ATATCCACCGTCTATCATCATCCTTCAACCATACTCTCACCAAACACACG
CACTTCATCGTTTCCAAGAAGTCAAGAAGTATATTACCGCAAAGAAGAAT
TCTTCGTTTGCTCGCCAACAAACTCTAAATCGCCTAAAACGTACCAACAA
CAAGAACTGaaaaaaaCCCAACCGAAAGAATTGAAAACTTTGAAGAATCA
TAATTGCTTGAGTTGTGGAAGGCCAGCTCAATTGTTGTGCTCAGCATGTC
GTTTGGTTCGATATTGCTCAAGAAAATGCCAGGTAGGTCGACTTAAATAT
TCTAATGTCCCATTAAAATCTGATTAGAAGCTTTTCAAGAGATTTCTATC
CTAATTACGATCCCCTACGGCTAAATGGCACAACAATGCCTTATGATTCt
ttgtgacatttttgattCTACACTTTCTGTACAAGCTGGAAAAATTGGGT
GAAAATACCCAAGAAAATAATTGTCGCACTTCCCTCCTTTCCTTTGGACA
CTAAATTCATTGAATGATATTTCTACACTGGCCCATTTAACAACAACTTG
CGAGAATGTTGCTGCCtaaggaaaaaggaaaaaatccacCTACGAGGAAG
TCATCAATTTAATAGATGtttccttctttttcttctgttatAGCTCGATG
ACTGGAAGGAGCACTTATACCAAtgcaacatcaaaaaataaattcatttc
ttGTTTATTTGTTGTTAATATAATGTTAAAATTTTGTCAACATTTTCTCG
aaatatttatgacgtaatgttatacTAAGGAAATATTTGATAAGTTTGAA
GGGAGAATTGATGCAAACGCTTCCCATACAACATTCCCGcacataaaatt
gaaattgctGAAGTATCGAAGACTTAGAAATATCGGATATTACTTTTCGC
GAGCGAATTCTTGTGACCgaattttttaaattacttTCTTCGAGggtgaa
atataaaaaataaagtgttCATTCtttttacttctttagttttactaaaa
tatatattttgattattttttgttattttgtttgttgttgttgttatgta
ttttCAAATAACAGAGTGTAAATATAACGCGGGAAATGTATTATGCAAAT
ATCACAATAAATGCcgttgaaataaagaaaaaggaaagtaaATAATGGAG
CCGTTGTATTTCAGCCTTAGCCTTTAGGAGCACCCCCACCCCGCAAATGG
AGTCTCTGATCACTCCAAAAAAGGACACACCTCAACAAGAACTGTGGTTG
AATCTCGACTGGATTTATTAatactcccttctcacagacccggtagcatt
ttttcagccagtgtgGATAAAAATAActatattcccatatttttaaggct
ggggatttcaattctttaattttcaagtcagaagattcagtggggatggg
gtaaataacaaatattttgctgtgaggattggtttagttgattattttta
ataaggacaaaaattggaggatactTTCCCAcctgggacgatattttggc
caatttttccagtgggtctgtgagaagggagtgaaTCAAGGCATAGCCAC
AAATCAGATCTACGCTCTTCTCTTATAAGAATCATTAGGTTTTTGTTCAG
gctcagctgttcttatttttctggCACCTTGAGCATAATCTTTGTAATTG
CTCTCTAAAAAATTAGGGTATggaattaacggacactctaaataATACTA
AATGTAAATCGGAATCTTTGAAGGTAATCAAATGTACAAGCAGAAGATTT
CAAACCATCTGGTTATCACCATAAactggaaaaaattaattttctggtCC
AGTTAAGGATCTATGATTCACAACCTAAACATCTGACAACTCTAAAACGA
CCTTCTTCTGGGGATTCATACCACGATATTCCACTTAAACGACGCTTTCC
AGCAAGTGTTTCTTCACCGATATCCACCGTCTATCATCATCCTTCAACCA
TACCCTCACCAAACACACGCACTTCATCGTTTCCAAGAAGTCAAGAAGTA
TATTACCGCAAAGAAGAATTCTTCGTTTGCTCGCCAACAAACTCTAAATC
GCCTAAAACGTACCAACAACAAGAACTGaaaaaaaCCCAACCGAAAGAAT
TGAAAACTTTGAAGAATCATAATTGCTTGAGTTGTGGAAGGCCAGCTCAA
TTGTTGTGCTCAGCATGTCGTTTGGTTCGATATTGCTCAAGAAAATGCCA
GGTAGGTCGACTTAAATATTCTAATGTCCCATTAAAATCTGATTAGAAGC
TTTTCAAGAGATTTCTATCCTAATTACGATCCCCTACGGCTAAATGGCAC
AACAATGCCTTATGATTCtttgtgacatttttgattCTACACTTTCTGTA
CAAGCTGGAAAAATTGGGTGAAAATACCCAAGAAAATAATTGTCGCCCTT
CCCTCCTTTCCTTTGGATACTAAATTCGTTGCATGATATTTCTACACTGT
CCCATTTTAACAATAACTTGCGAGAATGTTGCTGCCtaaggaaaaaggaa
aaaatccacCTACGAGGAAGTCATCGATTTAATAAATGtttccttctttt
tcttctgttatAGCTTGATGACTGGAAGGAGCACTTATACCAAtgcaaca
tcaaaaaataaattcatttcttGTTTATTTGTTGTTAATATAATGTTAAA
ATTTTGTCAACATTTTCTCGaaatatttatgacgtaatgttatacTAAGG
AAATATTTGATAAGTTTGAAGGGAGAATTGATGCGAACGCTTCCCATACA
ACATTCCCGcatataaaattgaaattgctGAAGTATCGAAGACTTAGAAA
TATCGGATATTACTTTTCGCGAGCGAATTCTTGTgaccaaattttttaaa
ttacttTCTTCGAGggtgaaatataaaaaataaagtgttCATTCttttta
cttctttagttt Coding sequence (CDS) from alignment at sc0000104_pilon:319234..326145+ >MSTRG.13245.1.p1 ID=MSTRG.13245.1.p1|Name=MSTRG.13245.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2586bp|location=Sequence derived from alignment at sc0000104_pilon:319234..326145+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGAAATTTCTgctagaaaaaaaatccaaaaacttgAAACTAGACTT
GAATAACAATAATTCATCGATGAAAACGACAATAGTAATACCGACAGCAA
ACTTAGTACATTCGACAACAACTAAAGTCAAAACACCTGTTACTCCATGT
AATGAGAATCCTATCTTCGTTAAAAAGCGAGAATCGCCGGATGGAAAATC
CATTGATATACCAGCCAGACCAGTAGTCGAATTAAACATTCCCAAAATAA
CCAAAGAATTTTTCAGTAACGTAAAACCAAGTTCACCCAATATGTGTGCA
CAAAGCAAACAGACTAAAATCGAATTCCCAAGTAATAACAATcatatcaa
aattaaaagacAGATATCTGATATACGCCATAGCCGTCCAGTACCACAAA
TATTCTCACCATCAATTTCTCCTCCGATCAGTTCTTACCGACCTTCCCGA
TCACCGACAAGCCCATTGGAAGAAACAAAGACAAAGATATACCGACCAGA
AGACATTGAACGGTGTTTGATGAACGTATCTCCTGTTGAACATTCAAAAT
TCGTTTATCATCAACCAGTTTATCGGGAAACTCGGGAAACGACAATTTAT
CCGATTGCCGAGGATGTGTTTACCGAGGTTCAAGATATTCGACGAGTACA
TCATCGTCCATCATTTCCATATTACCGAGACCGAAAATCTCCGTGCAAAT
CGAGGCTACATTCTGAATCTAGTGTAGAACTACCACAACGGTCTAGACTT
CAATCTCATCCTTTCTTCGAGCCAAAAGAAACAGAGAGATATGCAAAGAA
CATTGAGAAATCGCCAGCtaaacatgcacataaaagacTTTTAAGTGAGA
CTAAGTATGATTCACAACCTAAACATCTGACAACTCTAAAACGACCTTCT
TCTGGGGATTCATACCACGATATTCCACTTAAACGACGCTTTCCAGCAAG
TGTTTCTTCACCGATATCCACCGTCTATCATCATCCTTCAACCATACTCT
CACCAAACACACGCACTTCATCGTTTCCAAGAAGTCAAGAAGTATATTAC
CGCAAAGAAGAATTCTTCGTTTGCTCGCCAACAAACTCTAAATCGCCTAA
AACGTACCAACAACAAGAACTGaaaaaaaCCCAACCGAAAGAATTGAAAA
CTTTGAAGAATCATAATTGCTTGAGTTGTGGAAGGCCAGCTCAATTGTTG
TGCTCAGCATGTCGTTTGGTTCGATATTGCTCAAGAAAATGCCAGCTTGA
TGACTGGAAGGAGCACTTATACCAAtgcaacatcaaaaaataaATGAAGA
AATTTCTgctagaaaaaaaatccaaaaacttgAAACTAGACTTGAATAAC
AATAATTCATCGATGAAAACGACAATAGTAATACCGACAGCAAACTTAGT
ACATTCGACAACAACTAAAGTCAAAACACCTGTTACTCCATGTAATGAGA
ATCCTATCTTCGTTAAAAAGCGAGAATCGCCGGATGGAAAATCCATTGAT
ATACCAGCCAGACCAGTAGTCGAATTAAACATTCCCAAAATAACCAAAGA
ATTTTTCAGTAACGTAAAACCAAGTTCACCCAATATGTGTGCACAAAGCA
AACAGACTAAAATCGAATTCCCAAGTAATAACAATcatatcaaaattaaa
agacAGATATCTGATATACGCCATAGCCGTCCAGTACCACAAATATTCTC
ACCATCAATTTCTCCTCCGATCAGTTCTTACCGACCTTCCCGATCACCGA
CAAGCCCATTGGAAGAAACAAAGACAAAGATATACCGACCAGAAGACATT
GAACGGTGTTTGATGAACGTATCTCCTGTTGAACATTCAAAATTCGTTTA
TCATCAACCAGTTTATCGGGAAACTCGGGAAACGACAATTTATCCGATTG
CCGAGGATGTGTTTACCGAGGTTCAAGATATTCGACGAGTACATCATCGT
CCATCATTTCCATATTACCGAGACCGAAAATCTCCGTGCAAATCGAGGCT
ACATTCTGAATCTAGTGTAGAACTACCACAACGGTCTAGACTTCAATCTC
ATCCTTTCTTCGAGCCAAAAGAAACAGAGAGATATGCAAAGAACATTGAG
AAATCGCCAGCtaaacatgcacataaaagacTTTTAAGTGAGACTAAGTA
TGATTCACAACCTAAACATCTGACAACTCTAAAACGACCTTCTTCTGGGG
ATTCATACCACGATATTCCACTTAAACGACGCTTTCCAGCAAGTGTTTCT
TCACCGATATCCACCGTCTATCATCATCCTTCAACCATACTCTCACCAAA
CACACGCACTTCATCGTTTCCAAGAAGTCAAGAAGTATATTACCGCAAAG
AAGAATTCTTCGTTTGCTCGCCAACAAACTCTAAATCGCCTAAAACGTAC
CAACAACAAGAACTGaaaaaaaCCCAACCGAAAGAATTGAAAACTTTGAA
GAATCATAATTGCTTGAGTTGTGGAAGGCCAGCTCAATTGTTGTGCTCAG
CATGTCGTTTGGTTCGATATTGCTCAAGAAAATGCCAGCTTGATGACTGG
AAGGAGCACTTATACCAAtgcaacatcaaaaaataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104_pilon | genome | sc0000104_pilon:319234..326145 + |
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