MSTRG.13244.3.p1 (mRNA) -

Overview


Name	MSTRG.13244.3.p1
Unique Name	MSTRG.13244.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:292664..295621+
coding sequence from alignment at sc0000104_pilon:292664..295621+

mRNA from alignment at sc0000104_pilon:292664..295621+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.13244.3.p1 ID=MSTRG.13244.3.p1|Name=MSTRG.13244.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2958bp|location=Sequence derived from alignment at sc0000104_pilon:292664..295621+ (Clytia hemisphaerica_ch_hm2_pilon)
TGAATGTATCGAATAttgaatcaaataaatttaGCGTACTTGAAGTCTCA
TTTTCACAAAGCTTCGATGCAAACAAGTCTTGCTTGAATTtggtgagttt
ttttttaatctacaGTGAGTTTGCTCTGGAAATAGCATTTCAATGTcgat
tttgaataatatttctCTAATTAATGCTGTAACGTCATATATGATTGCGA
TGATTGCACGATTACAAGCATGCAGCCCATATTGAATTCAAAATCTAGGC
AAAGTAGGTTGTTGGGATCTCTCCAGGGGGgagggcactcatatggtcca
aCCCATCGCATGTGCCgtccttaagggtaggtttttcgagactcTCGAAA
GCACTGTaatgtaagggtaccttttcacttcTCAAGGGCTGCACTCTAAG
GTTCTGATTTTGAAAGCAATTTTTTGACGGCACGTGCAGTCGTTTAGAAA
TCGCGTGCCCCCGGGAATTTCTAAAAGTCGTTAACTATGGCACAATTCCC
TAATATTACAGGGcggtgtaaaataaaaaaaaatcgttgTAACAAGCCTT
TTCTCATTCCAGCTGGGACAAAATGAAGGTTCTGTTGGCATTCGTCGTTA
CAATTGTGTTGGCTAACGCAGCAAGTAAGTCATTTGCCCTTTATTTTGGG
TGGTCCATCAATCTTTTGCATTATTCTGCACAATTGAAATGTTTCAGATG
CTTATCTATCttcaatttatcaaaaacactacgatttttgatacaaaaaa
acctttaaggataaagaaaaaaaaatattggaaatttcaaaaatatttga
agaaatatttcaaaaaacaataagaagtttgtttatgaaaaaaatccctc
TAGAATTAACCTATTTGGAAAGTTAAGTCTTTCCAGCCTCAAACATCAAA
CTTTCTATGGATCCCTGACGGCGTAGGGTTCTTGTTTACACATATAAGGT
ACCTCTAATCCCAGTACCAATGGGGCATTCAAACAGGGAGCAtgttcatg
tttttcttttacatCTTGTAGAACAATGCAAGGTTGACAAGAAGTACAGA
GTGGACTGTGGACATTCTCTTATCAAGAAAAGTGAATGTGAACGTAAACA
TTGTTGTTGGAGTCCTTTGGAAGAAAATAGTAAAGAGCCATGGTGCTTCT
TCCCTGGAAGAGCTGTTAATTTTggtaaatatattttcaaaactgtagaA
GAACGGTTGGTATTAGACGATGTTATTGTCTATTAGaatgatagtaaagg
cgggaaaatatcaTACATAAAATATCATAGAGAGGACTTTAGAGCCGTTA
TGGCAGCCGGTATATAGGGAAAGAAAATCGGCGGGAGAATTTCGAAGAAG
ACTGGCAGACTTAATCAGATGTAAactattttcggcaaaaagcccgtttg
cgaattttcttcggctttgggcttatttcttagatagtgatttgtctaag
gctatagcatagtctaagtTGGTATTTGCACAAAAGCGTGAGGGAATGAG
TTCTGCCGGGggaggtactaggtttgcgaaatGACAAAGGGTAGCCGCCC
CACTTTTGAAAATCGGAAATTTAGGGTATAAAATTGAGGAAAGCCGAATA
TTTGTGAATTTTAGAACCCTTACCAGGACTACTATCCAAAAAGTGTAGCC
TTTTTAGGGATAAATATCGGAGTTAGTGGTTTTTTGTAACCTTTagggga
ctgaaattagatactgtgatttttacgacccttagagggactttgAACAT
CCAAAAAGGCACCATTAAGGGCAGCACATACCCATACCTTGCTTTTCAAC
GTAGGGTCtatcatttttcaaatcttatgCTTCATTTTCCACTATTTTTA
TTTAGGTTTTCCAAACAGTTTCTTTGGAACTGAAGCATCAGAAGGAACTG
AGCAACCAGAAGAAACCGAAGGACCCGGAGGAACACAAGAACAGGAAACA
CCACAAGGCCCATTTGTAACAGAGGGACCCgaaaaaacagaggaaccaga
agagacagaaaaaccacaagcaacaaaaagaccatttaaaacagaGGCAT
CAGAAGGAACAGAGACCCCAGAGGGAACTGAGGGACCCGTAGGAACCGAG
GCACCAGAGGGAACTGAGGCACCAGAAGGAACAGAGACCCCAGATGAAAC
TGAGGGACCAGAGGGAACTGGGGGACCCGTAGGAACCGAGGAACCAGAGG
GAACTGAGGGACCTGTAGAAACCGACAGACCAGATGGAACAGAAGAACCA
ATTGAAACAGAAAGACCTCAGATAACCaaaggtttgattttttttaacgt
ttttcggACTTCGAACAGGGTAATATGAAAGAGACATTATGGATAGGAGG
AAAGGTTTGTAGGTTTCCACAAAGATCAGTCTGTAGTGATACTATCAAAT
ACTATGGAAGGATGACTCAGTTattcattgttttattttcttcTtttttt
tcatagCTGGCAAAATGGGTCAAGTTCGTATTTGCGAAGATGACAGCAGG
ATCATTTCTTGTAAGAATGAAGGAAAACTTCAAATCCTCGAAGGTTCTTA
CTATGGTCGCAAGATAAGCAAAGGTTGCAAAAAATGGTATCATTACCATT
GGAACACATCTTGCGGAGAAGCATCAAGTAAAAGAATCATGTCCTTGAAA
TGTGATGGCAGAAAATCATGTGAAATCTCTTGCGACAATGAGTCATTTGA
GGATCCTTGTTGGGGAACCAAAAAATACTGCTTAGTCAAATACAAATGTG
CTTAAACGAATCGACATAAATTTGACATGCACCCATTTATCCTATGATGA
CAaatataatattcagatataattttttgctttattaattaattcttaaa
ggtgtattttttatttgacgaaGGGAAGGGAAAAATAAGAAGGTAAATCT
GGCTTCAGTTTACTTTATTCTTATCAGTGTCCTTGATTCTTTTTTGGCCT
TATATCCT

Coding sequence (CDS) from alignment at sc0000104_pilon:292664..295621+

>MSTRG.13244.3.p1 ID=MSTRG.13244.3.p1|Name=MSTRG.13244.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4380bp|location=Sequence derived from alignment at sc0000104_pilon:292664..295621+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGGTTCTGTTGGCATTCGTCGTTACAATTGTGTTGGCTAACGCAGC
AAAACAATGCAAGGTTGACAAGAAGTACAGAGTGGACTGTGGACATTCTC
TTATCAAGAAAAGTGAATGTGAACGTAAACATTGTTGTTGGAGTCCTTTG
GAAGAAAATAGTAAAGAGCCATGGTGCTTCTTCCCTGGAAGAGCTGTTAA
TTTTgGTTTTCCAAACAGTTTCTTTGGAACTGAAGCATCAGAAGGAACTG
AGCAACCAGAAGAAACCGAAGGACCCGGAGGAACACAAGAACAGGAAACA
CCACAAGGCCCATTTGTAACAGAGGGACCCgaaaaaacagaggaaccaga
agagacagaaaaaccacaagcaacaaaaagaccatttaaaacagaGGCAT
CAGAAGGAACAGAGACCCCAGAGGGAACTGAGGGACCCGTAGGAACCGAG
GGACCAGAGGGAACTGGGGGACCCGTAGGAACCGAGGAACCAGAGGGAAC
TGAGGGACCTGTAGAAACCGACAGACCAGATGGAACAGAAGAACCAATTG
AAACAGAAAGACCTCAGATAACCaaagCTGGCAAAATGGGTCAAGTTCGT
ATTTGCGAAGATGACAGCAGGATCATTTCTTGTAAGAATGAAGGAAAACT
TCAAATCCTCGAAGGTTCTTACTATGGTCGCAAGATAAGCAAAGGTTGCA
AAAAATGGTATCATTACCATTGGAACACATCTTGCGGAGAAGCATCAAGT
AAAAGAATCATGTCCTTGAAATGTGATGGCAGAAAATCATGTGAAATCTC
TTGCGACAATGAGTCATTTGAGGATCCTTGTTGGGGAACCAAAAAATACT
GCTTAGTCAAATACAAATGTGCTTAAATGAAGGTTCTGTTGGCATTCGTC
GTTACAATTGTGTTGGCTAACGCAGCAAAACAATGCAAGGTTGACAAGAA
GTACAGAGTGGACTGTGGACATTCTCTTATCAAGAAAAGTGAATGTGAAC
GTAAACATTGTTGTTGGAGTCCTTTGGAAGAAAATAGTAAAGAGCCATGG
TGCTTCTTCCCTGGAAGAGCTGTTAATTTTgGTTTTCCAAACAGTTTCTT
TGGAACTGAAGCATCAGAAGGAACTGAGCAACCAGAAGAAACCGAAGGAC
CCGGAGGAACACAAGAACAGGAAACACCACAAGGCCCATTTGTAACAGAG
GGACCCgaaaaaacagaggaaccagaagagacagaaaaaccacaagcaac
aaaaagaccatttaaaacagaGGCATCAGAAGGAACAGAGACCCCAGAGG
GAACTGAGGGACCCGTAGGAACCGAGGGACCAGAGGGAACTGGGGGACCC
GTAGGAACCGAGGAACCAGAGGGAACTGAGGGACCTGTAGAAACCGACAG
ACCAGATGGAACAGAAGAACCAATTGAAACAGAAAGACCTCAGATAACCa
aagCTGGCAAAATGGGTCAAGTTCGTATTTGCGAAGATGACAGCAGGATC
ATTTCTTGTAAGAATGAAGGAAAACTTCAAATCCTCGAAGGTTCTTACTA
TGGTCGCAAGATAAGCAAAGGTTGCAAAAAATGGTATCATTACCATTGGA
ACACATCTTGCGGAGAAGCATCAAGTAAAAGAATCATGTCCTTGAAATGT
GATGGCAGAAAATCATGTGAAATCTCTTGCGACAATGAGTCATTTGAGGA
TCCTTGTTGGGGAACCAAAAAATACTGCTTAGTCAAATACAAATGTGCTT
AAATGAAGGTTCTGTTGGCATTCGTCGTTACAATTGTGTTGGCTAACGCA
GCAAAACAATGCAAGGTTGACAAGAAGTACAGAGTGGACTGTGGACATTC
TCTTATCAAGAAAAGTGAATGTGAACGTAAACATTGTTGTTGGAGTCCTT
TGGAAGAAAATAGTAAAGAGCCATGGTGCTTCTTCCCTGGAAGAGCTGTT
AATTTTgGTTTTCCAAACAGTTTCTTTGGAACTGAAGCATCAGAAGGAAC
TGAGCAACCAGAAGAAACCGAAGGACCCGGAGGAACACAAGAACAGGAAA
CACCACAAGGCCCATTTGTAACAGAGGGACCCgaaaaaacagaggaacca
gaagagacagaaaaaccacaagcaacaaaaagaccatttaaaacagaGGC
ATCAGAAGGAACAGAGACCCCAGAGGGAACTGAGGGACCCGTAGGAACCG
AGGGACCAGAGGGAACTGGGGGACCCGTAGGAACCGAGGAACCAGAGGGA
ACTGAGGGACCTGTAGAAACCGACAGACCAGATGGAACAGAAGAACCAAT
TGAAACAGAAAGACCTCAGATAACCaaagCTGGCAAAATGGGTCAAGTTC
GTATTTGCGAAGATGACAGCAGGATCATTTCTTGTAAGAATGAAGGAAAA
CTTCAAATCCTCGAAGGTTCTTACTATGGTCGCAAGATAAGCAAAGGTTG
CAAAAAATGGTATCATTACCATTGGAACACATCTTGCGGAGAAGCATCAA
GTAAAAGAATCATGTCCTTGAAATGTGATGGCAGAAAATCATGTGAAATC
TCTTGCGACAATGAGTCATTTGAGGATCCTTGTTGGGGAACCAAAAAATA
CTGCTTAGTCAAATACAAATGTGCTTAAATGAAGGTTCTGTTGGCATTCG
TCGTTACAATTGTGTTGGCTAACGCAGCAAAACAATGCAAGGTTGACAAG
AAGTACAGAGTGGACTGTGGACATTCTCTTATCAAGAAAAGTGAATGTGA
ACGTAAACATTGTTGTTGGAGTCCTTTGGAAGAAAATAGTAAAGAGCCAT
GGTGCTTCTTCCCTGGAAGAGCTGTTAATTTTgGTTTTCCAAACAGTTTC
TTTGGAACTGAAGCATCAGAAGGAACTGAGCAACCAGAAGAAACCGAAGG
ACCCGGAGGAACACAAGAACAGGAAACACCACAAGGCCCATTTGTAACAG
AGGGACCCgaaaaaacagaggaaccagaagagacagaaaaaccacaagca
acaaaaagaccatttaaaacagaGGCATCAGAAGGAACAGAGACCCCAGA
GGGAACTGAGGGACCCGTAGGAACCGAGGGACCAGAGGGAACTGGGGGAC
CCGTAGGAACCGAGGAACCAGAGGGAACTGAGGGACCTGTAGAAACCGAC
AGACCAGATGGAACAGAAGAACCAATTGAAACAGAAAGACCTCAGATAAC
CaaagCTGGCAAAATGGGTCAAGTTCGTATTTGCGAAGATGACAGCAGGA
TCATTTCTTGTAAGAATGAAGGAAAACTTCAAATCCTCGAAGGTTCTTAC
TATGGTCGCAAGATAAGCAAAGGTTGCAAAAAATGGTATCATTACCATTG
GAACACATCTTGCGGAGAAGCATCAAGTAAAAGAATCATGTCCTTGAAAT
GTGATGGCAGAAAATCATGTGAAATCTCTTGCGACAATGAGTCATTTGAG
GATCCTTGTTGGGGAACCAAAAAATACTGCTTAGTCAAATACAAATGTGC
TTAAATGAAGGTTCTGTTGGCATTCGTCGTTACAATTGTGTTGGCTAACG
CAGCAAAACAATGCAAGGTTGACAAGAAGTACAGAGTGGACTGTGGACAT
TCTCTTATCAAGAAAAGTGAATGTGAACGTAAACATTGTTGTTGGAGTCC
TTTGGAAGAAAATAGTAAAGAGCCATGGTGCTTCTTCCCTGGAAGAGCTG
TTAATTTTgGTTTTCCAAACAGTTTCTTTGGAACTGAAGCATCAGAAGGA
ACTGAGCAACCAGAAGAAACCGAAGGACCCGGAGGAACACAAGAACAGGA
AACACCACAAGGCCCATTTGTAACAGAGGGACCCgaaaaaacagaggaac
cagaagagacagaaaaaccacaagcaacaaaaagaccatttaaaacagaG
GCATCAGAAGGAACAGAGACCCCAGAGGGAACTGAGGGACCCGTAGGAAC
CGAGGGACCAGAGGGAACTGGGGGACCCGTAGGAACCGAGGAACCAGAGG
GAACTGAGGGACCTGTAGAAACCGACAGACCAGATGGAACAGAAGAACCA
ATTGAAACAGAAAGACCTCAGATAACCaaagCTGGCAAAATGGGTCAAGT
TCGTATTTGCGAAGATGACAGCAGGATCATTTCTTGTAAGAATGAAGGAA
AACTTCAAATCCTCGAAGGTTCTTACTATGGTCGCAAGATAAGCAAAGGT
TGCAAAAAATGGTATCATTACCATTGGAACACATCTTGCGGAGAAGCATC
AAGTAAAAGAATCATGTCCTTGAAATGTGATGGCAGAAAATCATGTGAAA
TCTCTTGCGACAATGAGTCATTTGAGGATCCTTGTTGGGGAACCAAAAAA
TACTGCTTAGTCAAATACAAATGTGCTTAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.13244	MSTRG.13244	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13244.3.p1	MSTRG.13244.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13244.3.p1.exon1	MSTRG.13244.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.3.p1.exon2	MSTRG.13244.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.3.p1.exon3	MSTRG.13244.3.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.3.p1.exon4	MSTRG.13244.3.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.3.p1.exon5	MSTRG.13244.3.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.3.p1.exon6	MSTRG.13244.3.p1.exon6	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000104_pilon	genome	sc0000104_pilon:292664..295621 +

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MSTRG.13244.3.p1 (mRNA) -