MSTRG.13244.1.p1 (mRNA) -

Overview


Name	MSTRG.13244.1.p1
Unique Name	MSTRG.13244.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:292645..295621+
coding sequence from alignment at sc0000104_pilon:292645..295621+

mRNA from alignment at sc0000104_pilon:292645..295621+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.13244.1.p1 ID=MSTRG.13244.1.p1|Name=MSTRG.13244.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2977bp|location=Sequence derived from alignment at sc0000104_pilon:292645..295621+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTTTTTGCCACGCGACAATGAATGTATCGAATAttgaatcaaataaatt
taGCGTACTTGAAGTCTCATTTTCACAAAGCTTCGATGCAAACAAGTCTT
GCTTGAATTtggtgagtttttttttaatctacaGTGAGTTTGCTCTGGAA
ATAGCATTTCAATGTcgattttgaataatatttctCTAATTAATGCTGTA
ACGTCATATATGATTGCGATGATTGCACGATTACAAGCATGCAGCCCATA
TTGAATTCAAAATCTAGGCAAAGTAGGTTGTTGGGATCTCTCCAGGGGGg
agggcactcatatggtccaaCCCATCGCATGTGCCgtccttaagggtagg
tttttcgagactcTCGAAAGCACTGTaatgtaagggtaccttttcacttc
TCAAGGGCTGCACTCTAAGGTTCTGATTTTGAAAGCAATTTTTTGACGGC
ACGTGCAGTCGTTTAGAAATCGCGTGCCCCCGGGAATTTCTAAAAGTCGT
TAACTATGGCACAATTCCCTAATATTACAGGGcggtgtaaaataaaaaaa
aatcgttgTAACAAGCCTTTTCTCATTCCAGCTGGGACAAAATGAAGGTT
CTGTTGGCATTCGTCGTTACAATTGTGTTGGCTAACGCAGCAAGTAAGTC
ATTTGCCCTTTATTTTGGGTGGTCCATCAATCTTTTGCATTATTCTGCAC
AATTGAAATGTTTCAGATGCTTATCTATCttcaatttatcaaaaacacta
cgatttttgatacaaaaaaacctttaaggataaagaaaaaaaaatattgg
aaatttcaaaaatatttgaagaaatatttcaaaaaacaataagaagtttg
tttatgaaaaaaatccctcTAGAATTAACCTATTTGGAAAGTTAAGTCTT
TCCAGCCTCAAACATCAAACTTTCTATGGATCCCTGACGGCGTAGGGTTC
TTGTTTACACATATAAGGTACCTCTAATCCCAGTACCAATGGGGCATTCA
AACAGGGAGCAtgttcatgtttttcttttacatCTTGTAGAACAATGCAA
GGTTGACAAGAAGTACAGAGTGGACTGTGGACATTCTCTTATCAAGAAAA
GTGAATGTGAACGTAAACATTGTTGTTGGAGTCCTTTGGAAGAAAATAGT
AAAGAGCCATGGTGCTTCTTCCCTGGAAGAGCTGTTAATTTTggtaaata
tattttcaaaactgtagaAGAACGGTTGGTATTAGACGATGTTATTGTCT
ATTAGaatgatagtaaaggcgggaaaatatcaTACATAAAATATCATAGA
GAGGACTTTAGAGCCGTTATGGCAGCCGGTATATAGGGAAAGAAAATCGG
CGGGAGAATTTCGAAGAAGACTGGCAGACTTAATCAGATGTAAactattt
tcggcaaaaagcccgtttgcgaattttcttcggctttgggcttatttctt
agatagtgatttgtctaaggctatagcatagtctaagtTGGTATTTGCAC
AAAAGCGTGAGGGAATGAGTTCTGCCGGGggaggtactaggtttgcgaaa
tGACAAAGGGTAGCCGCCCCACTTTTGAAAATCGGAAATTTAGGGTATAA
AATTGAGGAAAGCCGAATATTTGTGAATTTTAGAACCCTTACCAGGACTA
CTATCCAAAAAGTGTAGCCTTTTTAGGGATAAATATCGGAGTTAGTGGTT
TTTTGTAACCTTTaggggactgaaattagatactgtgatttttacgaccc
ttagagggactttgAACATCCAAAAAGGCACCATTAAGGGCAGCACATAC
CCATACCTTGCTTTTCAACGTAGGGTCtatcatttttcaaatcttatgCT
TCATTTTCCACTATTTTTATTTAGGTTTTCCAAACAGTTTCTTTGGAACT
GAAGCATCAGAAGGAACTGAGCAACCAGAAGAAACCGAAGGACCCGGAGG
AACACAAGAACAGGAAACACCACAAGGCCCATTTGTAACAGAGGGACCCg
aaaaaacagaggaaccagaagagacagaaaaaccacaagcaacaaaaaga
ccatttaaaacagaGGCATCAGAAGGAACAGAGACCCCAGAGGGAACTGA
GGGACCCGTAGGAACCGAGGCACCAGAGGGAACTGAGGCACCAGAAGGAA
CAGAGACCCCAGATGAAACTGAGGGACCAGAGGGAACTGGGGGACCCGTA
GGAACCGAGGAACCAGAGGGAACTGAGGGACCTGTAGAAACCGACAGACC
AGATGGAACAGAAGAACCAATTGAAACAGAAAGACCTCAGATAACCaaag
gtttgattttttttaacgtttttcggACTTCGAACAGGGTAATATGAAAG
AGACATTATGGATAGGAGGAAAGGTTTGTAGGTTTCCACAAAGATCAGTC
TGTAGTGATACTATCAAATACTATGGAAGGATGACTCAGTTattcattgt
tttattttcttcTtttttttcatagCTGGCAAAATGGGTCAAGTTCGTAT
TTGCGAAGATGACAGCAGGATCATTTCTTGTAAGAATGAAGGAAAACTTC
AAATCCTCGAAGGTTCTTACTATGGTCGCAAGATAAGCAAAGGTTGCAAA
AAATGGTATCATTACCATTGGAACACATCTTGCGGAGAAGCATCAAGTAA
AAGAATCATGTCCTTGAAATGTGATGGCAGAAAATCATGTGAAATCTCTT
GCGACAATGAGTCATTTGAGGATCCTTGTTGGGGAACCAAAAAATACTGC
TTAGTCAAATACAAATGTGCTTAAACGAATCGACATAAATTTGACATGCA
CCCATTTATCCTATGATGACAaatataatattcagatataattttttgct
ttattaattaattcttaaaggtgtattttttatttgacgaaGGGAAGGGA
AAAATAAGAAGGTAAATCTGGCTTCAGTTTACTTTATTCTTATCAGTGTC
CTTGATTCTTTTTTGGCCTTATATCCT

Coding sequence (CDS) from alignment at sc0000104_pilon:292645..295621+

>MSTRG.13244.1.p1 ID=MSTRG.13244.1.p1|Name=MSTRG.13244.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4200bp|location=Sequence derived from alignment at sc0000104_pilon:292645..295621+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGGTTCTGTTGGCATTCGTCGTTACAATTGTGTTGGCTAACGCAGC
AAAACAATGCAAGGTTGACAAGAAGTACAGAGTGGACTGTGGACATTCTC
TTATCAAGAAAAGTGAATGTGAACGTAAACATTGTTGTTGGAGTCCTTTG
GAAGAAAATAGTAAAGAGCCATGGTGCTTCTTCCCTGGAAGAGCTGTTAA
TTTTgGTTTTCCAAACAGTTTCTTTGGAACTGAAGCATCAGAAGGAACTG
AGCAACCAGAAGAAACCGAAGGACCCGGAGGAACACAAGAACAGGAAACA
CCACAAGGCCCATTTGTAACAGAGGGACCCgaaaaaacagaggaaccaga
agagacagaaaaaccacaagcaacaaaaagaccatttaaaacagaGGCAT
CAGAAGGAACAGAGACCCCAGAGGGAACTGAGGGACCCGTAGGAACCGAG
GAACCAGAGGGAACTGAGGGACCTGTAGAAACCGACAGACCAGATGGAAC
AGAAGAACCAATTGAAACAGAAAGACCTCAGATAACCaaagCTGGCAAAA
TGGGTCAAGTTCGTATTTGCGAAGATGACAGCAGGATCATTTCTTGTAAG
AATGAAGGAAAACTTCAAATCCTCGAAGGTTCTTACTATGGTCGCAAGAT
AAGCAAAGGTTGCAAAAAATGGTATCATTACCATTGGAACACATCTTGCG
GAGAAGCATCAAGTAAAAGAATCATGTCCTTGAAATGTGATGGCAGAAAA
TCATGTGAAATCTCTTGCGACAATGAGTCATTTGAGGATCCTTGTTGGGG
AACCAAAAAATACTGCTTAGTCAAATACAAATGTGCTTAAATGAAGGTTC
TGTTGGCATTCGTCGTTACAATTGTGTTGGCTAACGCAGCAAAACAATGC
AAGGTTGACAAGAAGTACAGAGTGGACTGTGGACATTCTCTTATCAAGAA
AAGTGAATGTGAACGTAAACATTGTTGTTGGAGTCCTTTGGAAGAAAATA
GTAAAGAGCCATGGTGCTTCTTCCCTGGAAGAGCTGTTAATTTTgGTTTT
CCAAACAGTTTCTTTGGAACTGAAGCATCAGAAGGAACTGAGCAACCAGA
AGAAACCGAAGGACCCGGAGGAACACAAGAACAGGAAACACCACAAGGCC
CATTTGTAACAGAGGGACCCgaaaaaacagaggaaccagaagagacagaa
aaaccacaagcaacaaaaagaccatttaaaacagaGGCATCAGAAGGAAC
AGAGACCCCAGAGGGAACTGAGGGACCCGTAGGAACCGAGGAACCAGAGG
GAACTGAGGGACCTGTAGAAACCGACAGACCAGATGGAACAGAAGAACCA
ATTGAAACAGAAAGACCTCAGATAACCaaagCTGGCAAAATGGGTCAAGT
TCGTATTTGCGAAGATGACAGCAGGATCATTTCTTGTAAGAATGAAGGAA
AACTTCAAATCCTCGAAGGTTCTTACTATGGTCGCAAGATAAGCAAAGGT
TGCAAAAAATGGTATCATTACCATTGGAACACATCTTGCGGAGAAGCATC
AAGTAAAAGAATCATGTCCTTGAAATGTGATGGCAGAAAATCATGTGAAA
TCTCTTGCGACAATGAGTCATTTGAGGATCCTTGTTGGGGAACCAAAAAA
TACTGCTTAGTCAAATACAAATGTGCTTAAATGAAGGTTCTGTTGGCATT
CGTCGTTACAATTGTGTTGGCTAACGCAGCAAAACAATGCAAGGTTGACA
AGAAGTACAGAGTGGACTGTGGACATTCTCTTATCAAGAAAAGTGAATGT
GAACGTAAACATTGTTGTTGGAGTCCTTTGGAAGAAAATAGTAAAGAGCC
ATGGTGCTTCTTCCCTGGAAGAGCTGTTAATTTTgGTTTTCCAAACAGTT
TCTTTGGAACTGAAGCATCAGAAGGAACTGAGCAACCAGAAGAAACCGAA
GGACCCGGAGGAACACAAGAACAGGAAACACCACAAGGCCCATTTGTAAC
AGAGGGACCCgaaaaaacagaggaaccagaagagacagaaaaaccacaag
caacaaaaagaccatttaaaacagaGGCATCAGAAGGAACAGAGACCCCA
GAGGGAACTGAGGGACCCGTAGGAACCGAGGAACCAGAGGGAACTGAGGG
ACCTGTAGAAACCGACAGACCAGATGGAACAGAAGAACCAATTGAAACAG
AAAGACCTCAGATAACCaaagCTGGCAAAATGGGTCAAGTTCGTATTTGC
GAAGATGACAGCAGGATCATTTCTTGTAAGAATGAAGGAAAACTTCAAAT
CCTCGAAGGTTCTTACTATGGTCGCAAGATAAGCAAAGGTTGCAAAAAAT
GGTATCATTACCATTGGAACACATCTTGCGGAGAAGCATCAAGTAAAAGA
ATCATGTCCTTGAAATGTGATGGCAGAAAATCATGTGAAATCTCTTGCGA
CAATGAGTCATTTGAGGATCCTTGTTGGGGAACCAAAAAATACTGCTTAG
TCAAATACAAATGTGCTTAAATGAAGGTTCTGTTGGCATTCGTCGTTACA
ATTGTGTTGGCTAACGCAGCAAAACAATGCAAGGTTGACAAGAAGTACAG
AGTGGACTGTGGACATTCTCTTATCAAGAAAAGTGAATGTGAACGTAAAC
ATTGTTGTTGGAGTCCTTTGGAAGAAAATAGTAAAGAGCCATGGTGCTTC
TTCCCTGGAAGAGCTGTTAATTTTgGTTTTCCAAACAGTTTCTTTGGAAC
TGAAGCATCAGAAGGAACTGAGCAACCAGAAGAAACCGAAGGACCCGGAG
GAACACAAGAACAGGAAACACCACAAGGCCCATTTGTAACAGAGGGACCC
gaaaaaacagaggaaccagaagagacagaaaaaccacaagcaacaaaaag
accatttaaaacagaGGCATCAGAAGGAACAGAGACCCCAGAGGGAACTG
AGGGACCCGTAGGAACCGAGGAACCAGAGGGAACTGAGGGACCTGTAGAA
ACCGACAGACCAGATGGAACAGAAGAACCAATTGAAACAGAAAGACCTCA
GATAACCaaagCTGGCAAAATGGGTCAAGTTCGTATTTGCGAAGATGACA
GCAGGATCATTTCTTGTAAGAATGAAGGAAAACTTCAAATCCTCGAAGGT
TCTTACTATGGTCGCAAGATAAGCAAAGGTTGCAAAAAATGGTATCATTA
CCATTGGAACACATCTTGCGGAGAAGCATCAAGTAAAAGAATCATGTCCT
TGAAATGTGATGGCAGAAAATCATGTGAAATCTCTTGCGACAATGAGTCA
TTTGAGGATCCTTGTTGGGGAACCAAAAAATACTGCTTAGTCAAATACAA
ATGTGCTTAAATGAAGGTTCTGTTGGCATTCGTCGTTACAATTGTGTTGG
CTAACGCAGCAAAACAATGCAAGGTTGACAAGAAGTACAGAGTGGACTGT
GGACATTCTCTTATCAAGAAAAGTGAATGTGAACGTAAACATTGTTGTTG
GAGTCCTTTGGAAGAAAATAGTAAAGAGCCATGGTGCTTCTTCCCTGGAA
GAGCTGTTAATTTTgGTTTTCCAAACAGTTTCTTTGGAACTGAAGCATCA
GAAGGAACTGAGCAACCAGAAGAAACCGAAGGACCCGGAGGAACACAAGA
ACAGGAAACACCACAAGGCCCATTTGTAACAGAGGGACCCgaaaaaacag
aggaaccagaagagacagaaaaaccacaagcaacaaaaagaccatttaaa
acagaGGCATCAGAAGGAACAGAGACCCCAGAGGGAACTGAGGGACCCGT
AGGAACCGAGGAACCAGAGGGAACTGAGGGACCTGTAGAAACCGACAGAC
CAGATGGAACAGAAGAACCAATTGAAACAGAAAGACCTCAGATAACCaaa
gCTGGCAAAATGGGTCAAGTTCGTATTTGCGAAGATGACAGCAGGATCAT
TTCTTGTAAGAATGAAGGAAAACTTCAAATCCTCGAAGGTTCTTACTATG
GTCGCAAGATAAGCAAAGGTTGCAAAAAATGGTATCATTACCATTGGAAC
ACATCTTGCGGAGAAGCATCAAGTAAAAGAATCATGTCCTTGAAATGTGA
TGGCAGAAAATCATGTGAAATCTCTTGCGACAATGAGTCATTTGAGGATC
CTTGTTGGGGAACCAAAAAATACTGCTTAGTCAAATACAAATGTGCTTAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.13244	MSTRG.13244	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13244.1.p1	MSTRG.13244.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13244.1.p1.exon1	MSTRG.13244.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.1.p1.exon2	MSTRG.13244.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.1.p1.exon3	MSTRG.13244.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.1.p1.exon4	MSTRG.13244.1.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.1.p1.exon5	MSTRG.13244.1.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13244.1.p1.exon6	MSTRG.13244.1.p1.exon6	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000104_pilon	genome	sc0000104_pilon:292645..295621 +

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MSTRG.13244.1.p1 (mRNA) -