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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000103_pilon:1086392..1091996+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13218.2.p1 ID=MSTRG.13218.2.p1|Name=MSTRG.13218.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5605bp|location=Sequence derived from alignment at sc0000103_pilon:1086392..1091996+ (Clytia hemisphaerica_ch_hm2_pilon)
gttttaaggggtatccattGGTATTAACCACAATGTTTTCCTTAGTTATT
TCTGATCACCTGTCAACAGGTACATGGCTAGGAAACCATATGCATTACCT
GCGACACCATGACATAAACCCAAACCGTATCCTTTTTGTAACAAGCTGAG
CTCCCAGATGATATCGGAAAACCGCTGAGCTGCTTTCAGGTAAGTTTGGT
CATTATAAATCTGAAACAATAATACAGTAGAGATATAGAGATCTatttga
gatgccttggagtttttacaagatacttcactaattggtcatttaagggg
ctcccccaggggctggcgtgacgcgtgaatgacccttttttctgtcgtga
atacgtgaattggactttttcaacgcgtgaatacctgaattgagatatcc
gcgtgaacgtgaaaataagattttaccagcgtgaattcgtgaatcgagat
tttaagcgtgaacgtgaaaagcaaattattgtctaaaacaaaactgaata
aacctaaatatgtaaaattttcttgctcgcttcgctcgcagaATCCTTGA
TATCATATTGACCTATTATCATtctaaagttattcaaaataatcaaaaat
tgaaaaagaaacaaatacattttccttatttttccaaGGGCgcattttgt
gatgcaaatattgCATCCAGCGAAAGTGTTTTgagccaaaacaaaaaagt
ctaaatgagaaaattttcttcgtcggcgctaatgatggtcgtctttctgt
aatcgcttatattgttactaaatgcagtacacaaaatgataccgcaTGAA
CTTGGAGACAGTGAAGGGTATTTCATTCTTCGATAATTTACAAAAGTAGG
TAGATAGTTAATTTTATATGATCGCATCATCGaacattcagaaaaaaact
cttGTGACGCCGCACCGTGTAAGGCAGGTACGTcactcgccgtaccagat
ttgtaccagtaaatggtcagtgttgaaaACAATCAAAGATTCTGAATGAA
TAGATTGACCAAAAAAGGCATATTAGGGTAACAATAGTGTGTTAAGGCCG
TTTTCTCAGCAATGAAAGAGtgaaagttgtcaaaaaattttcgcgctcgc
ttcgctcgctttttccTATCCACAGCTTTTCTTCCATGCGACAGGGGGTC
AAACTTTGGAATTTGCGTCCTCTGGTTGTACCACCTCTTTGAAGCTCCCG
ACTTTCCAGACCATGAATTTGGGCCAAACCTCgatttaaatttattctca
aaataaaatatatttagggCCTGCGACGAAGAAAATTCGGGGGGAAACCT
TAAAGCTAAGGCTTAACTTTGCACTTACCTcccttaaaaagcaaattcag
gCAGCGTTTATACCACCGTACGCCAGAGAGGtagttttttgtaactttgg
cgtGATAGACGTGATAGACAGACCTTAAACATTGCCCTATGAAAGCTCCA
ATAATTGTAAGAGGTCTTAAAAGGTCGACGCTGTCGAGAATAAGGtaaaa
aaactgcagaaaactttatttattttttattcatagaattatatttcaca
ggtctatcgacctctacgaaataatttaagatttataaattgtctaattc
ttcatctgtcgtccagtcgtcagaagatatggacagaagagaagacgttg
ttttggtctttgtcctaggttttcgaactaggcgaaggtttgttctaggg
cttcctcttacatgccaaacgaaatcgtcattttttgaattcattttttt
cgccttttggcacatatctttaataatttttctttcgttgatggtgaagt
cgtctgtgatgctaaagccaccaatttcattgaatcgtttcagcttatgc
agattttgcattatccgttctttttcctctatactttttaagatcaactt
gattggacgccaatgtagcccttttcggttttgtccaatgcgatgatggt
gggacggtttgatatcttgaacgccaatgttacctagtataccttcaata
tcttttttgtcttgttcctgttgttcctctttgttatctacctctaattc
catcattccatgtataataatatttcgttttcttgattcgatgtctcttt
cttcattcttgttttcttgttggtgttctctcactgctgatttgaaatta
tccttgtgtttcttagttatttcatcgtgtgttttttctgatgttttctc
tatgtaattcgtcgtttgctttatttcttcttttataatctgcttggttt
ttatttcaaagtcagccatcttattggttaagatgttttcgatatcgttc
ttaaggctgcggttcttggctagctggtttttgagctttttaatgacgtc
gtccttcttctcaatctccctctgcatcatatgatacgagttctcaccta
ttttactcattagagatcgtgttatccgcacgcaattctgacatagatat
tgttcgttataagtgttggcaaaaatttgcagctgataaagcggtaattg
tgtgcactcgtagtgtaccatgcggtggcattttcggcattttagacggt
tttggtcatcatcatctgagcaggaggtgggagtgcatgtttggttttgt
ttagcttcttcaaatggttgtttttcttgctttttgtcggttttttctaa
atttcaaccatttttgaagaactacacaaaatgcgtgttgactaactgac
gtcaaataaaaactgttggccataaaaaggtcaaatttagcccaataagg
ttacaatcgtttaacaaaagaattaaaagcaaaatcagcgcgtcaacgtg
aaaatggtttttttcgcgcgtgaatgcgtgaatgagcaaaaaattttgcg
tgaatacgtgaattgagggtcgactgggggggggggggctcatttaaagt
gatagagatgacgcgttctttagaaaaagtaataagattcttttattaca
tcttaacgaccaaccaaatcaaataagagcttgtaaaaactctaaCTTGT
CCCATCTATTTACATTCACAATCATGTTATCATAAAATAACATCTTTAAA
TACATCAAATCATTTTAAAGTATTTCATGATATTAGCATTATATCCACAT
CTATGCAGCTCTTGTTTTGTATATTACTATTAGTTGTGGCCATAAAAACT
TACTAAAATAGATTAAGAATGGCTGAGTGTACGTGCTAGTCTAATAAATA
GGTTTCCATTCATATAAAACATGTAACTGAAAATATCACTTATTGCATTT
TGTAAGATTAATTCATTATAAATCTTATCATTTTTGCTGGTCAGTCAAGC
TGAGATTTAAAGGTctatctttcattttaaattcttAACATATTACAATA
TGAAAGCATAAATATGCAGTTTTttattggaaaatattttataggAAAAA
GTGGCTGGAAATCTAACCAAAGCTTGAACCTAGATACATTGAGTGCAAGA
AAACGCTTAAAATTTTATCCCtttttttggttttgtgtgaaaaaaaatta
aatgcatTTGCTGAAAATCACGAGGAATTAAGAACAGCAGAACAGTCAAA
AGGGTTATGACAATGTTCTTATTTACAGTGAACATACAATTGGATTTTCA
CTGCAATACATAGAATGTATAAACTCAGCGAAAAAGGTTGTAAGATTGta
atcttttatctttttttacataaaaagcAGAGCATGAATGTAATTCTATG
GCATGACTAATTTCATTCAGATTTTTAGGGTGTAGTGATCATTCGAGTTT
CAAACTTTCTGCAGAAAAGAGTGCTCGTAAATGTATTTCAACAATCTTTA
GCTTTCTAAGAGGGGTGGGTGAGGCACTTTTTTAAAGTCCGGTGTGGGGG
TGGGGGTAGTCAAGGTAAGTTATCTACCCTATGTAGATGCGAGCTTTAAG
GGTCAGTTCACTTCAGTCAGCATTAAAGAGTTGATAATGCACAGGGGACG
AGTTTGGTGGGTCTGGTTACGAGATTGAATAACTTTTGCAGACTTTCCTG
AaatagtttcaaaatttcttttcatatttAGCAATATACTGGGAAGTTTT
TCGCAATGAATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCAT
TTTGTCGATTTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAG
AGCAAGAGCCATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCT
TTATTGAAGATGAGGGACAATTACAAGATTTGTTCCAAGAAATCCAGACa
ggtattaaccctttaagtagcAATGCCGAGTATACTAGATatgggcgaag
ccctcctgtataGCCCattttgagttagaaatcgtcatgttttatggtca
agcaaaaaataaaatcaaaagtgagtctttccagcgagattttaagccaa
aaagtcaaaaaaatgcaaaaatttgacaaaaatccactttttttagattt
tgaccatttttggttagcgagtgatccaagaacctccaaaattgaccctg
ctttacttgattctattctctagcgaattaatttgaagttttactactgG
GCACTTTCCTATCACTcaggcctgactgctttaattcacCTAGCCTACCT
TTACCACCGCCCACCCCGACATTCCTTAAttgggcggcgccgaaggcgca
taaaagaaagaagagactctcgGCTATCCAACGATCTGTAAACGAGCGag
ctagcgattttctttaaaaaaatttaaaacaaatgaccgtggtacttaaa
gggttaaattgGACTATTCAAGGAAACAATTCGAAGCCTGGGACCGAAGG
CTTAATGTTGCGAAGAGTTTAtttttttGGGAGGTCGAAAACTGGGTGAA
AACAGTTAGAGTGCACGTGGGTTTAACTCGCTAAAGTTTAGCTTTTAGTG
AGTTTAACTATCGTCgcttttatttaaagttttattgGAGAAAAAGTTCT
TCGTAAAACTTTCCATGgcaaaaaaacatattcaattctACCAATGCTTT
CTTTTATAGGAATTAAACAATTGGCACAATTTCCGTCCACAGCTAATGCC
GTTGCCGAGAAGAAAGCCAACCTGCTTTCTAACAAGCAATTTCTGTGCAT
CACAACAAACCAAGATGGTTCCATTGATAAAGCTTTGGGTCGACAAAGAG
TCTATCTTGGTTTCACAGCAAATTCAGTTTTGAACCATTTGGCTATGACA
GTTaactaaattatgacgtcactaaaCTTCTTAAAAGACTTTCGTCAAGA
TGGTGTATAATGTAAAAGTGCACATTGAATATAAAAATCACTAGCCTGCA
TCATATCAAGCCTGTAAACTTAGTTTTCTATagaagaaccagtaaatttt
tgatgagaatttttttgcACATTTAGCCTAATATTGTTTTTACCCTGTTC
CTTATTTCTAGTGCAAAATTGAAGTATTCTAGGTTTGGTactatttttta
attaaatttaacTCCAATTTAACTCATAATTCGCGTGAAATTTAGCCATT
CTGGTCTCAGCATTGTTTATaaattcttcttatttttgtcattttaagct
ttgtaattttttttcatatgttATAATTGATGATTCTGAAAAGATGAAAC
AAACA Coding sequence (CDS) from alignment at sc0000103_pilon:1086392..1091996+ >MSTRG.13218.2.p1 ID=MSTRG.13218.2.p1|Name=MSTRG.13218.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000103_pilon:1086392..1091996+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGT
CGATTTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAA
GAGCCATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATT
GAAGATGAGGGACAATTACAAGATTTGTTCCAAGAAATCCAGACagGAAT
TAAACAATTGGCACAATTTCCGTCCACAGCTAATGCCGTTGCCGAGAAGA
AAGCCAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAA
GATGGTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTT
CACAGCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTaactaaATGA
ATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGTCGAT
TTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAAGAGC
CATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATTGAAG
ATGAGGGACAATTACAAGATTTGTTCCAAGAAATCCAGACagGAATTAAA
CAATTGGCACAATTTCCGTCCACAGCTAATGCCGTTGCCGAGAAGAAAGC
CAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAAGATG
GTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTTCACA
GCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTaactaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103_pilon | genome | sc0000103_pilon:1086392..1091996 + |
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