MSTRG.13218.1.p1 (mRNA) -

Overview


Name	MSTRG.13218.1.p1
Unique Name	MSTRG.13218.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000103_pilon:1084179..1091996+
coding sequence from alignment at sc0000103_pilon:1084179..1091996+

mRNA from alignment at sc0000103_pilon:1084179..1091996+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.13218.1.p1 ID=MSTRG.13218.1.p1|Name=MSTRG.13218.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7818bp|location=Sequence derived from alignment at sc0000103_pilon:1084179..1091996+ (Clytia hemisphaerica_ch_hm2_pilon)
tcatttgtcAACTTCCATAACCTTTATTGctttcatttttcagaaaaatt
tattcaGAGTTAAGTTTCCGTTCCAATACTTGATAGTTTggatactttta
aaaaattttcatgacgtcagcaATCAGGTGGTTTTTAGGTGTGTCGCcgt
caattatttttcaaaatatcatcaAGGATGCCTGTACTAAGTTTCATACT
TTTTCCACCATATGCAGTATTGTTATGCTTAGCTACCTGGCTAAGAGGTA
CCTTTTGGGTTCTAGAACCAGATATTACCCGTTAAAAgtttttgacctct
tttttgattttttatgatgacgtcatttttagtactaaaagaatatttaa
gtAAATATATTATACCTATTTTGTGTAACCAATTTAATCAGTATTGTATA
ACTATAGTATAtggcttcaaaataaaaataaattgaaataaatctCAATA
CTTCAATCTACACTTTTGAGAttctccggggggggggttcacaAAAGGGG
TGATATTCACTGGGTGGGAAAATTCACCAGGGGAGATTTTCCGGACATCA
CTATACGTTTTTGCAACAGATGACATTGGCAAACAGCAAACTGCTGAGCA
GCTTCCAGATAAGTTTGATCTTAATAAACCCAAAAAATATAGGCGGTTAT
AGACCATGTCGAGGAAGAGATttataattgtaatttcattgctttttaac
gagcgttgcacttcTTTGCAGGTTTCTGACCctgacgtacttgctctatt
gtcttaaatccgccagtggaAGTTATCtgtatagtagggggaaatttgtt
cgttttttttttgaggtcgcacgatttttttagtcaaagcacttgttata
catttttggaaagcaaaggggtaggggaatcaaaataatttgggtgccaa
ttttttttcggacactttcgtgtgattttcggacaaatatgacggtctca
ggcaaaaattatagggtcaaaaattaattaaaattttagcttgagaaagt
agagacctgttgtatatttttggaaagctctcaaaaaatcaagACAGGGA
TATATTGCAAGTAAAGGTGATTTCTCTacttaactcgagatattaaccct
taaaaacagtgttttcagccagaaacagctgttgtgtccagtttttgcgc
ttttagAAGctcaagggaagaaattttggcaagaaATTCATTtgcagaaa
aagttttttcagtgGGAATTTGGCGGATCaacaatgaaattaattttggt
gggactTTATTTGATAGAGTATGAGTTTCAAGGTTCAAAATATGAGGTCG
AATTTGGGGCCGAATCCGCCAAATTTCCTTTCCGCCAAAATGTCTGCCCT
TAAGGTAATTTTAaccatgaaattttgaataactgaGTGTATGTGCTAGG
CTAATAAATGGGATTCTATCCATATTTTATTCTATTGAAACGTAACCAAA
AATATCACTGTAGGACTATTTATTGCATTTTGTAAAATTAATTCATCATA
AATCTTATCAGTTTTGCTGGTCCGTCAAGCtgagatttaaaagttttttt
tttcattttaaattcttaacatattacaacataattttttattagaaaat
attttatagaAATAAGTGGCCGGAAATCTGACCAAAGCTTGAACCTATAA
CAGGTTTTGACCCTTCAAAaccgttttttgacaaaaaacaggCGCGATTG
CATTATGGgctgaaatcctgaaaaatacaaatattgttttggtaatggat
ttctagcaagtatttgatcaatcGAATCACGGTTTAGCacttgaatttca
atttcacaGTTTCAGTAAGTTGTAAGCAAGGAgtcaatgtttgtaggttt
taagttgtaatagtttaggttttaaggtgtattttgattttaacgtacag
ttttgaaaatatttaggtactaATGATCTGATTGTAACAATAGTAACTTT
GCTGCGagtcactgttcaaaatttgaaaccaaaaaaggactatttaaaaa
aaggttatcccagaaaaaccattttgtaggttttaaggggtaaatggcta
aaactgcactttttcacttcctcgtgatAAATTGAAAACtggtttctaca
aaacatcactgttAGGGAAAAAACTATGGACAtggtactttcaacacaaa
aaatttcagcctcaaatacCACATAAATGTTTACGAGTTAGAGGGTACCT
ctattttttgtaggttttaaggggtatccattGGTATTAACCACAATGTT
TTCCTTAGTTATTTCTGATCACCTGTCAACAGGTACATGGCTAGGAAACC
ATATGCATTACCTGCGACACCATGACATAAACCCAAACCGTATCCTTTTT
GTAACAAGCTGAGCTCCCAGATGATATCGGAAAACCGCTGAGCTGCTTTC
AGGTAAGTTTGGTCATTATAAATCTGAAACAATAATACAGTAGAGATATA
GAGATCTatttgagatgccttggagtttttacaagatacttcactaattg
gtcatttaaggggctcccccaggggctggcgtgacgcgtgaatgaccctt
ttttctgtcgtgaatacgtgaattggactttttcaacgcgtgaatacctg
aattgagatatccgcgtgaacgtgaaaataagattttaccagcgtgaatt
cgtgaatcgagattttaagcgtgaacgtgaaaagcaaattattgtctaaa
acaaaactgaataaacctaaatatgtaaaattttcttgctcgcttcgctc
gcagaATCCTTGATATCATATTGACCTATTATCATtctaaagttattcaa
aataatcaaaaattgaaaaagaaacaaatacattttccttatttttccaa
GGGCgcattttgtgatgcaaatattgCATCCAGCGAAAGTGTTTTgagcc
aaaacaaaaaagtctaaatgagaaaattttcttcgtcggcgctaatgatg
gtcgtctttctgtaatcgcttatattgttactaaatgcagtacacaaaat
gataccgcaTGAACTTGGAGACAGTGAAGGGTATTTCATTCTTCGATAAT
TTACAAAAGTAGGTAGATAGTTAATTTTATATGATCGCATCATCGaacat
tcagaaaaaaactcttGTGACGCCGCACCGTGTAAGGCAGGTACGTcact
cgccgtaccagatttgtaccagtaaatggtcagtgttgaaaACAATCAAA
GATTCTGAATGAATAGATTGACCAAAAAAGGCATATTAGGGTAACAATAG
TGTGTTAAGGCCGTTTTCTCAGCAATGAAAGAGtgaaagttgtcaaaaaa
ttttcgcgctcgcttcgctcgctttttccTATCCACAGCTTTTCTTCCAT
GCGACAGGGGGTCAAACTTTGGAATTTGCGTCCTCTGGTTGTACCACCTC
TTTGAAGCTCCCGACTTTCCAGACCATGAATTTGGGCCAAACCTCgattt
aaatttattctcaaaataaaatatatttagggCCTGCGACGAAGAAAATT
CGGGGGGAAACCTTAAAGCTAAGGCTTAACTTTGCACTTACCTcccttaa
aaagcaaattcaggCAGCGTTTATACCACCGTACGCCAGAGAGGtagttt
tttgtaactttggcgtGATAGACGTGATAGACAGACCTTAAACATTGCCC
TATGAAAGCTCCAATAATTGTAAGAGGTCTTAAAAGGTCGACGCTGTCGA
GAATAAGGtaaaaaaactgcagaaaactttatttattttttattcataga
attatatttcacaggtctatcgacctctacgaaataatttaagatttata
aattgtctaattcttcatctgtcgtccagtcgtcagaagatatggacaga
agagaagacgttgttttggtctttgtcctaggttttcgaactaggcgaag
gtttgttctagggcttcctcttacatgccaaacgaaatcgtcattttttg
aattcatttttttcgccttttggcacatatctttaataatttttctttcg
ttgatggtgaagtcgtctgtgatgctaaagccaccaatttcattgaatcg
tttcagcttatgcagattttgcattatccgttctttttcctctatacttt
ttaagatcaacttgattggacgccaatgtagcccttttcggttttgtcca
atgcgatgatggtgggacggtttgatatcttgaacgccaatgttacctag
tataccttcaatatcttttttgtcttgttcctgttgttcctctttgttat
ctacctctaattccatcattccatgtataataatatttcgttttcttgat
tcgatgtctctttcttcattcttgttttcttgttggtgttctctcactgc
tgatttgaaattatccttgtgtttcttagttatttcatcgtgtgtttttt
ctgatgttttctctatgtaattcgtcgtttgctttatttcttcttttata
atctgcttggtttttatttcaaagtcagccatcttattggttaagatgtt
ttcgatatcgttcttaaggctgcggttcttggctagctggtttttgagct
ttttaatgacgtcgtccttcttctcaatctccctctgcatcatatgatac
gagttctcacctattttactcattagagatcgtgttatccgcacgcaatt
ctgacatagatattgttcgttataagtgttggcaaaaatttgcagctgat
aaagcggtaattgtgtgcactcgtagtgtaccatgcggtggcattttcgg
cattttagacggttttggtcatcatcatctgagcaggaggtgggagtgca
tgtttggttttgtttagcttcttcaaatggttgtttttcttgctttttgt
cggttttttctaaatttcaaccatttttgaagaactacacaaaatgcgtg
ttgactaactgacgtcaaataaaaactgttggccataaaaaggtcaaatt
tagcccaataaggttacaatcgtttaacaaaagaattaaaagcaaaatca
gcgcgtcaacgtgaaaatggtttttttcgcgcgtgaatgcgtgaatgagc
aaaaaattttgcgtgaatacgtgaattgagggtcgactgggggggggggg
gctcatttaaagtgatagagatgacgcgttctttagaaaaagtaataaga
ttcttttattacatcttaacgaccaaccaaatcaaataagagcttgtaaa
aactctaaCTTGTCCCATCTATTTACATTCACAATCATGTTATCATAAAA
TAACATCTTTAAATACATCAAATCATTTTAAAGTATTTCATGATATTAGC
ATTATATCCACATCTATGCAGCTCTTGTTTTGTATATTACTATTAGTTGT
GGCCATAAAAACTTACTAAAATAGATTAAGAATGGCTGAGTGTACGTGCT
AGTCTAATAAATAGGTTTCCATTCATATAAAACATGTAACTGAAAATATC
ACTTATTGCATTTTGTAAGATTAATTCATTATAAATCTTATCATTTTTGC
TGGTCAGTCAAGCTGAGATTTAAAGGTctatctttcattttaaattcttA
ACATATTACAATATGAAAGCATAAATATGCAGTTTTttattggaaaatat
tttataggAAAAAGTGGCTGGAAATCTAACCAAAGCTTGAACCTAGATAC
ATTGAGTGCAAGAAAACGCTTAAAATTTTATCCCtttttttggttttgtg
tgaaaaaaaattaaatgcatTTGCTGAAAATCACGAGGAATTAAGAACAG
CAGAACAGTCAAAAGGGTTATGACAATGTTCTTATTTACAGTGAACATAC
AATTGGATTTTCACTGCAATACATAGAATGTATAAACTCAGCGAAAAAGG
TTGTAAGATTGtaatcttttatctttttttacataaaaagcAGAGCATGA
ATGTAATTCTATGGCATGACTAATTTCATTCAGATTTTTAGGGTGTAGTG
ATCATTCGAGTTTCAAACTTTCTGCAGAAAAGAGTGCTCGTAAATGTATT
TCAACAATCTTTAGCTTTCTAAGAGGGGTGGGTGAGGCACTTTTTTAAAG
TCCGGTGTGGGGGTGGGGGTAGTCAAGGTAAGTTATCTACCCTATGTAGA
TGCGAGCTTTAAGGGTCAGTTCACTTCAGTCAGCATTAAAGAGTTGATAA
TGCACAGGGGACGAGTTTGGTGGGTCTGGTTACGAGATTGAATAACTTTT
GCAGACTTTCCTGAaatagtttcaaaatttcttttcatatttAGCAATAT
ACTGGGAAGTTTTTCGCAATGAATATCAACAACTTAACATCCCCGAATTT
CCGAACTCATCATTTTGTCGATTTACGCGCAGGAAGACCTGCTCGATTCA
ATCACGTTGCAAGAGCAAGAGCCATCCACCAAGCACGAAACTCAGCCAAA
AACACTGTTGTCTTTATTGAAGATGAGGGACAATTACAAGATTTGTTCCA
AGAAATCCAGACaggtattaaccctttaagtagcAATGCCGAGTATACTA
GATatgggcgaagccctcctgtataGCCCattttgagttagaaatcgtca
tgttttatggtcaagcaaaaaataaaatcaaaagtgagtctttccagcga
gattttaagccaaaaagtcaaaaaaatgcaaaaatttgacaaaaatccac
tttttttagattttgaccatttttggttagcgagtgatccaagaacctcc
aaaattgaccctgctttacttgattctattctctagcgaattaatttgaa
gttttactactgGGCACTTTCCTATCACTcaggcctgactgctttaattc
acCTAGCCTACCTTTACCACCGCCCACCCCGACATTCCTTAAttgggcgg
cgccgaaggcgcataaaagaaagaagagactctcgGCTATCCAACGATCT
GTAAACGAGCGagctagcgattttctttaaaaaaatttaaaacaaatgac
cgtggtacttaaagggttaaattgGACTATTCAAGGAAACAATTCGAAGC
CTGGGACCGAAGGCTTAATGTTGCGAAGAGTTTAtttttttGGGAGGTCG
AAAACTGGGTGAAAACAGTTAGAGTGCACGTGGGTTTAACTCGCTAAAGT
TTAGCTTTTAGTGAGTTTAACTATCGTCgcttttatttaaagttttattg
GAGAAAAAGTTCTTCGTAAAACTTTCCATGgcaaaaaaacatattcaatt
ctACCAATGCTTTCTTTTATAGGAATTAAACAATTGGCACAATTTCCGTC
CACAGCTAATGCCGTTGCCGAGAAGAAAGCCAACCTGCTTTCTAACAAGC
AATTTCTGTGCATCACAACAAACCAAGATGGTTCCATTGATAAAGCTTTG
GGTCGACAAAGAGTCTATCTTGGTTTCACAGCAAATTCAGTTTTGAACCA
TTTGGCTATGACAGTTaactaaattatgacgtcactaaaCTTCTTAAAAG
ACTTTCGTCAAGATGGTGTATAATGTAAAAGTGCACATTGAATATAAAAA
TCACTAGCCTGCATCATATCAAGCCTGTAAACTTAGTTTTCTATagaaga
accagtaaatttttgatgagaatttttttgcACATTTAGCCTAATATTGT
TTTTACCCTGTTCCTTATTTCTAGTGCAAAATTGAAGTATTCTAGGTTTG
GTactattttttaattaaatttaacTCCAATTTAACTCATAATTCGCGTG
AAATTTAGCCATTCTGGTCTCAGCATTGTTTATaaattcttcttattttt
gtcattttaagctttgtaattttttttcatatgttATAATTGATGATTCT
GAAAAGATGAAACAAACA

Coding sequence (CDS) from alignment at sc0000103_pilon:1084179..1091996+

>MSTRG.13218.1.p1 ID=MSTRG.13218.1.p1|Name=MSTRG.13218.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000103_pilon:1084179..1091996+ (Clytia hemisphaerica_ch_hm2_pilon)
catttgtcAACTTCCATAACCTTTATTGctttcatttttcagaaaaattt
attcaGAGTTAAGTTTCCGTTCCAATACTTGATAGTTTggatacttttaa
aaaattttcatgacgtcagcaATCAGCAATATACTGGGAAGTTTTTCGCA
ATGAATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGT
CGATTTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAA
GAGCCATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATT
GAAGATGAGGGACAATTACAAGATTTGTTCCAAGAAATCCAGACagGAAT
TAAACAATTGGCACAATTTCCGTCCACAGCTAATGCCGTTGCCGAGAAGA
AAGCCAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAA
GATGGTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTT
CACAGCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTaactaacatt
tgtcAACTTCCATAACCTTTATTGctttcatttttcagaaaaatttattc
aGAGTTAAGTTTCCGTTCCAATACTTGATAGTTTggatacttttaaaaaa
ttttcatgacgtcagcaATCAGCAATATACTGGGAAGTTTTTCGCAATGA
ATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGTCGAT
TTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAAGAGC
CATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATTGAAG
ATGAGGGACAATTACAAGATTTGTTCCAAGAAATCCAGACagGAATTAAA
CAATTGGCACAATTTCCGTCCACAGCTAATGCCGTTGCCGAGAAGAAAGC
CAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAAGATG
GTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTTCACA
GCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTaactaacatttgtc
AACTTCCATAACCTTTATTGctttcatttttcagaaaaatttattcaGAG
TTAAGTTTCCGTTCCAATACTTGATAGTTTggatacttttaaaaaatttt
catgacgtcagcaATCAGCAATATACTGGGAAGTTTTTCGCAATGAATAT
CAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGTCGATTTAC
GCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAAGAGCCATC
CACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATTGAAGATGA
GGGACAATTACAAGATTTGTTCCAAGAAATCCAGACagGAATTAAACAAT
TGGCACAATTTCCGTCCACAGCTAATGCCGTTGCCGAGAAGAAAGCCAAC
CTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAAGATGGTTC
CATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTTCACAGCAA
ATTCAGTTTTGAACCATTTGGCTATGACAGTTaactaa

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.13218	MSTRG.13218	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13218.1.p1.exon1	MSTRG.13218.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13218.1.p1.exon2	MSTRG.13218.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13218.1.p1.exon3	MSTRG.13218.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13218.1.p1	MSTRG.13218.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000103_pilon	genome	sc0000103_pilon:1084179..1091996 +

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MSTRG.13218.1.p1 (mRNA) -