MSTRG.13217.1.p1 (mRNA) -

Overview
NameMSTRG.13217.1.p1
Unique NameMSTRG.13217.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000103_pilon:1080970..1083928+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13217.1.p1 ID=MSTRG.13217.1.p1|Name=MSTRG.13217.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2959bp|location=Sequence derived from alignment at sc0000103_pilon:1080970..1083928+ (Clytia hemisphaerica_ch_hm2_pilon)
gaaagaaaaaaacaacgatggCGTCTATATGTCAAAAAATACTGTTACTT
GGGCCAAGTCGAATTGATCCTACAAAATGTCATCCAGGAAGTTCGTTATA
TGCACAAATAAAACGAAATGGTGAAATGACATTGCAGCGTCAACAAAGAC
AATTTAATTTGGGGAATTCGGAAACATTCTCTGATCCTATCATAGCAGCC
GACTATCTTCTTGAAAGGGAATACGGCGAAACAGCACTTTTTGACACTAC
TCAACATGGAGCTGTCTTTATACCTCCAACGTTTATGTCGTACCAGTATA
AAAAGAAATCGACTGTTGCAGTTCTTGATTATGATGTaaaaaaaGACATC
GAAAGACTTTTGCATAATTTGTTGCACCATTCACCGAATTATTGGTTCAC
AACTGATTTGCGAGATTTTATAAGCTCGCAAGGCTTTGGTGATACGATTG
ATCAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAAATTAAGTATCTA
ATTATGCAAGAACTCAATACAGATGAAGTTTGCTTACCACCAATAACTCT
TGAGCCTGACGTATTTATAAAAGGTTGCATCCAAgaaatttgctcgaaat
caaTTAAAACATCAATGATAATCCTGTTGGGTGAATATTCAAACATCCCA
TTTAAAAGACTATTAAGGCAGAAAGTTGACGAAAACCCTCCAACTGATTC
CAATCTTCGATGGCTTTTTGACTTAGAGATATCAGAGCTAGgagaaaaag
ttcaaaatgaatTCTATGATAAACTTTCATCATTACAGGATGATGATGTT
CTCAGTGACACAGTTGTTCTTTCTTCGATCGGTTTTATAACAAACGTTCG
AAATAGGATGCAACAGgaattggattttttcattaTATCATGGCCACGAA
AGCTAATTATCTGCATAGAATCGAAACGTACTATTACTGACAGGATTTTC
GAGCAGCTGGAAATGCATCAATTTTTGTTGGAAACAAAATTTGGCGACCA
ACTTGGACATGGATGGACCTTTTTCCCAGttattttgtctgaatttgata
aattttcattttccagtcGTCACTACATCACAACCTGCACAGACATCAAA
TCATGGTTGGTGAGTATTTTTCAACATTATCCAGTAGTTCCAATGTGGAC
TACGTTCAATAATACACTTAGCCAAACTAAAGATGTATTAAGATTGATTA
TTTTTACATTACATGCATCGAAACACGCACCAATAACCACCACAAATTGG
GTTGAATACATCAATTCAGCCATCGATAATGTAGCTACCAGTGACAATAT
CCTGTTTTACTCCAAGGAGCAATTAGCGGTGATGTCCTTAGATAACGATA
AATACAATAAATTAATTATCACGGCTGGTTGGGGTACTGGAAAAAGTCTT
TTGCTCACCAACAAAGCTATTCAAATGAATTCGGATCCTTATTACAAAGA
GAGAGTTATGTATGTGCTCGCAAACGGACCTTTCAAGGGAATAAATACAA
TGCTATATCATCGGTTGAAATTTGATTTGGAGAAGAATCATGGAATCTTT
GTCaaagaaattgctaaaaaagTAAGTCACAAGAGAAGATTCGCGATAAA
AATTATCTAGtgtcaaaagtatcaaaagtagTACCATGTTAGCAGTATAG
TGCCAGGGGCTACTTCGCGCAAAATAAGAAGGGTCGTGACTTTATTATTG
AAAAATTCATAATAACATTCCTCTAATTAGTACTAACCCTCAAGATCCGT
GGTTATTTGATTAGATGATtagtctattttttttttttaatgttttcctA
TTCTATAACCTCTCGTTTCCAATAAGAatttaaagtcattttttgacttg
aaagcTAATCGAGCCTATACCTTACCATCtaaatgtgaaaaaaagtttgt
tctCTTAGAATATGCTtatcaatagacgatatcggctttacgTATTCTCC
CCGAATgcttacccatgatgcattgcgcaaaaaaaaaatcacggacaata
ttgacatactgaatttttttgcgcaatgcatcatgggtaatcattcgggg
agaatttcgttaagccgatatcgtccaTTCAGGAAAATTATTCGATGACC
CCCAAATTTCGTTAAAATCATTCCCTTACAAATTCAATTAAAGGGCGTCA
GCTGCGTGTAACGTTTATTCCAAATACTAGCGAATTTCAATGATTGTCAT
TATAGGGTGGAAGCCGTACAGATTTATTGGACGATATCAAACAGCATAAA
GCAAAAGCGATGTTTATAGACGAGTTCGACTTAAGAACGGGAGACGAAAC
AGTCAATAAAATATTGGAACTTTGTGACATGGTATGGATAGTCCCATCAA
CGGAATCTATGTATTTTAATGACAATTGCAATGGCTTTAAGGAGCAATTT
ACAACTTTAAACCTCTCACACAATTTTAGAAATTGTCGAAGTGTCGTGAA
ATCGACAAAGATGGTTGCGGATGAAACAGACTACCTATTTAAAGAAGGTA
TAGTGATGCCTCCATCAAATTTCCCCTCTGGTACAGCACCGACCGTTATG
TTCGTTAGGTCAATACGAGACGCAGTATCCAGATCACGGAAGATAACCAT
GGCAGGGATCTTGGTAATAAAAAACGATTTCAATTGGAATCAGGCTGATA
TCGAAATGCTCAatgatttgaatgaaaattggAAGATTTACAGTTTTGAT
CAAAACGATTTTCAGCATAACGACAACCCATACACATTTCTCCAGGATgg
aaatattttggtaattgaTGGTTTTCTGGCTATAGGCTTTGAGTGGCCAG
TGGTGATCGTGTTTGAAGATATGAGTAATGATGTAACTTATCATGAATGC
AATTATATGATGAGGTGTTCCACTAACCTTCTAATTGTaaaaaaaCCGTC
CCAGTGTCGTCCATGACGACTTTTTTAACTTCgcttgcttttttatttct
ctttgaaat

Coding sequence (CDS) from alignment at sc0000103_pilon:1080970..1083928+

>MSTRG.13217.1.p1 ID=MSTRG.13217.1.p1|Name=MSTRG.13217.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4560bp|location=Sequence derived from alignment at sc0000103_pilon:1080970..1083928+ (Clytia hemisphaerica_ch_hm2_pilon)
aagaaaaaaacaacgatggCGTCTATATGTCAAAAAATACTGTTACTTGG
GCCAAGTCGAATTGATCCTACAAAATGTCATCCAGGAAGTTCGTTATATG
CACAAATAAAACGAAATGGTGAAATGACATTGCAGCGTCAACAAAGACAA
TTTAATTTGGGGAATTCGGAAACATTCTCTGATCCTATCATAGCAGCCGA
CTATCTTCTTGAAAGGGAATACGGCGAAACAGCACTTTTTGACACTACTC
AACATGGAGCTGTCTTTATACCTCCAACGTTTATGTCGTACCAGTATAAA
AAGAAATCGACTGTTGCAGTTCTTGATTATGATGTaaaaaaaGACATCGA
AAGACTTTTGCATAATTTGTTGCACCATTCACCGAATTATTGGTTCACAA
CTGATTTGCGAGATTTTATAAGCTCGCAAGGCTTTGGTGATACGATTGAT
CAAAAGTATTTCAGTAAATGGATCCTGAATCTTAAAATTAAGTATCTAAT
TATGCAAGAACTCAATACAGATGAAGTTTGCTTACCACCAATAACTCTTG
AGCCTGACGTATTTATAAAAGGTTGCATCCAAgaaatttgctcgaaatca
aTTAAAACATCAATGATAATCCTGTTGGGTGAATATTCAAACATCCCATT
TAAAAGACTATTAAGGCAGAAAGTTGACGAAAACCCTCCAACTGATTCCA
ATCTTCGATGGCTTTTTGACTTAGAGATATCAGAGCTAGgagaaaaagtt
caaaatgaatTCTATGATAAACTTTCATCATTACAGGATGATGATGTTCT
CAGTGACACAGTTGTTCTTTCTTCGATCGGTTTTATAACAAACGTTCGAA
ATAGGATGCAACAGgaattggattttttcattaTATCATGGCCACGAAAG
CTAATTATCTGCATAGAATCGAAACGTACTATTACTGACAGGATTTTCGA
GCAGCTGGAAATGCATCAATTTTTGTTGGAAACAAAATTTGGCGACCAAC
TTGGACATGGATGGACCTTTTTCCCAGttattttgtctgaatttgataaa
ttttcattttccagtcGTCACTACATCACAACCTGCACAGACATCAAATC
ATGGTTGGTGAGTATTTTTCAACATTATCCAGTAGTTCCAATGTGGACTA
CGTTCAATAATACACTTAGCCAAACTAAAGATGTATTAAGATTGATTATT
TTTACATTACATGCATCGAAACACGCACCAATAACCACCACAAATTGGGT
TGAATACATCAATTCAGCCATCGATAATGTAGCTACCAGTGACAATATCC
TGTTTTACTCCAAGGAGCAATTAGCGGTGATGTCCTTAGATAACGATAAA
TACAATAAATTAATTATCACGGCTGGTTGGGGTACTGGAAAAAGTCTTTT
GCTCACCAACAAAGCTATTCAAATGAATTCGGATCCTTATTACAAAGAGA
GAGTTATGTATGTGCTCGCAAACGGACCTTTCAAGGGAATAAATACAATG
CTATATCATCGGTTGAAATTTGATTTGGAGAAGAATCATGGAATCTTTGT
CaaagaaattgctaaaaaaGGTGGAAGCCGTACAGATTTATTGGACGATA
TCAAACAGCATAAAGCAAAAGCGATGTTTATAGACGAGTTCGACTTAAGA
ACGGGAGACGAAACAGTCAATAAAATATTGGAACTTTGTGACATGGTATG
GATAGTCCCATCAACGGAATCTATGTATTTTAATGACAATTGCAATGGCT
TTAAGGAGCAATTTACAACTTTAAACCTCTCACACAATTTTAGAAATTGT
CGAAGTGTCGTGAAATCGACAAAGATGGTTGCGGATGAAACAGACTACCT
ATTTAAAGAAGGTATAGTGATGCCTCCATCAAATTTCCCCTCTGGTACAG
CACCGACCGTTATGTTCGTTAGGTCAATACGAGACGCAGTATCCAGATCA
CGGAAGATAACCATGGCAGGGATCTTGGTAATAAAAAACGATTTCAATTG
GAATCAGGCTGATATCGAAATGCTCAatgatttgaatgaaaattggAAGA
TTTACAGTTTTGATCAAAACGATTTTCAGCATAACGACAACCCATACACA
TTTCTCCAGGATggaaatattttggtaattgaTGGTTTTCTGGCTATAGG
CTTTGAGTGGCCAGTGGTGATCGTGTTTGAAGATATGAGTAATGATGTAA
CTTATCATGAATGCAATTATATGATGAGGTGTTCCACTAACCTTCTAATT
GTaaaaaaaCCGTCCCAGTGTCGTCCATGAaagaaaaaaacaacgatggC
GTCTATATGTCAAAAAATACTGTTACTTGGGCCAAGTCGAATTGATCCTA
CAAAATGTCATCCAGGAAGTTCGTTATATGCACAAATAAAACGAAATGGT
GAAATGACATTGCAGCGTCAACAAAGACAATTTAATTTGGGGAATTCGGA
AACATTCTCTGATCCTATCATAGCAGCCGACTATCTTCTTGAAAGGGAAT
ACGGCGAAACAGCACTTTTTGACACTACTCAACATGGAGCTGTCTTTATA
CCTCCAACGTTTATGTCGTACCAGTATAAAAAGAAATCGACTGTTGCAGT
TCTTGATTATGATGTaaaaaaaGACATCGAAAGACTTTTGCATAATTTGT
TGCACCATTCACCGAATTATTGGTTCACAACTGATTTGCGAGATTTTATA
AGCTCGCAAGGCTTTGGTGATACGATTGATCAAAAGTATTTCAGTAAATG
GATCCTGAATCTTAAAATTAAGTATCTAATTATGCAAGAACTCAATACAG
ATGAAGTTTGCTTACCACCAATAACTCTTGAGCCTGACGTATTTATAAAA
GGTTGCATCCAAgaaatttgctcgaaatcaaTTAAAACATCAATGATAAT
CCTGTTGGGTGAATATTCAAACATCCCATTTAAAAGACTATTAAGGCAGA
AAGTTGACGAAAACCCTCCAACTGATTCCAATCTTCGATGGCTTTTTGAC
TTAGAGATATCAGAGCTAGgagaaaaagttcaaaatgaatTCTATGATAA
ACTTTCATCATTACAGGATGATGATGTTCTCAGTGACACAGTTGTTCTTT
CTTCGATCGGTTTTATAACAAACGTTCGAAATAGGATGCAACAGgaattg
gattttttcattaTATCATGGCCACGAAAGCTAATTATCTGCATAGAATC
GAAACGTACTATTACTGACAGGATTTTCGAGCAGCTGGAAATGCATCAAT
TTTTGTTGGAAACAAAATTTGGCGACCAACTTGGACATGGATGGACCTTT
TTCCCAGttattttgtctgaatttgataaattttcattttccagtcGTCA
CTACATCACAACCTGCACAGACATCAAATCATGGTTGGTGAGTATTTTTC
AACATTATCCAGTAGTTCCAATGTGGACTACGTTCAATAATACACTTAGC
CAAACTAAAGATGTATTAAGATTGATTATTTTTACATTACATGCATCGAA
ACACGCACCAATAACCACCACAAATTGGGTTGAATACATCAATTCAGCCA
TCGATAATGTAGCTACCAGTGACAATATCCTGTTTTACTCCAAGGAGCAA
TTAGCGGTGATGTCCTTAGATAACGATAAATACAATAAATTAATTATCAC
GGCTGGTTGGGGTACTGGAAAAAGTCTTTTGCTCACCAACAAAGCTATTC
AAATGAATTCGGATCCTTATTACAAAGAGAGAGTTATGTATGTGCTCGCA
AACGGACCTTTCAAGGGAATAAATACAATGCTATATCATCGGTTGAAATT
TGATTTGGAGAAGAATCATGGAATCTTTGTCaaagaaattgctaaaaaaG
GTGGAAGCCGTACAGATTTATTGGACGATATCAAACAGCATAAAGCAAAA
GCGATGTTTATAGACGAGTTCGACTTAAGAACGGGAGACGAAACAGTCAA
TAAAATATTGGAACTTTGTGACATGGTATGGATAGTCCCATCAACGGAAT
CTATGTATTTTAATGACAATTGCAATGGCTTTAAGGAGCAATTTACAACT
TTAAACCTCTCACACAATTTTAGAAATTGTCGAAGTGTCGTGAAATCGAC
AAAGATGGTTGCGGATGAAACAGACTACCTATTTAAAGAAGGTATAGTGA
TGCCTCCATCAAATTTCCCCTCTGGTACAGCACCGACCGTTATGTTCGTT
AGGTCAATACGAGACGCAGTATCCAGATCACGGAAGATAACCATGGCAGG
GATCTTGGTAATAAAAAACGATTTCAATTGGAATCAGGCTGATATCGAAA
TGCTCAatgatttgaatgaaaattggAAGATTTACAGTTTTGATCAAAAC
GATTTTCAGCATAACGACAACCCATACACATTTCTCCAGGATggaaatat
tttggtaattgaTGGTTTTCTGGCTATAGGCTTTGAGTGGCCAGTGGTGA
TCGTGTTTGAAGATATGAGTAATGATGTAACTTATCATGAATGCAATTAT
ATGATGAGGTGTTCCACTAACCTTCTAATTGTaaaaaaaCCGTCCCAGTG
TCGTCCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13217MSTRG.13217Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13217.1.p1.exon1MSTRG.13217.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13217.1.p1.exon2MSTRG.13217.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13217.1.p1MSTRG.13217.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103_pilongenomesc0000103_pilon:1080970..1083928 +