MSTRG.13215.1.p1 (mRNA) -

Overview
NameMSTRG.13215.1.p1
Unique NameMSTRG.13215.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000103_pilon:1074412..1078763+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13215.1.p1 ID=MSTRG.13215.1.p1|Name=MSTRG.13215.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4352bp|location=Sequence derived from alignment at sc0000103_pilon:1074412..1078763+ (Clytia hemisphaerica_ch_hm2_pilon)
GAAAATTATGACTATCTGTTATGTATCAGTTTAGGTTGATGCTGctttct
tgtttatttttcatttgatatattatttttcagtattttaggtTCAAAAC
CCAATCAGTTTGTAAAATGTCGCGAGcgaggaaaaaaggaaaaaaatcgg
ATGTGATTACCGCAGAAGAAGCTACGCAGGAATTGAATGCTTTGCAGCCG
AAGAAAATCTCACCGAAAAACTATGACCAAGACTATAACTTAGAAACACA
GATTTTAGATAATAAAAAATTAGTTTCTAGCAaccaagaaaaacagtttt
catACCTTTTAGGGAACTCAAAACACGTACCAGACCCGATGAAAGTCATG
GAAGAGCTTCTTGAACGTGAATGGGGTGATTACTTTTTGTTTGATGAAGG
GGAATGCAAGTCCGAAGCAAtttttttCCCCTTTTGCTACATTTCAAACC
AATGCACTGGTAAACCCTCCGGTGCCATTCTTGATAACAACATTAAGAAA
GAAATGGAGAGgctcttgaaaaatttaaaagaacatcGCCCAAAAGATTG
GTTGATACGCGAAGTATCATCTTTCATTGCTAGTCAACCAAAATCTGATG
ACATATTTGATAGTAAGGCATTCGAGAATTGGAAACTAAACCTGAAAATT
ACGTACATCATTCGTGACCTAACCGGAGCTAACAAGATTGCCTTACCAGA
GAcaatatcaaaaaatttcattgaGGATTGTATCAAACGTGTTTCATCAC
ACGAGACTTTGTCAGAAATTAAAGACTTTCTTGAAAAGCTTGAAAAGTGC
AAAAAACACAgaaatattaaagaaattgtaaacgATAAAATAGATTCGTT
AAACATTGATGATTCCAATCTAAACAAGCTTTTTAATTTGGAATTTTCAA
CTCTTGGAAAGGATGTCGAGAAATGGTTCCGTGAGCAGCTCGACCCATTG
AAGGACGGAATTCTTAAAGAAGCCGTAATTCTTTGCCCGACCATATTTTT
CAACGTTGAAGAGAAAAAACACAGGGAAATGGattgtttcattatttttt
ataagcgcAAATTGATCATTTCAATTGAGATGAAAAGAACAATTTATACC
GATAGCGTGTTTAAGCAAATAGATAAAAACCATCGTCTTTTTGAAGAGAA
ACTTGGCAATCAGTTTTCTTCTGAATGGAGCTTTTTTCCAGTCGTATGTG
CCAAGTTCAGCGACGGGATCAATGTCAAAAGCAAGCACTTCATAACCATG
GAAACCAAAGTCGACGAATGGTTACAGGATGTATTCGAAGATTTTAACGA
AATcccacaaaatcaaaaaacttctcgtgatgatttaaaaaaagtactGC
AAATTTTAGTTTATGCCCTTCATGCATCAAACAAATTTCAGAATTCACAG
ATAACAAGCTCCAACTGGGTTTCGTATGTCACCGGCGCAATTGAAAACAC
CgcaacagctgaaaatattttgttttactCAAAAGAACAATTTGCCATTA
TGAATAATCGTGATCACAATAAGCTGATCATCTCAGCTGGCTTTGGAACT
GGAAAGAGTACCTTGCTGAAAGAGAAAGCGATACAGTTGAAAAACCATTT
CTGCAAAGGAGAGGAGATTGTTTATATATTAGGAGAAAGACCACGGAGAG
ATTCTCATACCCTGTTTTATCATCGAATGAAGGAAGAGTTGGAAGTGAAG
CACAAAATTAAAGTCATGGAGCTTGCCGCAAAAGTAAGTTTCCTGTAGTT
TAAGTCTACAGTAAAGTATGCAACATGGGTCGTCTCACCATCATTCACGA
CAAATAAGCCTATTCCATAGGATTCGTGCCTCTGTTATACATGCTgcatt
ttctattcaatttacgGTTgtcccggaaaaaaagtatcgataaaaaaagt
gaaaacttaaaatttaatgttattcattatttgacgtttcggtgtcttct
ttgcaccatGACCACAAGACAAGTATagtaaaataaattcaaaacgaatt
tcaatttacaacattcaaaaaatcacaaaattaaaaattactaCCAGGTA
ATTACAAGTTGTTAAATTTCACAAAGGAACGCATACATCTTAAAAGAGCT
CAAgggggggggTGGTGAAGAGACATGCTCATTCAAGTCCGGTTTGAGCT
CCCTTATGATCAGCATttcttttatataaagctcttcatggtaattaaaa
ttaaatttttagttttcactttttttatcaaatttatctgGCCCAGCaaa
aaaaGAAGTATCGAGTTCAAACATGATTCTGACTAGGTTTTtgctataga
agtggtacgactatcgatactttttttcgagACACCCTGTACAGGAGGGA
GAATGCACaaatacttgaaaatttcacttcgagaaagaagatttttcgtc
acttttctaTTGATTTAGGAACTCAAGAACAAACTGTTTGGGCGCGTTCA
CACTGcaaaagcagccggcgaggcgaccttttttacgatgtgttctgaga
gcatatttcagctagaaattttaatctgttctgatcagaacttcgaaaat
taatcagctagaaatgatgtgttctggtgagacaggggtataatatcaag
gtcatctaacgcgttcttgttgtctaggtaaccctagaaagcttcagaac
acatcttttaaggaaaaaggggtataatcaagagaaagttgatgtaatct
tgttgcTTAGTAACCCTAGAagttttcagaacacatctttcgtggataaa
aacaaatatcttacgaatttattttggcaaactttttttcctagatttta
gaacacatcaaaccataaagtagtgataagtttagggagacaaatagtgc
gataaaggtttcctagaaatcagaacacatcattcgatcatttgtataaa
aaattgaaaggtcataacatttggtctcctagaagataagaacacatatt
tttaaataatctcttcgccggctgcttctgacaCTGGAAGGTTTCCTTAG
TAAAACTGTAGTTgtaaaatcttttatgttttacaATAGAAGCGTGCACA
CAACAATACCTCAGATTTCCTCTTGATGACATCCAGCTTATAAAGATGAT
ACAAAGTTTAATAAAggcattaaaaaaaattttgtggatAAAGGAATTCG
TGAGGTCTGTCCCTGAGGTTCACAAAATGCACTGCTTGGaactctttttt
aaattttctactttttacaTGAGCTTTACTGGGGGACAAATGGCAATTTA
CATTACAGttaaaaatcactaaaatggtattcttaggttcTCTTGCCTAA
TCCATCATGGTGCTATTTCaagcatattcttattttttttgaccaatttc
atcatgaatattcttataaaaaagcatgtagtGCTTAGTTGTACACAAAT
CTCATTTGTATTACCTTTTTGTTATTACTCAGGATGGGAAAAAACCTATT
GACGTAATCAGAGAACGAAACACCAAAGGAGCGTTCCTCGACGAGTATCA
TTTACAAAACAATGACCCGTTTTTGAAGGAACTTTCAGCTCTCGTAGATT
TCTTATGGGTGGTTCCTTCTACCAATTCACTACACGTTTTTCATCatgaa
tttccaaattttgaaaaagaatacaCCGTGCTTCGTCTCGAAACCAACTT
TCGAAACACTAAGAAAATGGTTGCAGACATAAAAAACAGAGCTTTGGAAA
ACGATTATCGATACAAAGAAGGAATAGTGATGCCACTTGAAAATTCCCCT
GATGGTCGTGAACCAACAGTTGTCAAAACATTCAAGGATGGAAtgcaaaa
agcaaagaaaagcaATCAAGAAGGAACTTGGGGCTCGATTTTAGTAATTG
CAAAACCTTCTTACAACTTATCAGATGACTTACATGGTTTCAAATGGAAA
TGGTACAGTACAGATGaaaggaaaaatgatttttcaaaaaataaatctac
cGACGATTCTGGTGACAATCCTTACACGTTTCTTCTCAAAAATGAAGCTG
TTTTGGTTATTGACGAGCCTTTGTCTCTTGGCTTTGAATGGCCTACTGTA
ATTGTATTTGAGGGTATGGAAGCTGATGTTGTTTACCATGACATAAACTA
TTTTATGAGATGCCAAACACATCTTATAATTGTGGAGAAACCGAAGAAAG
CAGATTCTTAGTTTGattttatacataATAATTACATATTAATTACatat
taattagattaaataGCCTCATACTGATTAGGAAGTCCTGGGAAGGagag
cccggggtccacttaaagcttttttatagactggatggcgcgattaagtg
gcccggtagaatatggtaatatgctttagcttaggcggactgtaaaacag
tc

Coding sequence (CDS) from alignment at sc0000103_pilon:1074412..1078763+

>MSTRG.13215.1.p1 ID=MSTRG.13215.1.p1|Name=MSTRG.13215.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4692bp|location=Sequence derived from alignment at sc0000103_pilon:1074412..1078763+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCGCGAGcgaggaaaaaaggaaaaaaatcggATGTGATTACCGCAGA
AGAAGCTACGCAGGAATTGAATGCTTTGCAGCCGAAGAAAATCTCACCGA
AAAACTATGACCAAGACTATAACTTAGAAACACAGATTTTAGATAATAAA
AAATTAGTTTCTAGCAaccaagaaaaacagttttcatACCTTTTAGGGAA
CTCAAAACACGTACCAGACCCGATGAAAGTCATGGAAGAGCTTCTTGAAC
GTGAATGGGGTGATTACTTTTTGTTTGATGAAGGGGAATGCAAGTCCGAA
GCAAtttttttCCCCTTTTGCTACATTTCAAACCAATGCACTGGTAAACC
CTCCGGTGCCATTCTTGATAACAACATTAAGAAAGAAATGGAGAGgctct
tgaaaaatttaaaagaacatcGCCCAAAAGATTGGTTGATACGCGAAGTA
TCATCTTTCATTGCTAGTCAACCAAAATCTGATGACATATTTGATAGTAA
GGCATTCGAGAATTGGAAACTAAACCTGAAAATTACGTACATCATTCGTG
ACCTAACCGGAGCTAACAAGATTGCCTTACCAGAGAcaatatcaaaaaat
ttcattgaGGATTGTATCAAACGTGTTTCATCACACGAGACTTTGTCAGA
AATTAAAGACTTTCTTGAAAAGCTTGAAAAGTGCAAAAAACACAgaaata
ttaaagaaattgtaaacgATAAAATAGATTCGTTAAACATTGATGATTCC
AATCTAAACAAGCTTTTTAATTTGGAATTTTCAACTCTTGGAAAGGATGT
CGAGAAATGGTTCCGTGAGCAGCTCGACCCATTGAAGGACGGAATTCTTA
AAGAAGCCGTAATTCTTTGCCCGACCATATTTTTCAACGTTGAAGAGAAA
AAACACAGGGAAATGGattgtttcattattttttataagcgcAAATTGAT
CATTTCAATTGAGATGAAAAGAACAATTTATACCGATAGCGTGTTTAAGC
AAATAGATAAAAACCATCGTCTTTTTGAAGAGAAACTTGGCAATCAGTTT
TCTTCTGAATGGAGCTTTTTTCCAGTCGTATGTGCCAAGTTCAGCGACGG
GATCAATGTCAAAAGCAAGCACTTCATAACCATGGAAACCAAAGTCGACG
AATGGTTACAGGATGTATTCGAAGATTTTAACGAAATcccacaaaatcaa
aaaacttctcgtgatgatttaaaaaaagtactGCAAATTTTAGTTTATGC
CCTTCATGCATCAAACAAATTTCAGAATTCACAGATAACAAGCTCCAACT
GGGTTTCGTATGTCACCGGCGCAATTGAAAACACCgcaacagctgaaaat
attttgttttactCAAAAGAACAATTTGCCATTATGAATAATCGTGATCA
CAATAAGCTGATCATCTCAGCTGGCTTTGGAACTGGAAAGAGTACCTTGC
TGAAAGAGAAAGCGATACAGTTGAAAAACCATTTCTGCAAAGGAGAGGAG
ATTGTTTATATATTAGGAGAAAGACCACGGAGAGATTCTCATACCCTGTT
TTATCATCGAATGAAGGAAGAGTTGGAAGTGAAGCACAAAATTAAAGTCA
TGGAGCTTGCCGCAAAAGATGGGAAAAAACCTATTGACGTAATCAGAGAA
CGAAACACCAAAGGAGCGTTCCTCGACGAGTATCATTTACAAAACAATGA
CCCGTTTTTGAAGGAACTTTCAGCTCTCGTAGATTTCTTATGGGTGGTTC
CTTCTACCAATTCACTACACGTTTTTCATCatgaatttccaaattttgaa
aaagaatacaCCGTGCTTCGTCTCGAAACCAACTTTCGAAACACTAAGAA
AATGGTTGCAGACATAAAAAACAGAGCTTTGGAAAACGATTATCGATACA
AAGAAGGAATAGTGATGCCACTTGAAAATTCCCCTGATGGTCGTGAACCA
ACAGTTGTCAAAACATTCAAGGATGGAAtgcaaaaagcaaagaaaagcaA
TCAAGAAGGAACTTGGGGCTCGATTTTAGTAATTGCAAAACCTTCTTACA
ACTTATCAGATGACTTACATGGTTTCAAATGGAAATGGTACAGTACAGAT
GaaaggaaaaatgatttttcaaaaaataaatctaccGACGATTCTGGTGA
CAATCCTTACACGTTTCTTCTCAAAAATGAAGCTGTTTTGGTTATTGACG
AGCCTTTGTCTCTTGGCTTTGAATGGCCTACTGTAATTGTATTTGAGGGT
ATGGAAGCTGATGTTGTTTACCATGACATAAACTATTTTATGAGATGCCA
AACACATCTTATAATTGTGGAGAAACCGAAGAAAGCAGATTCTTAGATGT
CGCGAGcgaggaaaaaaggaaaaaaatcggATGTGATTACCGCAGAAGAA
GCTACGCAGGAATTGAATGCTTTGCAGCCGAAGAAAATCTCACCGAAAAA
CTATGACCAAGACTATAACTTAGAAACACAGATTTTAGATAATAAAAAAT
TAGTTTCTAGCAaccaagaaaaacagttttcatACCTTTTAGGGAACTCA
AAACACGTACCAGACCCGATGAAAGTCATGGAAGAGCTTCTTGAACGTGA
ATGGGGTGATTACTTTTTGTTTGATGAAGGGGAATGCAAGTCCGAAGCAA
tttttttCCCCTTTTGCTACATTTCAAACCAATGCACTGGTAAACCCTCC
GGTGCCATTCTTGATAACAACATTAAGAAAGAAATGGAGAGgctcttgaa
aaatttaaaagaacatcGCCCAAAAGATTGGTTGATACGCGAAGTATCAT
CTTTCATTGCTAGTCAACCAAAATCTGATGACATATTTGATAGTAAGGCA
TTCGAGAATTGGAAACTAAACCTGAAAATTACGTACATCATTCGTGACCT
AACCGGAGCTAACAAGATTGCCTTACCAGAGAcaatatcaaaaaatttca
ttgaGGATTGTATCAAACGTGTTTCATCACACGAGACTTTGTCAGAAATT
AAAGACTTTCTTGAAAAGCTTGAAAAGTGCAAAAAACACAgaaatattaa
agaaattgtaaacgATAAAATAGATTCGTTAAACATTGATGATTCCAATC
TAAACAAGCTTTTTAATTTGGAATTTTCAACTCTTGGAAAGGATGTCGAG
AAATGGTTCCGTGAGCAGCTCGACCCATTGAAGGACGGAATTCTTAAAGA
AGCCGTAATTCTTTGCCCGACCATATTTTTCAACGTTGAAGAGAAAAAAC
ACAGGGAAATGGattgtttcattattttttataagcgcAAATTGATCATT
TCAATTGAGATGAAAAGAACAATTTATACCGATAGCGTGTTTAAGCAAAT
AGATAAAAACCATCGTCTTTTTGAAGAGAAACTTGGCAATCAGTTTTCTT
CTGAATGGAGCTTTTTTCCAGTCGTATGTGCCAAGTTCAGCGACGGGATC
AATGTCAAAAGCAAGCACTTCATAACCATGGAAACCAAAGTCGACGAATG
GTTACAGGATGTATTCGAAGATTTTAACGAAATcccacaaaatcaaaaaa
cttctcgtgatgatttaaaaaaagtactGCAAATTTTAGTTTATGCCCTT
CATGCATCAAACAAATTTCAGAATTCACAGATAACAAGCTCCAACTGGGT
TTCGTATGTCACCGGCGCAATTGAAAACACCgcaacagctgaaaatattt
tgttttactCAAAAGAACAATTTGCCATTATGAATAATCGTGATCACAAT
AAGCTGATCATCTCAGCTGGCTTTGGAACTGGAAAGAGTACCTTGCTGAA
AGAGAAAGCGATACAGTTGAAAAACCATTTCTGCAAAGGAGAGGAGATTG
TTTATATATTAGGAGAAAGACCACGGAGAGATTCTCATACCCTGTTTTAT
CATCGAATGAAGGAAGAGTTGGAAGTGAAGCACAAAATTAAAGTCATGGA
GCTTGCCGCAAAAGATGGGAAAAAACCTATTGACGTAATCAGAGAACGAA
ACACCAAAGGAGCGTTCCTCGACGAGTATCATTTACAAAACAATGACCCG
TTTTTGAAGGAACTTTCAGCTCTCGTAGATTTCTTATGGGTGGTTCCTTC
TACCAATTCACTACACGTTTTTCATCatgaatttccaaattttgaaaaag
aatacaCCGTGCTTCGTCTCGAAACCAACTTTCGAAACACTAAGAAAATG
GTTGCAGACATAAAAAACAGAGCTTTGGAAAACGATTATCGATACAAAGA
AGGAATAGTGATGCCACTTGAAAATTCCCCTGATGGTCGTGAACCAACAG
TTGTCAAAACATTCAAGGATGGAAtgcaaaaagcaaagaaaagcaATCAA
GAAGGAACTTGGGGCTCGATTTTAGTAATTGCAAAACCTTCTTACAACTT
ATCAGATGACTTACATGGTTTCAAATGGAAATGGTACAGTACAGATGaaa
ggaaaaatgatttttcaaaaaataaatctaccGACGATTCTGGTGACAAT
CCTTACACGTTTCTTCTCAAAAATGAAGCTGTTTTGGTTATTGACGAGCC
TTTGTCTCTTGGCTTTGAATGGCCTACTGTAATTGTATTTGAGGGTATGG
AAGCTGATGTTGTTTACCATGACATAAACTATTTTATGAGATGCCAAACA
CATCTTATAATTGTGGAGAAACCGAAGAAAGCAGATTCTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13215MSTRG.13215Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13215.1.p1.exon1MSTRG.13215.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13215.1.p1.exon2MSTRG.13215.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13215.1.p1MSTRG.13215.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103_pilongenomesc0000103_pilon:1074412..1078763 +