MSTRG.132.3.p1 (mRNA) -

Overview
NameMSTRG.132.3.p1
Unique NameMSTRG.132.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000001_pilon:2578168..2582508+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.132.3.p1 ID=MSTRG.132.3.p1|Name=MSTRG.132.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4341bp|location=Sequence derived from alignment at sc0000001_pilon:2578168..2582508+ (Clytia hemisphaerica_ch_hm2_pilon)
TGCTATTTTTGGACATTTGTTTGAAAGAGCTCTATTTCTTGATAAATGTC
ATCGTGAGTGACTGTTTTGATTTTGGGTCACTTTGATATTACTGCATGCA
GAAAACTCAGTTTGAAGACTGTTGGAGCGCTTAAGGATTGCCTATTCCAT
TTATTCCTACATTTACAAGGTTTGAAAATGGAACGTCTAATCCTGTAAAG
CTTGtgattttgaacaataaaaTGCAAGAATACGAGAGAGTTGTTAATAA
TGAGTCGCTCAGCAATATCTTAGTTCTGAAAAAGAGCtttttaggataaa
gaaaatacttattttttcattttcctcaaactttgaaagttttttatttg
gaaTTAGGGACAATATAATATCCTTGGAGATGATTGCCAGAGTCTCGTAA
TAGATAGAAAcagaaaatctttatttttggaATATGTGATCCATCACTGC
TCgaatagaaaaaaatacatgTATACAATCcgattttgcatctttgtgga
ACTTTTTATCCAATAATGCTGATTTTTCTTTCCGTCAGaccaaaaaaact
gtttttgacgaaaattaAGTGTCAGGTTttcgccaaaagtgtaaaaaata
cCGACATAACACAACTTTGTAGTTTTAAAcagacatttttttcaaaaatc
aaaaatcagtCCATGCTAAGCAGAGTAAACAGTATCTGCTTCAACATTAT
AAAATGGTTTAACTGACTTTTTCTAGGCCAAACAACAATGTCAACCAAAA
TTCTCTCCagaagtttcattttttctatcgGAAGACAATGGTGTCAGGTA
TGGTTAAACTCCTTTCTTATTATAAAATGTTTAAGCAGGTAGACAGGTTT
TTGTGAGGAGGAGTGGACTGAGTTCCATTCTCATATTggtatttcagtta
attttctgAACACACCTTAAGCCGCATTTTTACTGCCTTACGCAATAGTA
GGTGATGCCGTGCATTGTGTTGTGTTAAAACAGAGTAAAACATCTGATAG
TGACAATAAAAATGTACATGGTAAAGTCCATTGGATTCCTTTATAACATT
CTCATGGTTATAAGTGGTATGAGTTTTATTTAGAAAGTATGGTACGAAAT
TGCGAGAATCTGATTGGCCTAGAGAAGTGCAACGAATCACTAATTGCTCT
ATTAAAACTTCTTGTTGTAAGACTGCATCCCTCTAAACCAACCAGAGTGA
CTCGAGTAATTCTGCCCAACTGGTGATTATCAAATACTTCTtctaatctc
atggttgattgaaattcgattgacgtttttgtttacgttaatttgaaatt
tcccgcgaacttgcaatttccctcctagcttttgcaatttccctcctagc
ttttataatttccctcctagcttttgcaatttccctcctagcttttgtaa
tttccctcctagcttttgtaatttccctcctagcttttataatttccctc
ctagcttttgcaATTTCCCTCCTactttttgtaatttccctcctagcttt
tgtaatttccctcctagcttttgtaatttccctcctagattttgtaattt
ccctcctactttttgtaatttccctcctagcttttgtaatttccctccta
gcttttgtaatttccctcctagattttgtaatttcccgcaaaagtgaaat
tttcatcgtttggaaatCCATCACTATTTTcgactttcttactaacttca
aaggcttaagtaaatggaatactatccaattaaaactcgattcacgtttc
tatgactttttttagacctctttttaaattttcagattgatttcctgtgt
taaattgacgtctttcagaattgttagaatttcaatccaaaatgtgagat
taaccaggaatcacatgcttgttttcgtgaaattctggataaattaccct
cggtcaaatttcgaaatgttttaaatttccctcattgtactcgggaaatt
tcaaaaaatttcaaaattgacctcgggaaatttatcccgaatttccctta
taaccatgagattactagtacaaatttttgcgaagcgaatttatgagcga
agcagttttgctatattgtgcacgtacctttaacttctatcccaagcgaa
aatttgctataaaatttgctatataaatcacatcttcaaaccgatgattt
tatcaaaatgaccttgaatggtttggcttgaagccacgaaaactttctcg
gtttggtagctaggactgcgaaaaatgccgttttaaaatggtgtaatcta
acagtgaacagcaacaaaattaccggaagccgaaacacggacttaaaatc
tgaagttgatcaaattgccgcgcgggcgacatgcatctaagcaatctaag
cagtggttcttcggttttaaatgtttattttgctgttaaatggaaaaaaa
atagtttgaacagtaacagaaaggatcttcatcatcccttgacttttaac
agcaagtatcaagtatcaaataaggtcaattaatgagaggtttttgcaag
tcgcgcgggcgggcgggaggagtgctacCTTGCActaccaagtggatatt
ctatgataaagaagtacggagataatcaaatttgtcgaatttgtcaagaa
ataaatcaaaactgcccaagaaccaacaagccatctttgtacatttttgt
ttttgttttatttttatgttttgatgatttcgacagacgattcgtgattc
gaataaaaatgttcgatcgttcgacgaatatcgttcgattttattaaggt
accatttacactagaataactagaaggaaaaaaaaagagcAATGCGCGGC
GGGCGTTatgccgccgtggattatgtggtgtgtttggggcattaaggctc
ttacgaccctgtctctatagcggctttattaattagagggatttttagag
tgtctcttattttgctagcaacttgcgaaatgaggtggagtctggatcgc
ttcgcaacccttatacaatacggctagtacTCTActctaaaatttttatt
ttcgtcaTCAGATTCGAAATGGAAGTACAAACATGGAGAAAGTGATTGTA
GCATCAAAAGAACCTTTCTGTGAGAACTTAACCAAAGGAACTCGTTACTC
ATGGTGCACTTGTGGTTTAAGTCACAAACAGGTAAAGAGAATGCTGTCAT
CTTTTTGCGATTTCTAAATGATGGTTTTTGAGCCCAAAATACGACATCGC
TCCTACTCGCTCTAGTACAGTATttgaacaaacaaaaaatcaacaTCTTA
TGACATAGCGCTCattattcaaatttcaaagagTACTCTTTTTCGTTTCA
GCCATTTTGCGATGGAAGCCACGAAGGTTCGGGAATGCGGCCACATCGTA
TGAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTGGatgtaaacaaacc
aaaacaccTCCTTATTGCGATGGCTCCCACATGAGTGATGACGTACAGGC
TTGCGTTATCGGTTCCTCTTTATCGTGATTACTTTCACGGGTTGAAGAAA
CTTCGAGGTATTAAACTTTCCTCTCCCAAAGACTTAATTAATGAAATAGT
TTTATATATAAGTTTCCAATTGAATATattatacatattttttaaatgat
actGTCCTTTATTAGTTTGCGtttttttatagatgaaatgaaaattgata
gCGAGAAATTAAAATGGCTGAATGGTTGCTTCTTGCTCTATTGAATTTAT
CCCTCTACAATCAGACTTGACCGTGGGAACTAAAGGTCTTCATTGGACAT
TTTTAGAATacacacccttctcacagacccgatgaGCCAGTGGGgcggta
aaaataacggaccaaaactcgatgggggatCGATATTCATAttcacatgt
ttttttatggctggggttgaattcctttgttttcttgcCAAAACATTTAG
TGGGGATATAAAAAATAGAACAATATTTTGCAGCGGTGATTTGCTTTTCT
GATTATCTTCATTGGGCTCAAAAaatagagtataattttccactggggac
aatattttggccagtgggtctgtgagaagggggtgttaaaatGTCATCTA
GCTGCCGAATTTCAAATCTTGTGTATAGCATGGCGCTCTAAAATTGAAAC
TGAGATACTTACGCTCGGACAATTAGCAAGAGAATCATTTGCTTTAAAGA
CTCTTTCGAAAAATAGTTACTATAATcagtaaatttttaatgattataat
ataattttatttcaatgatgTTTTTACAGAAAGAAGCACACGAAACAGGA
GTTTCGGGTTACTGTATTGAATTTTGATTCTGAAATATATCTTGATTCCA
GTTCTTGGTTTAGTCACGGTTTAGTCATCAGAATATATTTC

Coding sequence (CDS) from alignment at sc0000001_pilon:2578168..2582508+

>MSTRG.132.3.p1 ID=MSTRG.132.3.p1|Name=MSTRG.132.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0000001_pilon:2578168..2582508+ (Clytia hemisphaerica_ch_hm2_pilon)
GCTATTTTTGGACATTTGTTTGAAAGAGCTCTATTTCTTGATAAATGTCA
TCGCCAAACAACAATGTCAACCAAAATTCTCTCCagaagtttcatttttt
ctatcgGAAGACAATGGTGTCAGATTCGAAATGGAAGTACAAACATGGAG
AAAGTGATTGTAGCATCAAAAGAACCTTTCTGTGAGAACTTAACCAAAGG
AACTCGTTACTCATGGTGCACTTGTGGTTTAAGTCACAAACAGCCATTTT
GCGATGGAAGCCACGAAGGTTCGGGAATGCGGCCACATCGTATGAAAGCA
GAAGAAACTTGTGAAGTCTTCTTTTGTGGatgtaaacaaaccaaaacacc
TCCTTATTGCGATGGCTCCCACATGAGTGATGACGTACAGGCTTGCGTTA
TCGGTTCCTCTTTATCGTGAGCTATTTTTGGACATTTGTTTGAAAGAGCT
CTATTTCTTGATAAATGTCATCGCCAAACAACAATGTCAACCAAAATTCT
CTCCagaagtttcattttttctatcgGAAGACAATGGTGTCAGATTCGAA
ATGGAAGTACAAACATGGAGAAAGTGATTGTAGCATCAAAAGAACCTTTC
TGTGAGAACTTAACCAAAGGAACTCGTTACTCATGGTGCACTTGTGGTTT
AAGTCACAAACAGCCATTTTGCGATGGAAGCCACGAAGGTTCGGGAATGC
GGCCACATCGTATGAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTGGa
tgtaaacaaaccaaaacaccTCCTTATTGCGATGGCTCCCACATGAGTGA
TGACGTACAGGCTTGCGTTATCGGTTCCTCTTTATCGTGAGCTATTTTTG
GACATTTGTTTGAAAGAGCTCTATTTCTTGATAAATGTCATCGCCAAACA
ACAATGTCAACCAAAATTCTCTCCagaagtttcattttttctatcgGAAG
ACAATGGTGTCAGATTCGAAATGGAAGTACAAACATGGAGAAAGTGATTG
TAGCATCAAAAGAACCTTTCTGTGAGAACTTAACCAAAGGAACTCGTTAC
TCATGGTGCACTTGTGGTTTAAGTCACAAACAGCCATTTTGCGATGGAAG
CCACGAAGGTTCGGGAATGCGGCCACATCGTATGAAAGCAGAAGAAACTT
GTGAAGTCTTCTTTTGTGGatgtaaacaaaccaaaacaccTCCTTATTGC
GATGGCTCCCACATGAGTGATGACGTACAGGCTTGCGTTATCGGTTCCTC
TTTATCGTGAGCTATTTTTGGACATTTGTTTGAAAGAGCTCTATTTCTTG
ATAAATGTCATCGCCAAACAACAATGTCAACCAAAATTCTCTCCagaagt
ttcattttttctatcgGAAGACAATGGTGTCAGATTCGAAATGGAAGTAC
AAACATGGAGAAAGTGATTGTAGCATCAAAAGAACCTTTCTGTGAGAACT
TAACCAAAGGAACTCGTTACTCATGGTGCACTTGTGGTTTAAGTCACAAA
CAGCCATTTTGCGATGGAAGCCACGAAGGTTCGGGAATGCGGCCACATCG
TATGAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTGGatgtaaacaaa
ccaaaacaccTCCTTATTGCGATGGCTCCCACATGAGTGATGACGTACAG
GCTTGCGTTATCGGTTCCTCTTTATCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.132MSTRG.132Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.132.3.p1MSTRG.132.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.132.3.p1.exon1MSTRG.132.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.132.3.p1.exon2MSTRG.132.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.132.3.p1.exon3MSTRG.132.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.132.3.p1.exon4MSTRG.132.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001_pilongenomesc0000001_pilon:2578168..2582508 +