MSTRG.13175.1.p1 (mRNA) -

Overview
NameMSTRG.13175.1.p1
Unique NameMSTRG.13175.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000103_pilon:454669..458739-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13175.1.p1 ID=MSTRG.13175.1.p1|Name=MSTRG.13175.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4071bp|location=Sequence derived from alignment at sc0000103_pilon:454669..458739- (Clytia hemisphaerica_ch_hm2_pilon)
GTTCCTGATATCCTGACATCACTTGCAGAAATTACACACCATGCAGAAAG
TGACAACCCAGTGAGTGAATATCTAGATTTAAGAAAATTTTTTGTACTAA
TAAAATACATTTAATACTTTGTAGTAAATATTGAATTTGTCAAATTTGTG
TAATAAATGACTTGAAATCCTTCAAATAATTTCTAGCCTCTATGCCATAA
AACGGGAGTGGAAAATTGTACACTGTTGAATATGTTATCAATTTAATTTC
AGTATGTTGAAGTTAGTCAGGAATGAGACCGTGGACATGAAGAGCTGCTT
GATTCTAATTTGGTATGACAATGTCAATTATTAGTATTAACCCATCCTGT
TTTTGCACTTATTTAATTGTACTCTAATGTACAATGGGTGGTAAAGCGAG
CAAAACAATTTTTCGATGGTCGTCAGAGCAATTGAGAAAAAAGCTATACT
TTAAAAGAACAAATTGCTTTTCCCAGATTTTTCTCCGCATCGGAAAATCA
GCGGAAAATTTGATGCGGGCGGGTGACGCGAATAGGACAATTTTTCGATG
TCACCCTTAAAGGTCAAATGTGAAAGGTCAATAAGAATCAAACAAGAAAG
GTTAATAGGAATTTCTTGATTTTTCCTAGTATTCGAATAAGATGTCGACT
CCAAAATCTAGTGTGAACAAGCCAAAAGTGATCAGAAAAACAACCCCCTT
GATAGTAGAGGTAAGAGAACATTGTAGAGCTTTGTTAACTTTAATAATTA
AAAAAAGGAACCAATTAAGACAAGCAGTAAAAATCCTTAAAATTTAGGCC
CGAATTTTTCTATTTTGATAAAACAGGCGCTAGTCTCTGGTGCCTAATTT
TTTTGTGTCAAATTTCCTGCCTGTACGCACCTTATTAGACCCTGTAAGTT
TATTTATTTTGAGGAATTTTCCAGCCTGTACGTTTATTTTGACCTAACAT
CTCCCAATTTATACTGGAAAAAATTGTTATTTTTTGTTCAAGTAAGACGC
GTAGAAAGGCCGTTAATTACATTTGTATGTATCGTGGGAGATTTTAAATG
CTACACAAGTAAATTCCAACGTTTTACTATAAATTCTAGCATTTGATTTG
AACTCTACTTTTGAAAATTTGGTAGATTTTTTCTTGTACGTGTATTGGGC
ACCTGAGAGTAAGAGAAAAGTTCCAAGCATTTCAGCACCTAAAAACTTAT
TTTATAGCAGCCTGCATATTCCGCACCAAAGCTGCCTTCCTCTAAAAGTC
CCCAATCAATAGGGGCAAAGGTAAGTCACTCCCTGTTAATTATTCACCTT
TCAATCAAAGATGAAAATAGTATACCTCAATTTTCATGATTGACCATTTT
TGCAAAAGTAAGTCTCTGCAAAAATTATGGAATGGCATGTATTTAACAAT
TGTACAAGTAAGTCTTGCAAAAATCGAAATGTAATCAATGTAATTGTACC
TTCTTTGAATGGACTTTTGAATCTTTGATCGTCCTTGTTGATTATGTTTT
CATCAACAAGCACCCTCTTCTTGCTAGTACAACAAGTTGGTGCGAGACAT
TCGTTTGCCAGTGTTTCTTTGACCTTTAAGAATGTAAAGTAGCAGATGAG
TAACCAAATTGTTATAAATATTTCTGATTTTTAATCTGGTGAATTTAAGC
CCCATTTTGTGAAATCAAGTTTTTAGGCATGAGTAAATTTCTGATGTTTT
TATAAATCACTTATTTTCTATTACAGTTTAAACAATTGAATGAATTTGCC
CCACATATCATTTTGACACCGGATGATATGAAAAGGTTACAAGTCCAGTC
TTCAAATCTGACTAATTGGCGACCTTTCGTGAATGAAATTCTGGATATCT
TATTCACCAAAGAAGAACTAGCTAGGTAAAAATTTTGCTTTTGGGCGATC
AAAACACTGGTTTTATGCCCCAAGAACTCTAATTCTCTACTTTTTCGACC
TAGTGAAAGTTTCTGCTCACTAAAGTCTGTACGCCTTTGAAGTATTTTTC
TCGTCATTTCAAAACATCGAGAGCACAAGGTGGCAATCACAAATATCTTT
GTTTTGCATCGCCCAACCAACTATCGAAATTGAGTAGAATTAAGTCTGTA
AATTTTTCGGACCTTTTCTGTCAATGACGTTTCCTTCGTTAAAAAATTCA
AGAGCATGCAGGCGGTCGACGGTAAGGCGGCCATCGAATAAATGCTCTGT
TCGTGTCGTAACAGGTGTTTAAAATGCATGCGGGCAGGCAGACGGAAAAA
TTCCCGGGTTTTTTTAATTATGGCAGTAATTTGGGGGCGGGTGGTGACGT
GAACAACACAATTTTTCGATGGCCGTCAGAGCGGTTAAGAAAAAAGCTAA
ATTACTTTAAAAGAACAAATTTCCTTTTCCTGGATTTTTTTCCACTTCTC
CACACCGGAAAATCAGCGAAAAATATGATGCGGGCAGTGACGCGAATAGA
ACAATTTTTTGATGGCCGCCTAAACAGAACATCAAATTCCCCTCTCGTTA
GACGCGAGAAGTAGAACACCCGAAAATATTTACAACCGACCGACTCACTT
TTTAGACCCACCAAGCGAAATGAAGATATTTGTGATTGCCGCGGTCTAAT
GCAATGATAAGATTTCTAAGTATTTACAATGAAAACTCACAATAGGTCAT
GCGCAATGGGATCCACAGATAGAAAGACGGGTAATCAACGACCTGCACTT
AACCCAACGTTAATAGCTGATTTGAAAAGTAAGTTAATTTTTTTTAGTGA
CTCTTTAAGTCAACTTTAAGCCTACGATTCTGAGTTGTAGAGAAATAAGA
AGCTGAAATCATTTGCTGTAAGTCTTTCAGATTTAACGACTTTTTGTGCT
GGAGGTCTGCTTAAGTAATCGAGGGAGATGGTCAGTGTAAGGAAAATCCG
AGTTCAAAAGAAAATTTACCTTGAGGTTTAGCATTGTTGTGTCATTCTTG
TTTCACAGATTATGCAAAAATGAAGTGGCCTTACATCCCATCAACAACCA
AAGATGAGAAAGCAAAAGGATGTAGAGATGGGGACATAAATCGAGTGATT
AACTTGAAATGTGGATCAGCACGTAAACCTCCGGCATCAGGTATGTTCCT
TTAAAAGTTGTTGATTGTAATGATATCTGTGGAATTAACGTACTCCATTT
TGTTCAACTTCTGCGTCTTGAAAGGTTGAAAACGAAAGGTTCAAAATTTG
AGATCACATTTGAAAGGTGGACTGGGTCGACATAAACATTCTATTTTGAT
TATTTTACGGAATGATTCATTCTGGAGAATAACTCCCTTCTTTAGCGCAA
TTCTGTAAAGTATACAAATTGAAACGCCCGTTACCGCCTTGACGCCCGAC
AAGAAAGATAAATCTAAAGCAGCGGCAGTGCGCTAGAAGTGCGCCGCGCT
AGAAGAACGTACAGAATGTTGACGGGCTCTTCTTTATATTTTGCAGAAAA
TCCGGCAAGGAGGAAACCTAAAGGTAAAAAAGAAGTTGAAACGGCAAACA
ACGACGAGGAAAGTCAGTAGATATTTCTTTTTTCAAACTAACTTTTTCTA
TGCTGTTTATATGTTATAATTTTAACCTTGTACCTCATTTATGTCACCTG
ATTTTCAAGCTTCAGAATACAAGTAACAAAATGTGATTTCAAATAAAGCT
TGATTTTCTTTCGTAGTTCCCAAACTTTTGAGCATTTTGTGTACATTATT
TGAGCGACGAACATCATAATGCATATACATTTGAACTTTGCAGACTTGCC
AAGTATGCCATTATTTTCAACTATTTTCAAATCTGCTCAAGTCTGATAAA
ACTTGCATCCAAGTAGTAATCATATTGATTTTGGCATACTTCATACCAAG
TATGCATTTTTTGTTGCAGACTTTCAAGTATGATTTGTCTCAAATGCAGA
CTTGATCAGACTTGGCCAGACTTATACCAAGTCTGCCGAAATCAAGTATG
CAAGTCTGCCGAAATCAAGTATGCAAGTCTGCCAAAATCAAGTATGCAAG
TCTGCATCCTCAAGTATGCATGTCTGCATACTAAATCAAGTCTGAAACTT
TGAGTATGCATTTGAGACAAA

Coding sequence (CDS) from alignment at sc0000103_pilon:454669..458739-

>MSTRG.13175.1.p1 ID=MSTRG.13175.1.p1|Name=MSTRG.13175.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3420bp|location=Sequence derived from alignment at sc0000103_pilon:454669..458739- (Clytia hemisphaerica_ch_hm2_pilon)
AAAATCCGGCAAGGAGGAAACCTAAAGGTAAAAAAGAAGTTGAAACGGCA
AACAACGACGAGGAAAGTCAGTAGATTATGCAAAAATGAAGTGGCCTTAC
ATCCCATCAACAACCAAAGATGAGAAAGCAAAAGGATGTAGAGATGGGGA
CATAAATCGAGTGATTAACTTGAAATGTGGATCAGCACGTAAACCTCCGG
CATCAGGTCATGCGCAATGGGATCCACAGATAGAAAGACGGGTAATCAAC
GACCTGCACTTAACCCAACGTTAATAGCTGATTTGAAAATTTAAACAATT
GAATGAATTTGCCCCACATATCATTTTGACACCGGATGATATGAAAAGGT
TACAAGTCCAGTCTTCAAATCTGACTAATTGGCGACCTTTCGTGAATGAA
ATTCTGGATATCTTATTCACCAAAGAAGAACTAGCTAGCAGCCTGCATAT
TCCGCACCAAAGCTGCCTTCCTCTAAAAGTCCCCAATCAATAGGGGCAAA
GATGTCGACTCCAAAATCTAGTGTGAACAAGCCAAAAGTGATCAGAAAAA
CAACCCCCTTGATAGTAGAGAAAATCCGGCAAGGAGGAAACCTAAAGGTA
AAAAAGAAGTTGAAACGGCAAACAACGACGAGGAAAGTCAGTAGATTATG
CAAAAATGAAGTGGCCTTACATCCCATCAACAACCAAAGATGAGAAAGCA
AAAGGATGTAGAGATGGGGACATAAATCGAGTGATTAACTTGAAATGTGG
ATCAGCACGTAAACCTCCGGCATCAGGTCATGCGCAATGGGATCCACAGA
TAGAAAGACGGGTAATCAACGACCTGCACTTAACCCAACGTTAATAGCTG
ATTTGAAAATTTAAACAATTGAATGAATTTGCCCCACATATCATTTTGAC
ACCGGATGATATGAAAAGGTTACAAGTCCAGTCTTCAAATCTGACTAATT
GGCGACCTTTCGTGAATGAAATTCTGGATATCTTATTCACCAAAGAAGAA
CTAGCTAGCAGCCTGCATATTCCGCACCAAAGCTGCCTTCCTCTAAAAGT
CCCCAATCAATAGGGGCAAAGATGTCGACTCCAAAATCTAGTGTGAACAA
GCCAAAAGTGATCAGAAAAACAACCCCCTTGATAGTAGAGAAAATCCGGC
AAGGAGGAAACCTAAAGGTAAAAAAGAAGTTGAAACGGCAAACAACGACG
AGGAAAGTCAGTAGATTATGCAAAAATGAAGTGGCCTTACATCCCATCAA
CAACCAAAGATGAGAAAGCAAAAGGATGTAGAGATGGGGACATAAATCGA
GTGATTAACTTGAAATGTGGATCAGCACGTAAACCTCCGGCATCAGGTCA
TGCGCAATGGGATCCACAGATAGAAAGACGGGTAATCAACGACCTGCACT
TAACCCAACGTTAATAGCTGATTTGAAAATTTAAACAATTGAATGAATTT
GCCCCACATATCATTTTGACACCGGATGATATGAAAAGGTTACAAGTCCA
GTCTTCAAATCTGACTAATTGGCGACCTTTCGTGAATGAAATTCTGGATA
TCTTATTCACCAAAGAAGAACTAGCTAGCAGCCTGCATATTCCGCACCAA
AGCTGCCTTCCTCTAAAAGTCCCCAATCAATAGGGGCAAAGATGTCGACT
CCAAAATCTAGTGTGAACAAGCCAAAAGTGATCAGAAAAACAACCCCCTT
GATAGTAGAGAAAATCCGGCAAGGAGGAAACCTAAAGGTAAAAAAGAAGT
TGAAACGGCAAACAACGACGAGGAAAGTCAGTAGATTATGCAAAAATGAA
GTGGCCTTACATCCCATCAACAACCAAAGATGAGAAAGCAAAAGGATGTA
GAGATGGGGACATAAATCGAGTGATTAACTTGAAATGTGGATCAGCACGT
AAACCTCCGGCATCAGGTCATGCGCAATGGGATCCACAGATAGAAAGACG
GGTAATCAACGACCTGCACTTAACCCAACGTTAATAGCTGATTTGAAAAT
TTAAACAATTGAATGAATTTGCCCCACATATCATTTTGACACCGGATGAT
ATGAAAAGGTTACAAGTCCAGTCTTCAAATCTGACTAATTGGCGACCTTT
CGTGAATGAAATTCTGGATATCTTATTCACCAAAGAAGAACTAGCTAGCA
GCCTGCATATTCCGCACCAAAGCTGCCTTCCTCTAAAAGTCCCCAATCAA
TAGGGGCAAAGATGTCGACTCCAAAATCTAGTGTGAACAAGCCAAAAGTG
ATCAGAAAAACAACCCCCTTGATAGTAGAGAAAATCCGGCAAGGAGGAAA
CCTAAAGGTAAAAAAGAAGTTGAAACGGCAAACAACGACGAGGAAAGTCA
GTAGATTATGCAAAAATGAAGTGGCCTTACATCCCATCAACAACCAAAGA
TGAGAAAGCAAAAGGATGTAGAGATGGGGACATAAATCGAGTGATTAACT
TGAAATGTGGATCAGCACGTAAACCTCCGGCATCAGGTCATGCGCAATGG
GATCCACAGATAGAAAGACGGGTAATCAACGACCTGCACTTAACCCAACG
TTAATAGCTGATTTGAAAATTTAAACAATTGAATGAATTTGCCCCACATA
TCATTTTGACACCGGATGATATGAAAAGGTTACAAGTCCAGTCTTCAAAT
CTGACTAATTGGCGACCTTTCGTGAATGAAATTCTGGATATCTTATTCAC
CAAAGAAGAACTAGCTAGCAGCCTGCATATTCCGCACCAAAGCTGCCTTC
CTCTAAAAGTCCCCAATCAATAGGGGCAAAGATGTCGACTCCAAAATCTA
GTGTGAACAAGCCAAAAGTGATCAGAAAAACAACCCCCTTGATAGTAGAG
AAAATCCGGCAAGGAGGAAACCTAAAGGTAAAAAAGAAGTTGAAACGGCA
AACAACGACGAGGAAAGTCAGTAGATTATGCAAAAATGAAGTGGCCTTAC
ATCCCATCAACAACCAAAGATGAGAAAGCAAAAGGATGTAGAGATGGGGA
CATAAATCGAGTGATTAACTTGAAATGTGGATCAGCACGTAAACCTCCGG
CATCAGGTCATGCGCAATGGGATCCACAGATAGAAAGACGGGTAATCAAC
GACCTGCACTTAACCCAACGTTAATAGCTGATTTGAAAATTTAAACAATT
GAATGAATTTGCCCCACATATCATTTTGACACCGGATGATATGAAAAGGT
TACAAGTCCAGTCTTCAAATCTGACTAATTGGCGACCTTTCGTGAATGAA
ATTCTGGATATCTTATTCACCAAAGAAGAACTAGCTAGCAGCCTGCATAT
TCCGCACCAAAGCTGCCTTCCTCTAAAAGTCCCCAATCAATAGGGGCAAA
GATGTCGACTCCAAAATCTAGTGTGAACAAGCCAAAAGTGATCAGAAAAA
CAACCCCCTTGATAGTAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13175MSTRG.13175Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13175.1.p1MSTRG.13175.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13175.1.p1.exon8MSTRG.13175.1.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon7MSTRG.13175.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon6MSTRG.13175.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon5MSTRG.13175.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon4MSTRG.13175.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon3MSTRG.13175.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon2MSTRG.13175.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13175.1.p1.exon1MSTRG.13175.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103_pilongenomesc0000103_pilon:454669..458739 -