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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000102_pilon:673389..676726+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13116.1.p1 ID=MSTRG.13116.1.p1|Name=MSTRG.13116.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3338bp|location=Sequence derived from alignment at sc0000102_pilon:673389..676726+ (Clytia hemisphaerica_ch_hm2_pilon)
CTAATTCAATTTGGAAATCAGGTTATTATGAGTGAGGCTTGTATAAGTTT
TGATACTGACTTGATAATCCATCATAATGAAGCTATTATCAATTTTGTTa
caacttttgattttaaaatcaaaacaagctgTAAGCGCTACGACCACCAC
GCCATCACAAGCAGAAAACGCTACAACCACCACACCTTCACTAGCAGAAA
ACGCTACGACCACCACGCCATCACAAGCAGAAAACGCTACAACCACCACA
CCTTCACTAGCTGAAAACGCTACGACCACGACACCATTACTAGCAGAAAA
CGCTACGACCACCACACCATTACTGGTTGAAAGCGCTACGACCACCACGT
CATCACAAGCCGAAAACACTATGAACACCACCACGTCATCAAAAGCTGAA
AACACTACGAGCGCCACACAATTACTAGCTGAAAACGCTAAGACCACCAC
ACTTTCGCTAGCTGAAAACCTTACGACCACCAAATCATCACTGATGAAAG
GTGTATTCTGGGAAGTCAAACCATACATGTTCACAAACGACCGTGGCGAA
ATCGATGGAATCATTCCGAAGATATTCACAAGAGCTAACTCCTTTTGTAA
TCCAAACCCAAACGTCACTATAATCGATTTTGTGAAGAAATTCGAATCTA
GGAAAGACTTTATTCAAAACATTAAGAAGGGGTTCCCATACGGCAAAGAT
TATCTGACAGGGATCAAAGAAGGTGAAATCTTTCTTTCGCCACAGATGCA
AGAGATGGGTGATGAATGGGAGAATGAAAACACACTTCGATCCTTCTCCC
taatgaaaacaaacaaaatggtggTCATCCTCCCACGTAAAATGATCGAT
TTGCCACATAAAATCTTACGAGGAATAGCtagtactaaaattatttttgt
cattgTGATTCCTATGGCCATCTTTTTCAGTATTCTCATCTGGTTCGTTG
AACGGATTTGGAATGAGAATGTTGAACGATCGTTTGTTTTAGGTTGgtat
tattttattaattaGGCTTAGGAACTTATCGTCGCTTACCATAACATTGT
ATTTGGCAGACTAAGATCCATTTAACTTTCCAGAAAATTTCCAGATTTCC
GGGATTATCGGCATGATtttggaaaggttttttttttctaaatgtaTGGC
TTATTTTTCCGAAGCTCATTTTTTCACTATATCCagagtcctggtctttt
tctgcTAGAAAAGTGGCAGTGGAACCCTGTGCCAAAAGATGGTAGTTCTT
TCGCCTACactaaaaatatgatttttgatTCGTGCAGAATTCCGTCTTTA
TACAGCTTGgaagaaaattctcaaaaccttgaaaTAAATCATATGAAGCT
GAAATTTGGTTGCGATTGAGGAAAATCTGTCATTTCCTGGTAACGTCATA
ATCTAATCAGCAAAATTCAGattcatattttcaaataagGCTTGAAAGAT
GGGCATTGAAACGCACTTACTGAAAAAAGTATGATTTATAGGAGAGACAT
TCGGGTTTATAAGATCAATGATCTTTCTTATTCTACGATAtttttttAGC
TGAGTCTTTAAACTCAAATATCTTGGCTAATATTCCCAATTTTTTCACTT
AGGTATTTGTTCAACATTCTGGTGGAGTGTAGTTTCTATGACAACCGTTG
GTTATGGTGACGTCACACCCAAATCACCACTCGGCCGCTTTATAGCGTTA
TTTTGGTTGATAGTAGGAATATTATTGGTTTGTGTGATCACGGCCACAAT
GACAGATGCGGTGTCCGGTGTTGAAAGCCTTGGTGTTTACGGACAATCTA
TGGCTGTTTTACAGGTAATAAAGTAACACTTAGAGCctaattaaaaatat
ttgaattgagGCCTGAATCGCCATGAAAGAATTATCGATACTAGTTAAAA
AGCCTCTGCTCTCCCAATCCTCATTCTTAGTCAGTTCTTTGATATCTTAG
TTTACGACCACATCGGGTGAGCTGAAGGCTCCTCTTCTTGTAGCTACACA
CCCCCAACGGaaaaggaaaaaaggggaaaaagaCTATCTTCCTCCTAATT
TTATCTTTGATCCGCCTCCCAACTTAATATCGCTAACTAAGAAATATGGA
ACTAAAAGCCCTGCGGCATCAGGTCAGGTCAAATCAACCAAGTGTTACAT
TGCTAGTTGGTGACCTTCACGACGTAAtgtttatacggaagcacctaAAA
TATAGCCTGGGTGTTTGCCAtcagttttattgtttaaatttaaaattagt
ggcaaacaccTGGTCTTTTTGGGATGCTTCCATACgaaacattacatcat
taatacatacaccttttcgaccgtagccggcaattgccgcgcgggcaatT
TTTTGTCCCTTTTACGACCCTAAAATcttcccagtctttttttcgcacct
atagacaatagaaaaaggtgtcaaaaaaggattgaatcGAGATTAGGGAG
TTTAGGAttttaattaaataattaagtgacaCGCGCCTGGACTgcgtgac
tacggtcgaaaaggtgggTGAATATCACGAATATGATTTTACAGGATTCG
TACGAAGCAGAAGTGGCGGCGAAAGATTATTCCGCCAAAATAGTTCCCGC
ACCCTCTTACGAAGAAGTATTGAACTTAGTGCGAGAAGAGAAAGTGTTTG
GAGCGATGATCAGCGCTGATATTGCTGCGTGGTACCAAGAGGAGATCCAC
GGTCACGATGGTCAAAGTCCACCTTTACATATTGTTCAAACATTACCAGC
ACAGCTTTTCATTCGATGTACCATGAGCAGTAAGCCTAGTCAAGAGTTAA
TCAAAGTGCTCAGATGCATGCATAAGAATCGAGAGGAGATTTATGATTAC
ATGCAGACGAAGTATGAAAGACATTGTCATATGGAGACCATCTATATCGG
AACGGTTGGAGAGCTATTCGAAAATAACATCTCTGTAAAGGTGTTTGTTG
GTATGGTAGGTGTTTTAGTTTCCCTGGGTTTGTTTTATGATGTTTTAAAG
TTCATGAGAAGTCGACGTACACTGAGAGAAAATACTCATCCAAAAGCAAT
TTTGGATAGACTGTTAGGGAAACAAAATGATACGTTGAAATTACACGAAA
CAAGTTCCTTCTCAGAGATGGATGATAAATATGACCTTGTTGCGATATAG
TTAACATAAATATCCTTATTGaaaaaaaGGGTTATATTTAAAACTACATT
TATGCAAAACCATTGCTTTTGTTCTATATGGAATTATTAAAGTATTTAAT
AGCAAAGGTTATCATTtctaggcaaaattgtaagtagagtatttcttttt
taaagcacttgcaatttttttctatagTAGGGTTGAGT Coding sequence (CDS) from alignment at sc0000102_pilon:673389..676726+ >MSTRG.13116.1.p1 ID=MSTRG.13116.1.p1|Name=MSTRG.13116.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5202bp|location=Sequence derived from alignment at sc0000102_pilon:673389..676726+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCTATTATCAATTTTGTTacaacttttgattttaaaatcaaaaca
agctgTAAGCGCTACGACCACCACGCCATCACAAGCAGAAAACGCTACAA
CCACCACACCTTCACTAGCAGAAAACGCTACGACCACCACGCCATCACAA
GCAGAAAACGCTACAACCACCACACCTTCACTAGCTGAAAACGCTACGAC
CACGACACCATTACTAGCAGAAAACGCTACGACCACCACACCATTACTGG
TTGAAAGCGCTACGACCACCACGTCATCACAAGCCGAAAACACTATGAAC
ACCACCACGTCATCAAAAGCTGAAAACACTACGAGCGCCACACAATTACT
AGCTGAAAACGCTAAGACCACCACACTTTCGCTAGCTGAAAACCTTACGA
CCACCAAATCATCACTGATGAAAGGTGTATTCTGGGAAGTCAAACCATAC
ATGTTCACAAACGACCGTGGCGAAATCGATGGAATCATTCCGAAGATATT
CACAAGAGCTAACTCCTTTTGTAATCCAAACCCAAACGTCACTATAATCG
ATTTTGTGAAGAAATTCGAATCTAGGAAAGACTTTATTCAAAACATTAAG
AAGGGGTTCCCATACGGCAAAGATTATCTGACAGGGATCAAAGAAGGTGA
AATCTTTCTTTCGCCACAGATGCAAGAGATGGGTGATGAATGGGAGAATG
AAAACACACTTCGATCCTTCTCCCtaatgaaaacaaacaaaatggtggTC
ATCCTCCCACGTAAAATGATCGATTTGCCACATAAAATCTTACGAGGAAT
AGCtagtactaaaattatttttgtcattgTGATTCCTATGGCCATCTTTT
TCAGTATTCTCATCTGGTTCGTTGAACGGATTTGGAATGAGAATGTTGAA
CGATCGTTTGTTTTAGGTATTTGTTCAACATTCTGGTGGAGTGTAGTTTC
TATGACAACCGTTGGTTATGGTGACGTCACACCCAAATCACCACTCGGCC
GCTTTATAGCGTTATTTTGGTTGATAGTAGGAATATTATTGGTTTGTGTG
ATCACGGCCACAATGACAGATGCGGTGTCCGGTGTTGAAAGCCTTGGTGT
TTACGGACAATCTATGGCTGTTTTACAGGATTCGTACGAAGCAGAAGTGG
CGGCGAAAGATTATTCCGCCAAAATAGTTCCCGCACCCTCTTACGAAGAA
GTATTGAACTTAGTGCGAGAAGAGAAAGTGTTTGGAGCGATGATCAGCGC
TGATATTGCTGCGTGGTACCAAGAGGAGATCCACGGTCACGATGGTCAAA
GTCCACCTTTACATATTGTTCAAACATTACCAGCACAGCTTTTCATTCGA
TGTACCATGAGCAGTAAGCCTAGTCAAGAGTTAATCAAAGTGCTCAGATG
CATGCATAAGAATCGAGAGGAGATTTATGATTACATGCAGACGAAGTATG
AAAGACATTGTCATATGGAGACCATCTATATCGGAACGGTTGGAGAGCTA
TTCGAAAATAACATCTCTGTAAAGGTGTTTGTTGGTATGGTAGGTGTTTT
AGTTTCCCTGGGTTTGTTTTATGATGTTTTAAAGTTCATGAGAAGTCGAC
GTACACTGAGAGAAAATACTCATCCAAAAGCAATTTTGGATAGACTGTTA
GGGAAACAAAATGATACGTTGAAATTACACGAAACAAGTTCCTTCTCAGA
GATGGATGATAAATATGACCTTGTTGCGATATAGATGAAGCTATTATCAA
TTTTGTTacaacttttgattttaaaatcaaaacaagctgTAAGCGCTACG
ACCACCACGCCATCACAAGCAGAAAACGCTACAACCACCACACCTTCACT
AGCAGAAAACGCTACGACCACCACGCCATCACAAGCAGAAAACGCTACAA
CCACCACACCTTCACTAGCTGAAAACGCTACGACCACGACACCATTACTA
GCAGAAAACGCTACGACCACCACACCATTACTGGTTGAAAGCGCTACGAC
CACCACGTCATCACAAGCCGAAAACACTATGAACACCACCACGTCATCAA
AAGCTGAAAACACTACGAGCGCCACACAATTACTAGCTGAAAACGCTAAG
ACCACCACACTTTCGCTAGCTGAAAACCTTACGACCACCAAATCATCACT
GATGAAAGGTGTATTCTGGGAAGTCAAACCATACATGTTCACAAACGACC
GTGGCGAAATCGATGGAATCATTCCGAAGATATTCACAAGAGCTAACTCC
TTTTGTAATCCAAACCCAAACGTCACTATAATCGATTTTGTGAAGAAATT
CGAATCTAGGAAAGACTTTATTCAAAACATTAAGAAGGGGTTCCCATACG
GCAAAGATTATCTGACAGGGATCAAAGAAGGTGAAATCTTTCTTTCGCCA
CAGATGCAAGAGATGGGTGATGAATGGGAGAATGAAAACACACTTCGATC
CTTCTCCCtaatgaaaacaaacaaaatggtggTCATCCTCCCACGTAAAA
TGATCGATTTGCCACATAAAATCTTACGAGGAATAGCtagtactaaaatt
atttttgtcattgTGATTCCTATGGCCATCTTTTTCAGTATTCTCATCTG
GTTCGTTGAACGGATTTGGAATGAGAATGTTGAACGATCGTTTGTTTTAG
GTATTTGTTCAACATTCTGGTGGAGTGTAGTTTCTATGACAACCGTTGGT
TATGGTGACGTCACACCCAAATCACCACTCGGCCGCTTTATAGCGTTATT
TTGGTTGATAGTAGGAATATTATTGGTTTGTGTGATCACGGCCACAATGA
CAGATGCGGTGTCCGGTGTTGAAAGCCTTGGTGTTTACGGACAATCTATG
GCTGTTTTACAGGATTCGTACGAAGCAGAAGTGGCGGCGAAAGATTATTC
CGCCAAAATAGTTCCCGCACCCTCTTACGAAGAAGTATTGAACTTAGTGC
GAGAAGAGAAAGTGTTTGGAGCGATGATCAGCGCTGATATTGCTGCGTGG
TACCAAGAGGAGATCCACGGTCACGATGGTCAAAGTCCACCTTTACATAT
TGTTCAAACATTACCAGCACAGCTTTTCATTCGATGTACCATGAGCAGTA
AGCCTAGTCAAGAGTTAATCAAAGTGCTCAGATGCATGCATAAGAATCGA
GAGGAGATTTATGATTACATGCAGACGAAGTATGAAAGACATTGTCATAT
GGAGACCATCTATATCGGAACGGTTGGAGAGCTATTCGAAAATAACATCT
CTGTAAAGGTGTTTGTTGGTATGGTAGGTGTTTTAGTTTCCCTGGGTTTG
TTTTATGATGTTTTAAAGTTCATGAGAAGTCGACGTACACTGAGAGAAAA
TACTCATCCAAAAGCAATTTTGGATAGACTGTTAGGGAAACAAAATGATA
CGTTGAAATTACACGAAACAAGTTCCTTCTCAGAGATGGATGATAAATAT
GACCTTGTTGCGATATAGATGAAGCTATTATCAATTTTGTTacaactttt
gattttaaaatcaaaacaagctgTAAGCGCTACGACCACCACGCCATCAC
AAGCAGAAAACGCTACAACCACCACACCTTCACTAGCAGAAAACGCTACG
ACCACCACGCCATCACAAGCAGAAAACGCTACAACCACCACACCTTCACT
AGCTGAAAACGCTACGACCACGACACCATTACTAGCAGAAAACGCTACGA
CCACCACACCATTACTGGTTGAAAGCGCTACGACCACCACGTCATCACAA
GCCGAAAACACTATGAACACCACCACGTCATCAAAAGCTGAAAACACTAC
GAGCGCCACACAATTACTAGCTGAAAACGCTAAGACCACCACACTTTCGC
TAGCTGAAAACCTTACGACCACCAAATCATCACTGATGAAAGGTGTATTC
TGGGAAGTCAAACCATACATGTTCACAAACGACCGTGGCGAAATCGATGG
AATCATTCCGAAGATATTCACAAGAGCTAACTCCTTTTGTAATCCAAACC
CAAACGTCACTATAATCGATTTTGTGAAGAAATTCGAATCTAGGAAAGAC
TTTATTCAAAACATTAAGAAGGGGTTCCCATACGGCAAAGATTATCTGAC
AGGGATCAAAGAAGGTGAAATCTTTCTTTCGCCACAGATGCAAGAGATGG
GTGATGAATGGGAGAATGAAAACACACTTCGATCCTTCTCCCtaatgaaa
acaaacaaaatggtggTCATCCTCCCACGTAAAATGATCGATTTGCCACA
TAAAATCTTACGAGGAATAGCtagtactaaaattatttttgtcattgTGA
TTCCTATGGCCATCTTTTTCAGTATTCTCATCTGGTTCGTTGAACGGATT
TGGAATGAGAATGTTGAACGATCGTTTGTTTTAGGTATTTGTTCAACATT
CTGGTGGAGTGTAGTTTCTATGACAACCGTTGGTTATGGTGACGTCACAC
CCAAATCACCACTCGGCCGCTTTATAGCGTTATTTTGGTTGATAGTAGGA
ATATTATTGGTTTGTGTGATCACGGCCACAATGACAGATGCGGTGTCCGG
TGTTGAAAGCCTTGGTGTTTACGGACAATCTATGGCTGTTTTACAGGATT
CGTACGAAGCAGAAGTGGCGGCGAAAGATTATTCCGCCAAAATAGTTCCC
GCACCCTCTTACGAAGAAGTATTGAACTTAGTGCGAGAAGAGAAAGTGTT
TGGAGCGATGATCAGCGCTGATATTGCTGCGTGGTACCAAGAGGAGATCC
ACGGTCACGATGGTCAAAGTCCACCTTTACATATTGTTCAAACATTACCA
GCACAGCTTTTCATTCGATGTACCATGAGCAGTAAGCCTAGTCAAGAGTT
AATCAAAGTGCTCAGATGCATGCATAAGAATCGAGAGGAGATTTATGATT
ACATGCAGACGAAGTATGAAAGACATTGTCATATGGAGACCATCTATATC
GGAACGGTTGGAGAGCTATTCGAAAATAACATCTCTGTAAAGGTGTTTGT
TGGTATGGTAGGTGTTTTAGTTTCCCTGGGTTTGTTTTATGATGTTTTAA
AGTTCATGAGAAGTCGACGTACACTGAGAGAAAATACTCATCCAAAAGCA
ATTTTGGATAGACTGTTAGGGAAACAAAATGATACGTTGAAATTACACGA
AACAAGTTCCTTCTCAGAGATGGATGATAAATATGACCTTGTTGCGATAT
AG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102_pilon | genome | sc0000102_pilon:673389..676726 + |
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