MSTRG.13109.1.p1 (mRNA) -

Overview
NameMSTRG.13109.1.p1
Unique NameMSTRG.13109.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000102_pilon:614314..620074+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13109.1.p1 ID=MSTRG.13109.1.p1|Name=MSTRG.13109.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5761bp|location=Sequence derived from alignment at sc0000102_pilon:614314..620074+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTCATCTTCATTTTAGATTATAAAATAAAGGCAGTATGAGGTTGAAAT
TTCTACGCAATGTTTTGATTGTGGTACTGTTTACATTGGCAGTCAGTCAC
TTAATCCATGCTTCTCCTCCACTTGATGCATCAACCGTCAGCAAAGCTAA
AGGAGCTTCCAAAGTAGCTGGCTCTCTTTCAGATGTGTCATCTAAAGCAA
GCAAATTCACAAAAGTACTCAATGGAGGTCTTTCTACATTCAGCACATAT
GTTTACGGGATTACAGCAACAATGGCGGTGATTGATTTGATATGGCCTGG
AATCATTCCTACAAGCGAGCCTGCTTACGTGGCCGAGATGAGAGCTTATT
TTGAGGTTCTGAAAGCAGAGTTTCGCGTTGTGAAGAATCAGATCAATGAT
TTGAAATTATACGTTCAAGAACGGAGCACTGATCAAATATACGCCGGTTA
CGTCATTTCAATTCATACCACGGTAATTTTTCCGCAACTATCTTTCTGAA
CACGTTCCCTGTATTAGTGCGAATTCTTTTGTCAGTGGGGATAGAATGat
gtcattactgaaaaggtatTATTAGGAGaaaaaaaGTCTGTAGTTTTGTC
TTAATTGGGcggaaattttaaaaagcacaaaaatccagtttggattttca
aagttttcacatCATTCCAAATGAAGATTAAAAGCTCAGTCCAATGGAGA
CTTCCAAAGGGAAATTTCGGAATTTTaactctaaaaaaaattaactctgA
CGATTTCTAGATTCAATGCCTGCAAATTCTTAGCAAGCGTATAGTAAGTG
TATGAGTGTATTGAGTAGCATAAATATAAATTTGAGTCTGCGAGCagaaa
ttttcgaattgtaaTTCGCCATTCGCCGGGCCTAAATAAAACCCCTGAAT
CAAGAAACTTCTTCAGCTGTGTCTGTGAAAGGACATTATTATTTAATGTA
TCTTCCATACGATTTGCATTTTTATACAAaggaaagaacaatttttttca
ctgtTGGTGTTGCGTGAGCACAaatgagaaattcttttgtttattatGCT
TCGTCAGCATAGAAGGCGCGTCTCCTGTTTACatcaaaaacagatttttt
atatttggcttagagataccttttatggtcAAGAGAGACACCTCTAAATC
TTTTGACCCAATTTTTCCAATGCTGGGATATTTaactttgaaatctctaa
aaatgagtctttacacagtctttacgttgcatttctattgttttcaagta
aaaatttgaaaattcaaagtcgaatatctcagctttggaaatgATTGGGT
CAAAAACTTTAGAGGTGTTTCATaggaccataaaaggtatctctaagcta
aatatcaaaaatcatctgataatccctttaacAATAATACTATTTTCTAC
CAGGAATTGAGTTACCAAGATTACATGGATGCATCTGCATCATTGAGAGA
TGCATATGGAAAATCGTTCGTTCAGAATTACGATCAGTTAGGAAACCATG
CAGATAAATTGTACACCGGACTTGTTATTGCTGATGACAATCTAAACATT
GCCAAAAATGCTATTTCATACACTAAAGGTAATCCGTTTATTTCTTTGAA
TAGTAAAGGCCGGTATCCATTTATTTTCGCGCAAAGTGGAGGACTGtttt
tttCTCAGCCTTTTTTGTCTAAGAAAAGATtgcgtcataaaaaagtttcg
tgtgaacgaaaaaaaagttgaaggaagttcaacttttttcaaccgttacg
tcaattttgaccaatgcaattgtttcattttccaaccgaccttacaaaaa
cgtaagaaagttttcgctcatttcgcgcgaaagtggagaccagccttaaA
GTTGAtctacaaaaatatttagcagTTCAACACAACATACAAAAACCCAA
ACACCAAGGTTTTGGAAAGGCCATATACCAGTCTCTGCCAATAGTTTATA
GCTCGGAACTACTTCATTTCCAGCCGAATATAATTAGACTGCAcacccct
tttcacagacccggaaggattttttcagccaccGGGGATAAAtataacag
actgaaactcgatatggggattgatatttctatATTCTTTATGACTGggg
tttaaattcttttgttttcaagtcagaaaatccagtggggatgaagaAAT
AGCACAATAACTTtactgtgagaagggggtgtgaaaGCTGAGTCCAAGAG
CGTTTTAACGCTGTGAATAATTTTACCTTAACGCACGTGAAAAAGAGGGC
TTAAAtcgattttaaagatttttatggGTTCTGATTCTGTAAATCGTact
catttttgctaaaatagTCGTGTTGGCATTTTTGCACCAAGTTGGCAGGA
ATATCCAATTTAAACATTGAAACCAAGGATAAGACAATGTGAACTAAATa
gctcgaacacgcacgggaaacacttgttcgagttaagggtATTTCAAGTT
ATGgaataaggtttataaggcattgttaactgaagggaccaggaAAACTT
GTACGAGTTAAGGAGACACTCAAGTTTTAAAGTTTCGAGTTATGAGAGTC
TACTGTATCTATATAAAGATTTAATTTACTTCGCTTTTAAGGTGACAGAG
ACAGAATTTTGGAGATCATGTTTGAGTTGTTCAACGTCATTAACATGGGT
ATCAAGCATGAAGCACTTTATTACAAATTGACGGACGATACAGAACAAAT
TGCCGTGTTGGACGACCGATGGGGTTCTCGAATGAACAACCTACAGAAAG
TGATGAAAGCAATCGATGATGAGGTTGTCAAAGGTGCAAACGATCGAATG
CAAACAgatttcaatgaaaatgtcGTTGAATTGAAAGATAAAGACAACAA
GAAAATGGCGCAGAATTTGTACGATTTCTTCAGTGAGAAATACTACTGGA
GAGGACTGGGTGGTACTTGTTTACTCAAAGTCTGTTTCAGGCTTTAGCAA
CCATGCTTATAATTACTGCCGTAACAATTGCATTTTCCGAAAGAGGTTGG
GTGGCGGTGTGGATAAAACCATCTACGTGTTCCATGTGAATAAAGCTTCT
GGATCATGGATGACGAAAAGTAAAGCTAGTAAGATCCTCTCAACTGGACC
TTACACCTACAAAGGTAAATGTTATAAGTATGAATGGTTCTTCTTCTCAA
GATATCGGAAAAGCTACTCATGTGATAAACCACAGAAGGACTTAGCGAAA
ACCAGAGATGCAGTGCGAGGTGAGCTTAAAGTTTGTAGCATTACTAAAGC
CATCGTGATGCTTAAGAAAAAGCATAGTTACGGCATCGTTGGAGATGATA
GAATCAAAGTTCATTTGAAGAAAGGAGATTTCAATGCATTTGCAGTTGGC
CCTTATGGATCTTCGAGTGCTCAAGAATCTGTGGAAGGTTATTCAAGTAA
GCTTATAAAATTCACTATTTGTTTAAGAAAATTATTCAAACAAACGATTT
GAAGTTGCAAAATGAAGTAACGGGTTCTAGGTTCTATTTTATCGTCAGAT
AGTTTATACGTTTTATAAGTTATTAAGCAGTAGAGCTATCTACATTTATT
TGTGTAGCAAATCTTGATTGACTATGAGGACAATAGTTAAAGCAACTTTT
TGGCAAGTTCGCAATGCATGCGTCCCTGAAATCGTCGGTCTTATTCGTCG
TGAGAATCGAAACTGACGTACTTTTCGATGTCGGACTTTATAACACATGC
TATCAATGTATTACATGCATGTTATGTGAAATTAGCTATATCAACTAAAA
ATCGGGAAGCATACATTGCGAACTtgcctttttttgatttttttattcag
ccaagattccctaaaatattttttctttgtttttcgtGCAGTAAATGGAG
GCTGGACTTCTTGGACTCCTTATACGAGTTGTTCAAAAACATGTGGAGGT
GGAATTAAAACAATATCAAGATATTGTAGAAATCCAGTTCCTCAAGATGG
TGGAAAGTCTTGTTCGGGGCGTAGTACTTATAGCAGATCTTGCAACACGT
TCAGCTGCTTCTGTAAGCATTCTATTCGCATTTTATTCAACACccatctg
gcacacaacgttgtttcaacgttcacataacgttatatggatgttgtgaa
cgttagataaacgttgaaacaacgttgtttgccagctggGCAGTTTGGTT
CCCTTTCCAATCGCTTCTTttagcttcaatcctttttgatACTGCGAGGC
TATGAATACTAAACTGTGACGACTAATCAGGTTTCTTTtaagttgtttca
acgttcatcaacgttatatggacgttgtgaacgttagatgaatgttgaaa
caatgttgtgtgccagctggggataAAGCGGTACCAATTAAATTACGAAT
AAGAAACATAGAAAAGACTCAATGAAAAAGAGCTGGTTGAATCCATTGCA
TATGAATACGATATTTTAGATCGGAGCAACGAaatcccagctggtacaca
acgttgttttaacgttcaaataacgttatttggacgttaagaatgtcaca
tggacgttgttttgacgttgtgtgctgTCTGGGATAGCATcgttttcttt
taaatcaatAAGGTAGAGGCTTTGAAATGTAAAATCGCTTACAAAGACCT
ATAAAGTAAATTGTTTGATTCTATTCCTTTCAGCGAAgacatttttgaag
aaaaaaatcgaaagcaTCATGATTTCAAAGAAGAAATTGAGTAACACAGA
CTTTGCTGTATATCTTCGTGCGCAACTCAAAACAACTTATCCAGAATATC
GTTTTGCCGTCAACGCGTACAAATCCATCCGTGGTTCAAGCAAACATTCG
ATGCAGGGATACAGTTACGTTTACATCTTCCGTAAGCACGGCCGTAATGT
GGTCGTGTCCTACACTAAAAAGTCAAACAAAGTTCCGAATTCGTCCACTT
TGAGGGCGATCGAAAAAAGAATTGTTGCTGCTATCAAAAATAAGGTTAGA
AGATATCTTTTACATCTCCTCCACGGGTTTTGCTTTGGTGTTTGTTTATC
CTGGTGAACgacaaatgtcaaattttgatgacagtttttCGTACTTTAGA
GCTGATAGCAAATTCGAATTTCCACAACAGTTTTTGAATAAAGCGTTTTT
TGTTTCACTAAACACTGTTCTAtttacagttgatgctctctaattcaacg
ttctactattcgataggctcctcaatttgatgaaatttaaagtccccgtc
aacaagaaactctcatacacgacgctcccttattcgataagttcccttat
tcccttattcgatgaaaactGCTAACAAAAGTATAATTTAACCGATTTGA
CAAAAATGCATGGACTCACCACTATGCtccctttttcatttttatacagG
GTAAAGACGCAAAGAAATCACGTCAATTAGCATGGGCCGCTTTGAAGAAA
GAAGGTTATCGTGTTGCCATGGTACTAGTGGTGCGATTTGGAAACGGGTT
ACGCACAAGATCGACTGGCGGCGGTGTAACCttcgaaaatttcaattctT
CTGGGAGTCACAAATCTTCGCTCGTTATtatgcttggaaaagcttaacTT
TTTTGTTGGAGTTTTGTTATCATAATTACAATTTCATAACACCTTAAGTG
TTTTAACTTTGGCGGGATAAATTTGGAACATTTGGCAGATTTCGGTTAAA
TCCTCCAAattaaattcaccaaaattttgaaaaattgaccgTCCGCCAAT
TCAACtacccgccaaatttaacaaaactCTTTTtagaatagaaattctat
ccaAAATCAGC

Coding sequence (CDS) from alignment at sc0000102_pilon:614314..620074+

>MSTRG.13109.1.p1 ID=MSTRG.13109.1.p1|Name=MSTRG.13109.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4068bp|location=Sequence derived from alignment at sc0000102_pilon:614314..620074+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACGAAAAGTAAAGCTAGTAAGATCCTCTCAACTGGACCTTACACCTA
CAAAGGTAAATGTTATAAGTATGAATGGTTCTTCTTCTCAAGATATCGGA
AAAGCTACTCATGTGATAAACCACAGAAGGACTTAGCGAAAACCAGAGAT
GCAGTGCGAGGTGAGCTTAAAGTTTGTAGCATTACTAAAGCCATCGTGAT
GCTTAAGAAAAAGCATAGTTACGGCATCGTTGGAGATGATAGAATCAAAG
TTCATTTGAAGAAAGGAGATTTCAATGCATTTGCAGTTGGCCCTTATGGA
TCTTCGAGTGCTCAAGAATCTGTGGAAGGTTATTCAATAAATGGAGGCTG
GACTTCTTGGACTCCTTATACGAGTTGTTCAAAAACATGTGGAGGTGGAA
TTAAAACAATATCAAGATATTGTAGAAATCCAGTTCCTCAAGATGGTGGA
AAGTCTTGTTCGGGGCGTAGTACTTATAGCAGATCTTGCAACACGTTCAG
CTGCTTCTCGAAgacatttttgaagaaaaaaatcgaaagcaTCATGATTT
CAAAGAAGAAATTGAGTAACACAGACTTTGCTGTATATCTTCGTGCGCAA
CTCAAAACAACTTATCCAGAATATCGTTTTGCCGTCAACGCGTACAAATC
CATCCGTGGTTCAAGCAAACATTCGATGCAGGGATACAGTTACGTTTACA
TCTTCCGTAAGCACGGCCGTAATGTGGTCGTGTCCTACACTAAAAAGTCA
AACAAAGTTCCGAATTCGTCCACTTTGAGGGCGATCGAAAAAAGAATTGT
TGCTGCTATCAAAAATAAGGGTAAAGACGCAAAGAAATCACGTCAATTAG
CATGGGCCGCTTTGAAGAAAGAAGGTTATCGTGTTGCCATGGTACTAGTG
GTGCGATTTGGAAACGGGTTACGCACAAGATCGACTGGCGGCGGTGTAAC
CttcgaaaatttcaattctTCTGGGAGTCACAAATCTTCGCTCGTTATta
tgcttggaaaagcttaaATGACGAAAAGTAAAGCTAGTAAGATCCTCTCA
ACTGGACCTTACACCTACAAAGGTAAATGTTATAAGTATGAATGGTTCTT
CTTCTCAAGATATCGGAAAAGCTACTCATGTGATAAACCACAGAAGGACT
TAGCGAAAACCAGAGATGCAGTGCGAGGTGAGCTTAAAGTTTGTAGCATT
ACTAAAGCCATCGTGATGCTTAAGAAAAAGCATAGTTACGGCATCGTTGG
AGATGATAGAATCAAAGTTCATTTGAAGAAAGGAGATTTCAATGCATTTG
CAGTTGGCCCTTATGGATCTTCGAGTGCTCAAGAATCTGTGGAAGGTTAT
TCAATAAATGGAGGCTGGACTTCTTGGACTCCTTATACGAGTTGTTCAAA
AACATGTGGAGGTGGAATTAAAACAATATCAAGATATTGTAGAAATCCAG
TTCCTCAAGATGGTGGAAAGTCTTGTTCGGGGCGTAGTACTTATAGCAGA
TCTTGCAACACGTTCAGCTGCTTCTCGAAgacatttttgaagaaaaaaat
cgaaagcaTCATGATTTCAAAGAAGAAATTGAGTAACACAGACTTTGCTG
TATATCTTCGTGCGCAACTCAAAACAACTTATCCAGAATATCGTTTTGCC
GTCAACGCGTACAAATCCATCCGTGGTTCAAGCAAACATTCGATGCAGGG
ATACAGTTACGTTTACATCTTCCGTAAGCACGGCCGTAATGTGGTCGTGT
CCTACACTAAAAAGTCAAACAAAGTTCCGAATTCGTCCACTTTGAGGGCG
ATCGAAAAAAGAATTGTTGCTGCTATCAAAAATAAGGGTAAAGACGCAAA
GAAATCACGTCAATTAGCATGGGCCGCTTTGAAGAAAGAAGGTTATCGTG
TTGCCATGGTACTAGTGGTGCGATTTGGAAACGGGTTACGCACAAGATCG
ACTGGCGGCGGTGTAACCttcgaaaatttcaattctTCTGGGAGTCACAA
ATCTTCGCTCGTTATtatgcttggaaaagcttaaATGACGAAAAGTAAAG
CTAGTAAGATCCTCTCAACTGGACCTTACACCTACAAAGGTAAATGTTAT
AAGTATGAATGGTTCTTCTTCTCAAGATATCGGAAAAGCTACTCATGTGA
TAAACCACAGAAGGACTTAGCGAAAACCAGAGATGCAGTGCGAGGTGAGC
TTAAAGTTTGTAGCATTACTAAAGCCATCGTGATGCTTAAGAAAAAGCAT
AGTTACGGCATCGTTGGAGATGATAGAATCAAAGTTCATTTGAAGAAAGG
AGATTTCAATGCATTTGCAGTTGGCCCTTATGGATCTTCGAGTGCTCAAG
AATCTGTGGAAGGTTATTCAATAAATGGAGGCTGGACTTCTTGGACTCCT
TATACGAGTTGTTCAAAAACATGTGGAGGTGGAATTAAAACAATATCAAG
ATATTGTAGAAATCCAGTTCCTCAAGATGGTGGAAAGTCTTGTTCGGGGC
GTAGTACTTATAGCAGATCTTGCAACACGTTCAGCTGCTTCTCGAAgaca
tttttgaagaaaaaaatcgaaagcaTCATGATTTCAAAGAAGAAATTGAG
TAACACAGACTTTGCTGTATATCTTCGTGCGCAACTCAAAACAACTTATC
CAGAATATCGTTTTGCCGTCAACGCGTACAAATCCATCCGTGGTTCAAGC
AAACATTCGATGCAGGGATACAGTTACGTTTACATCTTCCGTAAGCACGG
CCGTAATGTGGTCGTGTCCTACACTAAAAAGTCAAACAAAGTTCCGAATT
CGTCCACTTTGAGGGCGATCGAAAAAAGAATTGTTGCTGCTATCAAAAAT
AAGGGTAAAGACGCAAAGAAATCACGTCAATTAGCATGGGCCGCTTTGAA
GAAAGAAGGTTATCGTGTTGCCATGGTACTAGTGGTGCGATTTGGAAACG
GGTTACGCACAAGATCGACTGGCGGCGGTGTAACCttcgaaaatttcaat
tctTCTGGGAGTCACAAATCTTCGCTCGTTATtatgcttggaaaagctta
aATGACGAAAAGTAAAGCTAGTAAGATCCTCTCAACTGGACCTTACACCT
ACAAAGGTAAATGTTATAAGTATGAATGGTTCTTCTTCTCAAGATATCGG
AAAAGCTACTCATGTGATAAACCACAGAAGGACTTAGCGAAAACCAGAGA
TGCAGTGCGAGGTGAGCTTAAAGTTTGTAGCATTACTAAAGCCATCGTGA
TGCTTAAGAAAAAGCATAGTTACGGCATCGTTGGAGATGATAGAATCAAA
GTTCATTTGAAGAAAGGAGATTTCAATGCATTTGCAGTTGGCCCTTATGG
ATCTTCGAGTGCTCAAGAATCTGTGGAAGGTTATTCAATAAATGGAGGCT
GGACTTCTTGGACTCCTTATACGAGTTGTTCAAAAACATGTGGAGGTGGA
ATTAAAACAATATCAAGATATTGTAGAAATCCAGTTCCTCAAGATGGTGG
AAAGTCTTGTTCGGGGCGTAGTACTTATAGCAGATCTTGCAACACGTTCA
GCTGCTTCTCGAAgacatttttgaagaaaaaaatcgaaagcaTCATGATT
TCAAAGAAGAAATTGAGTAACACAGACTTTGCTGTATATCTTCGTGCGCA
ACTCAAAACAACTTATCCAGAATATCGTTTTGCCGTCAACGCGTACAAAT
CCATCCGTGGTTCAAGCAAACATTCGATGCAGGGATACAGTTACGTTTAC
ATCTTCCGTAAGCACGGCCGTAATGTGGTCGTGTCCTACACTAAAAAGTC
AAACAAAGTTCCGAATTCGTCCACTTTGAGGGCGATCGAAAAAAGAATTG
TTGCTGCTATCAAAAATAAGGGTAAAGACGCAAAGAAATCACGTCAATTA
GCATGGGCCGCTTTGAAGAAAGAAGGTTATCGTGTTGCCATGGTACTAGT
GGTGCGATTTGGAAACGGGTTACGCACAAGATCGACTGGCGGCGGTGTAA
CCttcgaaaatttcaattctTCTGGGAGTCACAAATCTTCGCTCGTTATt
atgcttggaaaagcttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13109MSTRG.13109Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13109.1.p1MSTRG.13109.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13109.1.p1.exon1MSTRG.13109.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13109.1.p1.exon2MSTRG.13109.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13109.1.p1.exon3MSTRG.13109.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13109.1.p1.exon4MSTRG.13109.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13109.1.p1.exon5MSTRG.13109.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13109.1.p1.exon6MSTRG.13109.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102_pilongenomesc0000102_pilon:614314..620074 +