MSTRG.1309.2.p2 (mRNA) -

Overview
NameMSTRG.1309.2.p2
Unique NameMSTRG.1309.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1615560..1621445-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1309.2.p2 ID=MSTRG.1309.2.p2|Name=MSTRG.1309.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5886bp|location=Sequence derived from alignment at sc0000006_pilon:1615560..1621445- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTGAATTTGATACACCAACTGTTATATGTGCTCACATAAATGCTAGAC
AACTTAATTACCTGTTATCTTGTTGATATGATAAATAATATTCTTTTGGA
TGAAAATGGCTCAAAATCTTTCAAAGAAAATCAAGATTACCAAATTCCTA
CTTTTATCTTACATCATTTTATTCTTTGTAAGTTTTGTTTATTGTCCCTT
TCACTTTCATATTTTCCAAAAAAAAATTACTGAAACCCACAGTAAATAAC
TTAAAATTTCATAAAAAAGAGTAAGAAACATGAGTGCTTGTTACATTTTA
TCTGAAAATTACTCTATCGGTTCAATATTTTAGTTACTTGGATCAGCACT
GTTAGTACTAGCCATGGAAAGTAGATTTGGAAAGCAAGATTATATCACAG
TCACTGAAAAAGTCAGTTATATCACTGGATACATGGCAGCAAACACCTTC
TGTATTATCATTGGTGTGATCATGGTGATTGTTAGTTTCTTTGGATGTTG
TGGTGTCATTGCAGAACATTCAATAATGGTTCTTGTTGTAAGTTCAACTG
ATTTTTTGTTCATACACAGCTATTTGGTCTTAAATGATTTTATCAAATAA
CTAAACGCTCACCCTATTTTCACTTTTGCCCTTCTGGATTTGACTGGTTT
AAAAATCAGTTGGAATAAAATTGAACATCAAGTATTTTGTCTGTAGTGGC
TTTGTATTTAAAAACTCAAGATGTTTGTAATGAAAGGGAGAGATGAAATC
TGTTAAGTAATCAAAGTTCTTTCACAGAATTTTTTTTCTCTCATCTTATC
AGGCAAAATGATCTTATGTTGCTTTTAACCAAAGAACTATTTTATATGTG
AGTTGAATCAGTAATGAATCACTCTTCATCGCAGGGGCTCCATTTAAATC
AAAACTTTATCAATTCCTGCTAAGTTGTTTGAATATTTCTTGACAATATT
TTTCTAATCCTCTTTGAAGGGTCTACTTGTTATGTTTTCCCTCACGTTAC
ATTTTATATCATCCTCTCTCCATCTTAGTGTGGTTTTATGAAAATGATGA
ATTAAAAATAGTCCTCTTTCTTATGTGAATGTATATTGTAAGTTCTAGTA
CTGTTTTGTTTCAAAGATGTTCTGGTCTAGTACTTTGGTCAAATTTTCTT
TCTTTATAGCTTTTCGTCTTCATGGCAATTATTTTCATCTTTGAAATGGC
CATTTGTATATACGGGTTTGCTAAAAGTGATCAGGTAAAGCTTCTCAAGA
ATGTGATATATCAAACAATAACAAATCTTATAATCACATTTTATGTCTAC
TCTATGCTAACATTTAATGTCAACTAGCTTAATGCTCTAAACTGATTTAC
CAAAAGGACATGATTTCTCTCTAATCAACTGAAAACTATCAGTTGTTTAG
GATTTTGTGTTTTCTCTGGTATTACTGTCTCGGTGTTTATTAGATATTTT
TTGCATTTTACTTAGTTAAGGGATCGTTTAGAATCTACATACCTAAAAAA
CATTCAAGCTCTTTATACCAATGACACTTGGAGTCAACATGCGGCAGCTA
TCGACAATTTTCAAAGGAATAAACAATGTTGCGGTTACCACGGTATTGAG
GATTGGGACGATTCACATTTCATGAAGGAAAATGGTCATTATCCAATATC
ATGCTGTAAAGAGTTGAATTGTTCCATAGAAGCAGTTAGATCATATAAAA
AGGCGCATTTCTACCAAAAAGTAAAGTTGATTTTGATCCTCACTACCTTT
AGATTTTAAAACAATGAACAGCATTTTTACTATCCAGATATTTGATGTGT
AAATCTCAAAAGGAAGTTTTCTTTTGATTACTGTCTTTGTCATGCCTTCT
CACTCCATCAATTTTCATATTTTTTGCTTTAGGGGTGCTTTAAAGAAGTG
GTTAAATGGTTGACTAGGAATATGGAGATTATTGGTATCGTCAATTTAAC
CTTTGGCATTCTTCAGGTAACATCCATTAGATTCAATTTCCAAAAAGGTT
TGAAAACTAAGACTTCCATTTCAGTGTCCTGAAAATATTTGGTTTTCTTG
ATGATTGATTATTTTGCTGGATTTTTCTACTGATATTTTAGCAAAACCTG
TTTTTCACGCTAAGGCTAAAATGACAAAGAGGTGAAAAGTAAACACATAC
ATTTGGCAGATTTTGTGGGGTTAAGTTGAAGCCACAAAGTTGAATATCGA
CCAAATTTTTAAAATCTAATACCAGATTCTCTCTGCCATTTGTTCTTTGA
AATCATGAGTTATATTCAGGTTATATTTTAGTGAAACAGTTCTGTGTATA
TTAAATCCTTGTGGAGAATTACAATAACTTCCTGATAACAATCACATCAT
CTTAGCATCACATTCAGAAATCTCTTGAAGAAATTGATCAATTAACTATT
TTTCTTTTGCTTTCTTAGATATTTGGCATGGTGTTGACAATGATTTTATA
TTGTTTCGTCAAAGATATGCTTGTTATTACTTCCTGAGTGAAGGAGTTTT
TAAACAAACTATTGCTGTTAAACAATTTTTGAGAAGTTGACAAATGTGTA
TCTTGAGGCTTCAATGTTTTGAAAGAGTATAACTTATCACTTAATAATGG
TTTAGCTGATATGTAGGTTCAACCAGTGTTTTTATAACAGTCTGTAAAAT
ATCTAATCCATTTTCATTTGTTTTTACAGATAAAATCAGTAGTAAAAAAT
AAACGTAATAGAAATGTCGAAATCTTGTTCATGTTTGAAGTACCTTCTCT
TCATTTTCAACTTCTTGTTCTTTGTAAGTAAATTGTAATAACCAAATGAG
ACAGATATCTATCCGTATCTTCTTATATTTTCTTGTAATTTTATACTACC
ATGTAGTCAAGGTGTATTCAATACCTTCTTTTGATAAAGGTGGTTGTGCT
TTCTTGTTCTTGTTGAATTATCTGGTTTTTCTTTCCTAACAGTTGATTGG
CTGTGCCATCCTTGGACTTGGAATATGGTTGAAAGTTGAGAAAGGTGATT
ACGTAGACATCTCCCAATATGATTACCTGTCAGCAGCAAATGTGGCAATC
GCTATTGGTTCTGTTATTCTGGTCGTTTCATTTCTTGGATGTTGTGGCTC
CATCAAAGAAATTGCTCCTATGTTGATCGCAGTAGGTTCAAATTCCCACT
TAGTGATATTTTGCTGTCTTTTTTATTTTACATTAATGATGATGAAATAT
TTATTAGTCATTTATTTTTCTGCTTTTTACTGTCCCATTATTCATCAGAT
ATTACACACAAGTATCTTTTTGACAATTTATTCTCTCTTTTACGACTAGA
AATACTAATGTTGTTAAACAGCATTACATGGAAATCGTTGTTCTCATTGT
TAACAATTGCAGGCATATGATCAACGACTAGAGGCAACCCAATTAAGTCA
TCTTCAAATCTTTGCAACCTTCAATTGAAAGAAAGAATGAAACACTCCCG
ATTCATAAAGCTTTACTTTTATTTAGTTCTTTGTGTTACTGGTGATCATA
TTTTTGCTGGAAATTGCTATCGGTATTTTCGCTTATGTCCAGAAAGACGA
TGTAAGTAAAGACTATTACTGTTTGACTGTCTTTGAACTGTTCTTGTTGT
ACGACTTCAATCCTTCATAATGGGCTCTTCCAGGAAAAATCGGGTAAGGG
GGTGGAGGATAAGTTGTCCAGGGGTCCGAAAAAATGTTCTAAAAATTGCT
TTGTCCAGGGGGTAAATCTGCGATGCTAGTAAATTTTTATGTCCAGGAGA
TTAAATTGATGATTGTTCATGGGTATAATCCATGTCCATGGGTTTAAAAA
TGAAAATGCCCAGGGGTAATTCCCACCCCCAATGAACGGATTTTTTCTGG
AAGACCTCATATTTATGTTGATTCACAATACCACAAACTACCTAGTGAAT
ATGTCTTCTAAAGTTAATTCTTTTGCCCTGATTATTTGGAATTAGTTTGC
AACTAGGACATTCTCATTCCAACCCCATCGTTTATAGATTTGGTTTGATT
TGATTTCGTTTGATAGATTACTTATTCCAATCCTCCTGCGTTTTCAAAAG
TTTTACAATCTGGAAATCTTGCTGAAAATCTGGATTCAAAGTGTACTGTG
TTTGGACAAAGACATAACAGTAGCTATATAAACATTAACTTGATTTCATT
TTTTAGTTGGAAACAGAACTGCAGAAGGATTTGACTCAAGCAATGCTGAA
TAAATATGGTGAATCTGGTGAAGGTGGTTTGACTAAGGCTGTAGATGATT
TTCAAAGAGATTTTCATTGTTGTGGCATTGATATATATACTGATTGGAGG
GGTTCTAAATACTATCAAAAGTTTGGTAAATTTCCGCAAACTTGTTGTAC
AGATGGACTAACAAAGGCATGTCCCACTGAGGTTGTTGCTGAATGGCATC
GTGTTTACAAGCCTGAAGTAAGTGTTTTTAATGGGATAGTTTTACTCTAC
TTCCTGTTAGCATAGCTTTAGATTTTTTTTCTTTTAAAAATAATTACTAT
CTTATTGAAACTTAACCTATTGCAAATTGGTTCAGACTTTTGCATTTCAT
TTAATATTCAACATTTTATTATTTTTGTAGGGATGTTACATCAAGCTGAA
AGATTTCTTGAAAGATAATTTCCTTTATATTGGAGTCACTGCAATCGTCT
TTGCAATATTCCAGGTAAAAGAAAAAATGCTGAGTTTGTCAATAGTTTGA
AATTTGTTCATCATTTTGTGAAGCAATTTTTGTAGAAAAAAAGCATCATG
ATATAAAGTTATTTTTAAAGTTCTTTAAGATTTCTCTTGATGTACTTAAA
ATTTGATTCCAGATAATACATCAGTAAATACCATTCAATAAAGCTTCATA
GATTGACTTCAGATTCCGCAATTTTTTTCTTTATAGGTACTGGGAATGAT
ATTTTCAATGATTCTTTACCGAAGCATTCGATGAGGAAAATAATGGAGAG
AGAAAATTGTCTGTATTGCATTGTTCTGGAAACAGATGACGATGGTATTG
GAAGGATAGTGATTGTATCTTGCTGCTCCTGGTGAGGCATGCAGACTCCA
GGCTATTGGTGGTCATATGTTTGGTTGACTATGTTAAGATGGAGATATTG
TATTGGCCAGAAAGTTTAACATATTAAATGCTGGTTTGATTTGAATTACT
ATTGTGGATTGGAAAGTTTTTGAATTCAAAGTGAATAAAAATGAACTATC
AAAAACTGTTAAAAAAATGTTTTGGGTGTTGGAAGTGAAAATTTATTGAG
AAAATAATACAATCTACTTCACTATTTCATTGGTTTTTAATTGTTTTTAG
TTTTCATATATATTTTTTTAATTTTGATTTATTAAACTTATTTAGATTCA
TACCATGTCACTATCAAAATGTGTAAAAGTATCTATTATTGATTTTTGTC
TTTAAATACTTGTGCTGTTTTCATAAAATATGAACTAATCTTTTATATAT
TTTTTATTTCCACTTATCTTTAAGTCGGCTACTGTAAATATCATTTTTCT
GCTTTTTATCAAAAATTCTGTTTATTTTTATTAAGGTAATATTTATTACA
TTTGATTATATAATTCAAAAGTATCAAAAGATTTTCCACCTTTCTTCAAT
TTTGTTTATAATGTAGATTTTAACTTCGATTTTAAGCTTCCTTTATTATT
TGGGATGACACTTCATGGTGCTACAATAATTCCTGGATCCTCCTTTCTGT
ACCTAAACCTTTTCACTGGAATTTTATAATGTATATTTAATGAGATGATT
ACTTGATATATTTTTTGGTCACGATTTGTTCTTATCGCAATCGTTTAGCC
TTACATTGTTTTTCACTTCATATTTGTCGAAGGTTCAAACAGCTGAACAT
AAATAAGTATGCAATCAGCTAGCTATTGTAAATCCC

Coding sequence (CDS) from alignment at sc0000006_pilon:1615560..1621445-

>MSTRG.1309.2.p2 ID=MSTRG.1309.2.p2|Name=MSTRG.1309.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3450bp|location=Sequence derived from alignment at sc0000006_pilon:1615560..1621445- (Clytia hemisphaerica_ch_hm2_pilon)
ATATTTGGCATGGTGTTGACAATGATTTTATATTGTTTCGTCAAAGATAT
GCTTGTTATTACTTCCTGAGGGTGCTTTAAAGAAGTGGTTAAATGGTTGA
CTAGGAATATGGAGATTATTGGTATCGTCAATTTAACCTTTGGCATTCTT
CAGTTAAGGGATCGTTTAGAATCTACATACCTAAAAAACATTCAAGCTCT
TTATACCAATGACACTTGGAGTCAACATGCGGCAGCTATCGACAATTTTC
AAAGGAATAAACAATGTTGCGGTTACCACGGTATTGAGGATTGGGACGAT
TCACATTTCATGAAGGAAAATGGTCATTATCCAATATCATGCTGTAAAGA
GTTGAATTGTTCCATAGAAGCAGTTAGATCATATAAAAAGGCGCATTTCT
ACCAAAAATTACTTGGATCAGCACTGTTAGTACTAGCCATGGAAAGTAGA
TTTGGAAAGCAAGATTATATCACAGTCACTGAAAAAGTCAGTTATATCAC
TGGATACATGGCAGCAAACACCTTCTGTATTATCATTGGTGTGATCATGG
TGATTGTTAGTTTCTTTGGATGTTGTGGTGTCATTGCAGAACATTCAATA
ATGGTTCTTGTTATGAAAATGGCTCAAAATCTTTCAAAGAAAATCAAGAT
TACCAAATTCCTACTTTTATCTTACATCATTTTATTCTTTATATTTGGCA
TGGTGTTGACAATGATTTTATATTGTTTCGTCAAAGATATGCTTGTTATT
ACTTCCTGAGGGTGCTTTAAAGAAGTGGTTAAATGGTTGACTAGGAATAT
GGAGATTATTGGTATCGTCAATTTAACCTTTGGCATTCTTCAGTTAAGGG
ATCGTTTAGAATCTACATACCTAAAAAACATTCAAGCTCTTTATACCAAT
GACACTTGGAGTCAACATGCGGCAGCTATCGACAATTTTCAAAGGAATAA
ACAATGTTGCGGTTACCACGGTATTGAGGATTGGGACGATTCACATTTCA
TGAAGGAAAATGGTCATTATCCAATATCATGCTGTAAAGAGTTGAATTGT
TCCATAGAAGCAGTTAGATCATATAAAAAGGCGCATTTCTACCAAAAATT
ACTTGGATCAGCACTGTTAGTACTAGCCATGGAAAGTAGATTTGGAAAGC
AAGATTATATCACAGTCACTGAAAAAGTCAGTTATATCACTGGATACATG
GCAGCAAACACCTTCTGTATTATCATTGGTGTGATCATGGTGATTGTTAG
TTTCTTTGGATGTTGTGGTGTCATTGCAGAACATTCAATAATGGTTCTTG
TTATGAAAATGGCTCAAAATCTTTCAAAGAAAATCAAGATTACCAAATTC
CTACTTTTATCTTACATCATTTTATTCTTTATATTTGGCATGGTGTTGAC
AATGATTTTATATTGTTTCGTCAAAGATATGCTTGTTATTACTTCCTGAG
GGTGCTTTAAAGAAGTGGTTAAATGGTTGACTAGGAATATGGAGATTATT
GGTATCGTCAATTTAACCTTTGGCATTCTTCAGTTAAGGGATCGTTTAGA
ATCTACATACCTAAAAAACATTCAAGCTCTTTATACCAATGACACTTGGA
GTCAACATGCGGCAGCTATCGACAATTTTCAAAGGAATAAACAATGTTGC
GGTTACCACGGTATTGAGGATTGGGACGATTCACATTTCATGAAGGAAAA
TGGTCATTATCCAATATCATGCTGTAAAGAGTTGAATTGTTCCATAGAAG
CAGTTAGATCATATAAAAAGGCGCATTTCTACCAAAAATTACTTGGATCA
GCACTGTTAGTACTAGCCATGGAAAGTAGATTTGGAAAGCAAGATTATAT
CACAGTCACTGAAAAAGTCAGTTATATCACTGGATACATGGCAGCAAACA
CCTTCTGTATTATCATTGGTGTGATCATGGTGATTGTTAGTTTCTTTGGA
TGTTGTGGTGTCATTGCAGAACATTCAATAATGGTTCTTGTTATGAAAAT
GGCTCAAAATCTTTCAAAGAAAATCAAGATTACCAAATTCCTACTTTTAT
CTTACATCATTTTATTCTTTATATTTGGCATGGTGTTGACAATGATTTTA
TATTGTTTCGTCAAAGATATGCTTGTTATTACTTCCTGAGGGTGCTTTAA
AGAAGTGGTTAAATGGTTGACTAGGAATATGGAGATTATTGGTATCGTCA
ATTTAACCTTTGGCATTCTTCAGTTAAGGGATCGTTTAGAATCTACATAC
CTAAAAAACATTCAAGCTCTTTATACCAATGACACTTGGAGTCAACATGC
GGCAGCTATCGACAATTTTCAAAGGAATAAACAATGTTGCGGTTACCACG
GTATTGAGGATTGGGACGATTCACATTTCATGAAGGAAAATGGTCATTAT
CCAATATCATGCTGTAAAGAGTTGAATTGTTCCATAGAAGCAGTTAGATC
ATATAAAAAGGCGCATTTCTACCAAAAATTACTTGGATCAGCACTGTTAG
TACTAGCCATGGAAAGTAGATTTGGAAAGCAAGATTATATCACAGTCACT
GAAAAAGTCAGTTATATCACTGGATACATGGCAGCAAACACCTTCTGTAT
TATCATTGGTGTGATCATGGTGATTGTTAGTTTCTTTGGATGTTGTGGTG
TCATTGCAGAACATTCAATAATGGTTCTTGTTATGAAAATGGCTCAAAAT
CTTTCAAAGAAAATCAAGATTACCAAATTCCTACTTTTATCTTACATCAT
TTTATTCTTTATATTTGGCATGGTGTTGACAATGATTTTATATTGTTTCG
TCAAAGATATGCTTGTTATTACTTCCTGAGGGTGCTTTAAAGAAGTGGTT
AAATGGTTGACTAGGAATATGGAGATTATTGGTATCGTCAATTTAACCTT
TGGCATTCTTCAGTTAAGGGATCGTTTAGAATCTACATACCTAAAAAACA
TTCAAGCTCTTTATACCAATGACACTTGGAGTCAACATGCGGCAGCTATC
GACAATTTTCAAAGGAATAAACAATGTTGCGGTTACCACGGTATTGAGGA
TTGGGACGATTCACATTTCATGAAGGAAAATGGTCATTATCCAATATCAT
GCTGTAAAGAGTTGAATTGTTCCATAGAAGCAGTTAGATCATATAAAAAG
GCGCATTTCTACCAAAAATTACTTGGATCAGCACTGTTAGTACTAGCCAT
GGAAAGTAGATTTGGAAAGCAAGATTATATCACAGTCACTGAAAAAGTCA
GTTATATCACTGGATACATGGCAGCAAACACCTTCTGTATTATCATTGGT
GTGATCATGGTGATTGTTAGTTTCTTTGGATGTTGTGGTGTCATTGCAGA
ACATTCAATAATGGTTCTTGTTATGAAAATGGCTCAAAATCTTTCAAAGA
AAATCAAGATTACCAAATTCCTACTTTTATCTTACATCATTTTATTCTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1309MSTRG.1309Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1309.2.p2.exon10MSTRG.1309.2.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon9MSTRG.1309.2.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon8MSTRG.1309.2.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon7MSTRG.1309.2.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon6MSTRG.1309.2.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon5MSTRG.1309.2.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon4MSTRG.1309.2.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon3MSTRG.1309.2.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon2MSTRG.1309.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1309.2.p2.exon1MSTRG.1309.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1309.2.p2MSTRG.1309.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1615560..1621445 -