MSTRG.13075.1.p1 (mRNA) -

Overview
NameMSTRG.13075.1.p1
Unique NameMSTRG.13075.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000102_pilon:112922..118331-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13075.1.p1 ID=MSTRG.13075.1.p1|Name=MSTRG.13075.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5410bp|location=Sequence derived from alignment at sc0000102_pilon:112922..118331- (Clytia hemisphaerica_ch_hm2_pilon)
CTTTAAAAATGGGGCATTAATTTCAAAACAAACCTTGCGAAATTGCTCTT
TTTCTTCGACGTGCATGCTGTCGTTGCTGTTTTGATTCAAGACTCTTGGG
TAATTTTTATCAAAACACTATGGCTGGGACAGCTTGTGTCATTGGGGCTG
GAATGTCTGGTCTAGCAGCCACAAAATGTTTGATTGATGCTGGATTAGAG
GTGACTTGTTATGAGCGAGACCGATTTGTGGGAGGAAGATGGAATAATGA
GAACACAAACCCTATCCCAAGATCAACTGTCACAAACCTACCAAGTTACA
TGTCATGTTTTTCAGACTTTCCAATGAAAAAGGGAACACCACTTTATTTC
TCTGCAAATATCTATGCTGAGTATTTTCAAGATTATGCTGAAAACTTTTG
TCTTTTGCCTCATATAAATTTTGAGCACAAGGTTTTGAAAGTTGAGTTTA
TGAATTGCCCTAAGAATGGATGGAAAGTGAAGTTTAAGAATAATGAAGGA
GATGAAAATACGAAATTATTTGATTTTATGGTGATTTCTTCAGGATTTTA
TGTTCTTCCGTACATACCAGAAAAGATAGCTTCAGCTATAAAAGGATTCA
CTGGGAACATCGTCCATAGTAAAGATTTCAAAGATGCAGAAGGTTTTAGG
GATAAAAACGTTGTTGTTTCTGGTTTAGGAAATACAGGAGGTAAGATGAC
AAATCTTTATCAATTTGATTTATTAGTTTTTTCAGTCTAAATCTATAATA
ATCCCCCCTGAACACGATATCACGCAATTTTTTGTCTTCAATCACGATCA
CGCAAATCAGCCAAAAAAAATGAACAATCACGCATCCCCAAATCGCGTAT
CACGGCTCAAAAATCTTTCAAATCACGATCATATTTTGACCTCTCATCAC
GCAATCACGAAGAAAATATTTCCAGATCATGTGATCACGCTGCAAAAAAG
TCCCTACACGTCATTACGAAAACCGCTTGGAGGCCTCTATAATTAACGTC
ATTTAAAAAAAGTAAGATAAGATTCATATTTGAATGGCTTAAATTAAACT
ACATATGGTATACCTATGTACTATTCTTATTCAAGGGGACTCAGATTACC
AAAAACTTTCAATCCCAGTTTCATTTTTCAATACATAGAACCATAGAACA
AAATCATGCAGTTTTTGTCTAAATCTTCTGTTTTTTGTATGAAAAATTAA
AAGTCTACAGGTTTAATAATTTTTGACGATGACAGGTCTGCTACCGATTC
CATTTTCAGTAGCGTAGACAGGAAGGGCGCAAAATTAGTGTAGGAGAGAG
ACTTTTATGACACGGTAATTATCTATTCATGACATAAAAAGATAATTTCT
GTGTCATAAAAATCTGCTCTCCTACACCAATTTTGCGCCCCCCTCCTTGT
CTATGCTACTGATTTTCATTTTTGTCTTTTACGGGCCAAATTCTTTTTTA
ACCTTCTCAAATTGTGCCTCAAAATTTTTGACCTCAACCAAATTCTTTCT
TTGAGCCCTCGCGGTACACTTTCAAAGGACTGAAAGATCAACTCACAGCA
TATATGTCACTTTTACCTTTTAAACATAATGCTTAAGGGAGTTTGAAGGG
GTCTACAATAGAAATACTGGAAATTTCTTTCTCATCAACCGAATTGGCAT
TATTATACATTTTCATTCATTGGAATTATTTGTATTATAGGTGATATTTC
AGTGGAGAGCTCTAAATTCTCTAAGAGTACTTGTTTATCAACTTCTCGAG
GGAGTTACATAATCAGTCGAATCATAAATAATGGTACTATACCAATATCG
GCATCATTGAACAGACTTTCTGCATATACTCCATCATGGTTGATGAAATT
GATTAAAGAAAATATTATACAGAAATGGTCAAATCACGCTGGTGATATGG
AGCGATGGAATTTGAAACCTAAAAATACGCTTAGTGTTATAATTAACGAC
GAGCTTCCATACCGTGTCGCTTTTGGTAAAGTGAAAATCAGGAAAGAAAT
CATTAAAACTGAAGGAAGGTCTGTTTATTTCAATGATGGTCAAGTTCAAG
AGGATGTCGATACAATTGTGTTATGTACAGGCTACACACGTGAATACCCA
TTTCTCGACGAAACTATATTGAAGCCTCAACGTAAGGGTAAATTTTTACC
ACTTTATAAAGGCATGTTTCCTGTACAGCATAACGAATGTTTAGCCTTTG
TTGGTATGTTTTCCATCTTTAATTCTGTTGCCATTGGTGTTGAGATGCAG
TCTAGATTCATTGCTGAACGATTCAAGAGGAATATAAAGTTACCAACGGA
GGAAGAAATGGCGAAAGAAATTCAAAGTCATCTTCAAATGTTTGATGATC
AATTCAAAGGAGAAGCTAAAGAGTTAAACTTGGTAAGTCGTTCGAATTTT
TTGTTAATAAACTTATTTTCCTATGATTGACTAACTCCCCATATTACACC
CCTATTTCATGGGAAAAAAAGGTACCCTTAAAGGAAGAAATTTTGGCGGG
AAGAAAATTTGGCGGATTTGGCGGATTTGGTCAAAATCCGCCAAATTAAG
TTCCCGCCAAATTTAATTTTTTTCGTCATCCGCCAAATTAAATTCCCGCC
AAATTTAAGTTGCTCTATTTATCCCCCCAAATTTGTGCTCTTTCAGGCTT
TAAAACAGATATTTCCTTTTTAAATGGTGTTTTTTTGGACAAAAATGTCC
TTCGTCCGCCAAATTAAATTCCCGCCAAATTTAAATTTTCAAGTTGACCG
CCAAATTAAATTCCCTCTGAAAAAACTTTTTCGGCAATCCGCCAAATTAA
ATTCCCGCCAAAATTTCTTCCTTTAAGGTATTGTTTTTATGATATAGAAA
TGAGATGCGCCTCTATGCTGACAGAGTAGAATAAACAAAAGAATTTCTCA
AAAACTTTTCATTAGATGGACGGAATTATCTCGGTGTAATGATGTATGGT
CGAAAATGTCAGGAGAGAGAAAAACTTGTCCTTTTTGCTTAAAAAATACT
GTGTAGGCAAATGTAAACGAATGTTCTTTAGCTTTGAACAATAAAGTAGC
AGAGTGGCATATCAATGCTTGATCAATCAACATTTTTTTTCGAACAAAAG
GTTTACATAATTAGATAAAGTGAATAAATAGAATCACAAAGTTCTCAAGA
AAATATCAAAAATCAAAAAACTAACTTGCAATTACAACATAATTAAATAT
CACTCAATCCTTCCTATGTCTCTTTTCAGATAATGGATCCTTGGGCTTAC
TATAACGAGCTTGCTGATCAGATAGGATGTCGCCCTTCCATACTGCAGAT
TATGTTCTCTGATCCTATATTGTTTTGGCATTTATGGTCAAGATATAGTT
TTCATGAATTTCGTTTATATGGCCCAAACAAATGGAATGGTGCCAGAGAT
GCTATTATTAACTCTGATGAACTGAGATATAGCTTTTTTAAGCCTTCATA
ACACAAGGGGTTCTAAATCAGCGTTTCATTATTTTTTAAGCTTACGGTAT
TTCTTTAACCCATTTAATTTTTTGTTATTTTTTAGCTTTGTTTTTCATTG
TGTTTGTGAGATATTAACTATATAATATAAGTCACATTAATATTTTGCAA
TTGACTAGAGTGTAATTGAAGTTATATCAAATCTCAGGTTCAATCGAATT
GAGGCTCTATAAAATCTTTATTCTTACAAGCTTCTGATTGCGCGGAAAGG
AATTAGACTTATGAGCTATTAACACACCCCTGTCTCAATGAACCCGTGAA
ATTTTCAACACCACCCAGTTACTACTATGGAAAAAAGTGTTTTTTTATCG
GGTTTGAATTTAATATCTATGAAACATGAAACTCATCGGAGTGTCAGAAC
TTTCAACTCAATTTTCACTGGAGTAAAATTCACTTTCATATATTAGTGAG
TCTGGTTTTACTAGAATTCGTTAAAATGCTATTTTTCTCCGATCGGGTGA
ATCTGACCGGGACACTGGTACAGGGCTGTATTTACTCTAATTTAGCTAAA
GCTCGCATTTTCAATAAAGGGAATTATAGTAATATAAACTTAAATTTCTT
TGTATTTTATAACAGATTATATTTTCAAAGATGAATTCTTTACAAACGAG
AATATAGAATAAAGTTGAAATTACATTTATTCGTTGGGAAATCTTACTAA
ATAAATTACGAAATATTGGCTTTAACAAGTGACAAATGCGAGCTCAGCTC
AAATTTAACGCCGTGGTAGAAAACTCTAGCATTGCTAATTAATTTGAGAA
CTCGAGCATGCATACTAGACATTGATTCGGATTAACTTAATTAAAAAAAA
AACACTCTGAGGCTTCAAAAATAGTTGTGCGAAAAAAGGTCGAATTACTA
AAAAAAGTTAATATACAAAGTATAGCGGCAACCTAGCAAAGTTCGAGTTT
ATTATCTGTCTTTTGGAAATGACAAGCAATTTAGAGTTATTAAAGAATAT
GAACTTTACCATTTGGAACATACATCCAACAGAAAAAATCGTATTCTACC
ACGACATCATCTGGCCAAATTTTGGTCTTCCCCTGATCATCATATTGAAA
CATCTTGCCCTGGTTGACTGTCCAACATGCACTTCGAGGATCACTGATTG
GAGCACCAGCAAAATCAAAATCAGTCACCTGGTCACCTCCATCTTTTTGC
GACCAACTGTTGGTTCCATAGTTATCACATCTGATCCAGTGATAATCCCC
TGGCCATCCTCCATTCTCTCCATCTGGCAGTGTGAACAATTTAGGCTTAG
ATATCAACAGCGCAACAAAATGACCTTTATGGGGTGCATAATCAGGCACA
TGTTGCCATAATACGTTCGGTGAAAGCTCTTTGCCACCAACATAAATGAG
ACCATCTGCGATTGCACCTTTCTTGACATTTTCTCTTGTGGGATGGTCAA
ATCGTATACCATGTGCTCTTCCTGGTTGAGCAAAGCTGTTAGATGCGATG
TTGGTAGAATAAGCATAGCAGTTGTTGTCCGGTTGAAACTTTGCAGACAT
GAAGTTACCATCACAATTATGTTCGGGATCATATTTGGTCGCTACCCCAC
GAACAGTTGCTGCATACTGAGCTACATGGTACACTCCATTTGCACCCGAC
ACTTTCACATAGTGAGGAGGTATAACATGATCACCGTCTTGCTCAGATTC
AATGATTGGCTTATATATCTCGTGTTCTTGCGGTGCGAGACCTTTGAATT
TGAATGGTTTGATTTGCTTATTCTTGTTGGCTTTGTTTTCTTCGCTCATC
TTTGCTCCCTTGTGTCCTTGTTGTTTTCTCTTCTTGCTCTCCTTCTGTTG
GTTTGTCAGTGTTGGATGAGGTTAAGTGATTTCATCCAGCCTTTTTATGC
ATCGTTGAGAACAAAAGATTTGTTGTGGATATGCACAATTACCTTATTTG
GCGAAGTTTC

Coding sequence (CDS) from alignment at sc0000102_pilon:112922..118331-

>MSTRG.13075.1.p1 ID=MSTRG.13075.1.p1|Name=MSTRG.13075.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4455bp|location=Sequence derived from alignment at sc0000102_pilon:112922..118331- (Clytia hemisphaerica_ch_hm2_pilon)
ATAATGGATCCTTGGGCTTACTATAACGAGCTTGCTGATCAGATAGGATG
TCGCCCTTCCATACTGCAGATTATGTTCTCTGATCCTATATTGTTTTGGC
ATTTATGGTCAAGATATAGTTTTCATGAATTTCGTTTATATGGCCCAAAC
AAATGGAATGGTGCCAGAGATGCTATTATTAACTCTGATGAACTGAGATA
TAGCTTTTTTAAGCCTTCATAAGTGATATTTCAGTGGAGAGCTCTAAATT
CTCTAAGAGTACTTGTTTATCAACTTCTCGAGGGAGTTACATAATCAGTC
GAATCATAAATAATGGTACTATACCAATATCGGCATCATTGAACAGACTT
TCTGCATATACTCCATCATGGTTGATGAAATTGATTAAAGAAAATATTAT
ACAGAAATGGTCAAATCACGCTGGTGATATGGAGCGATGGAATTTGAAAC
CTAAAAATACGCTTAGTGTTATAATTAACGACGAGCTTCCATACCGTGTC
GCTTTTGGTAAAGTGAAAATCAGGAAAGAAATCATTAAAACTGAAGGAAG
GTCTGTTTATTTCAATGATGGTCAAGTTCAAGAGGATGTCGATACAATTG
TGTTATGTACAGGCTACACACGTGAATACCCATTTCTCGACGAAACTATA
TTGAAGCCTCAACGTAAGGGTAAATTTTTACCACTTTATAAAGGCATGTT
TCCTGTACAGCATAACGAATGTTTAGCCTTTGTTGGTATGTTTTCCATCT
TTAATTCTGTTGCCATTGGTGTTGAGATGCAGTCTAGATTCATTGCTGAA
CGATTCAAGAGGAATATAAAGTTACCAACGGAGGAAGAAATGGCGAAAGA
AATTCAAAGTCATCTTCAAATGTTTGATGATCAATTCAAAGGAGAAGCTA
AAGAGTTAAACTTGATGGCTGGGACAGCTTGTGTCATTGGGGCTGGAATG
TCTGGTCTAGCAGCCACAAAATGTTTGATTGATGCTGGATTAGAGGTGAC
TTGTTATGAGCGAGACCGATTTGTGGGAGGAAGATGGAATAATGAGAACA
CAAACCCTATCCCAAGATCAACTGTCACAAACCTACCAAGTTACATGTCA
TGTTTTTCAGACTTTCCAATGAAAAAGGGAACACCACTTTATTTCTCTGC
AAATATCTATGCTGAGTATTTTCAAGATTATGCTGAAAACTTTTGTCTTT
TGCCTCATATAAATTTTGAGCACAAGGTTTTGAAAGTTGAGTTTATGAAT
TGCCCTAAGAATGGATGGAAAGTGAAGTTTAAGAATAATGAAGGAGATGA
AAATACGAAATTATTTGATTTTATGGTGATTTCTTCAGGATTTTATGTTC
TTCCGTACATACCAGAAAAGATAGCTTCAGCTATAAAAGGATTCACTGGG
AACATCGTCCATAGTAAAGATTTCAAAGATGCAGAAGGTTTTAGGGATAA
AAACGTTGTTGTTTCTGGTTTAGGAAATACAGGAGATAATGGATCCTTGG
GCTTACTATAACGAGCTTGCTGATCAGATAGGATGTCGCCCTTCCATACT
GCAGATTATGTTCTCTGATCCTATATTGTTTTGGCATTTATGGTCAAGAT
ATAGTTTTCATGAATTTCGTTTATATGGCCCAAACAAATGGAATGGTGCC
AGAGATGCTATTATTAACTCTGATGAACTGAGATATAGCTTTTTTAAGCC
TTCATAAGTGATATTTCAGTGGAGAGCTCTAAATTCTCTAAGAGTACTTG
TTTATCAACTTCTCGAGGGAGTTACATAATCAGTCGAATCATAAATAATG
GTACTATACCAATATCGGCATCATTGAACAGACTTTCTGCATATACTCCA
TCATGGTTGATGAAATTGATTAAAGAAAATATTATACAGAAATGGTCAAA
TCACGCTGGTGATATGGAGCGATGGAATTTGAAACCTAAAAATACGCTTA
GTGTTATAATTAACGACGAGCTTCCATACCGTGTCGCTTTTGGTAAAGTG
AAAATCAGGAAAGAAATCATTAAAACTGAAGGAAGGTCTGTTTATTTCAA
TGATGGTCAAGTTCAAGAGGATGTCGATACAATTGTGTTATGTACAGGCT
ACACACGTGAATACCCATTTCTCGACGAAACTATATTGAAGCCTCAACGT
AAGGGTAAATTTTTACCACTTTATAAAGGCATGTTTCCTGTACAGCATAA
CGAATGTTTAGCCTTTGTTGGTATGTTTTCCATCTTTAATTCTGTTGCCA
TTGGTGTTGAGATGCAGTCTAGATTCATTGCTGAACGATTCAAGAGGAAT
ATAAAGTTACCAACGGAGGAAGAAATGGCGAAAGAAATTCAAAGTCATCT
TCAAATGTTTGATGATCAATTCAAAGGAGAAGCTAAAGAGTTAAACTTGA
TGGCTGGGACAGCTTGTGTCATTGGGGCTGGAATGTCTGGTCTAGCAGCC
ACAAAATGTTTGATTGATGCTGGATTAGAGGTGACTTGTTATGAGCGAGA
CCGATTTGTGGGAGGAAGATGGAATAATGAGAACACAAACCCTATCCCAA
GATCAACTGTCACAAACCTACCAAGTTACATGTCATGTTTTTCAGACTTT
CCAATGAAAAAGGGAACACCACTTTATTTCTCTGCAAATATCTATGCTGA
GTATTTTCAAGATTATGCTGAAAACTTTTGTCTTTTGCCTCATATAAATT
TTGAGCACAAGGTTTTGAAAGTTGAGTTTATGAATTGCCCTAAGAATGGA
TGGAAAGTGAAGTTTAAGAATAATGAAGGAGATGAAAATACGAAATTATT
TGATTTTATGGTGATTTCTTCAGGATTTTATGTTCTTCCGTACATACCAG
AAAAGATAGCTTCAGCTATAAAAGGATTCACTGGGAACATCGTCCATAGT
AAAGATTTCAAAGATGCAGAAGGTTTTAGGGATAAAAACGTTGTTGTTTC
TGGTTTAGGAAATACAGGAGATAATGGATCCTTGGGCTTACTATAACGAG
CTTGCTGATCAGATAGGATGTCGCCCTTCCATACTGCAGATTATGTTCTC
TGATCCTATATTGTTTTGGCATTTATGGTCAAGATATAGTTTTCATGAAT
TTCGTTTATATGGCCCAAACAAATGGAATGGTGCCAGAGATGCTATTATT
AACTCTGATGAACTGAGATATAGCTTTTTTAAGCCTTCATAAGTGATATT
TCAGTGGAGAGCTCTAAATTCTCTAAGAGTACTTGTTTATCAACTTCTCG
AGGGAGTTACATAATCAGTCGAATCATAAATAATGGTACTATACCAATAT
CGGCATCATTGAACAGACTTTCTGCATATACTCCATCATGGTTGATGAAA
TTGATTAAAGAAAATATTATACAGAAATGGTCAAATCACGCTGGTGATAT
GGAGCGATGGAATTTGAAACCTAAAAATACGCTTAGTGTTATAATTAACG
ACGAGCTTCCATACCGTGTCGCTTTTGGTAAAGTGAAAATCAGGAAAGAA
ATCATTAAAACTGAAGGAAGGTCTGTTTATTTCAATGATGGTCAAGTTCA
AGAGGATGTCGATACAATTGTGTTATGTACAGGCTACACACGTGAATACC
CATTTCTCGACGAAACTATATTGAAGCCTCAACGTAAGGGTAAATTTTTA
CCACTTTATAAAGGCATGTTTCCTGTACAGCATAACGAATGTTTAGCCTT
TGTTGGTATGTTTTCCATCTTTAATTCTGTTGCCATTGGTGTTGAGATGC
AGTCTAGATTCATTGCTGAACGATTCAAGAGGAATATAAAGTTACCAACG
GAGGAAGAAATGGCGAAAGAAATTCAAAGTCATCTTCAAATGTTTGATGA
TCAATTCAAAGGAGAAGCTAAAGAGTTAAACTTGATGGCTGGGACAGCTT
GTGTCATTGGGGCTGGAATGTCTGGTCTAGCAGCCACAAAATGTTTGATT
GATGCTGGATTAGAGGTGACTTGTTATGAGCGAGACCGATTTGTGGGAGG
AAGATGGAATAATGAGAACACAAACCCTATCCCAAGATCAACTGTCACAA
ACCTACCAAGTTACATGTCATGTTTTTCAGACTTTCCAATGAAAAAGGGA
ACACCACTTTATTTCTCTGCAAATATCTATGCTGAGTATTTTCAAGATTA
TGCTGAAAACTTTTGTCTTTTGCCTCATATAAATTTTGAGCACAAGGTTT
TGAAAGTTGAGTTTATGAATTGCCCTAAGAATGGATGGAAAGTGAAGTTT
AAGAATAATGAAGGAGATGAAAATACGAAATTATTTGATTTTATGGTGAT
TTCTTCAGGATTTTATGTTCTTCCGTACATACCAGAAAAGATAGCTTCAG
CTATAAAAGGATTCACTGGGAACATCGTCCATAGTAAAGATTTCAAAGAT
GCAGAAGGTTTTAGGGATAAAAACGTTGTTGTTTCTGGTTTAGGAAATAC
AGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13075MSTRG.13075Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13075.1.p1MSTRG.13075.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13075.1.p1.exon3MSTRG.13075.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13075.1.p1.exon2MSTRG.13075.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13075.1.p1.exon1MSTRG.13075.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102_pilongenomesc0000102_pilon:112922..118331 -