MSTRG.13069.2.p1 (mRNA) -

Overview
NameMSTRG.13069.2.p1
Unique NameMSTRG.13069.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000102_pilon:27463..31585+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13069.2.p1 ID=MSTRG.13069.2.p1|Name=MSTRG.13069.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4123bp|location=Sequence derived from alignment at sc0000102_pilon:27463..31585+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTCATCCTTAGAGCAAGAAAAGTAAGACAATATTATCCAATGAAgctga
atttagaaaatttaattcaGAAACGACGTTGGGCCGTTATAGCAACATGC
ATAGCTATCAGCTCATTCTTTATCGGATTTGTCTTCGACCGACATTTAAC
TGAAAATGACGGATTTTTGTCGATATTTCGACGTAATTTTGATTATTGTG
ATCGGTCGTGGCATGACGTGAATGAAGAATATTCGACGGCACATGACGCc
gctttgaagaaaattgacgTCCATGAGATTGATAAAGTGTTCAAGtaaga
aaaatatcattttccttTGCGATCATTTATTTGTTACACATGTATGGTCT
TTAAGtataacttaaaatttgattgattgattgattgattgattaatatt
gattgattgattgactgatagacagattgTCGGAGTtactcattcattca
ttcatacatacattcattcatCTCTGTAGATATTTGGTAGAGAAACCACA
TCTTGGAGGATCCATACGAAACAATGAGCTCGGTGATTACATGGCGGACA
AATGGGAATCATATGGAATGAAAGTTTACAAGAAAACATATCAAGTGTTA
TTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAACTCTTTCATTTGAACGG
TAGTGTTGATTATGAACCAGAAATGATTGAGCATGCTTTTTACAAGGAGG
AGAATCACACTGATCGAGTTCCGCCTTTTCATGCTTTTTCTGCTGCTGGA
GATGTTATGGTAAGGCtcgttttcgaaattttttaacCATTCGCATTGTC
AAATCTTTTCGGTTGAAGATTCATCTATAGCCTTCGGTTACAAATATATT
GCTTTGTCGCCCGAAAATTTCAAGCGATTGTTTGAAAGATGGCTGGAAAA
TTATCATTTGATATATTTCTGAACTCTATATGTAAAAATCCCTCTTAGTC
CAGGCAATATGGGGCACTTACCCCCACCTTGCCAGTGACCGAGGTCTTCG
AGTATTTTTGGGTTCCAACATACCTATATTTTGAGAATTAcgatggtttt
caggctgaCTATGGGGCAAGAATGTTGGGTAGGGCCCTAAGTGGGGAGTG
GTAGAGAAAATGGGGAACAACTTTTTGCCTGGGGTAGGTCACTGATTTCc
gttatatttcaaaaagtttgaatgataaagctctaaaattttgcacacag
gTTATGAATATACTAAATAACATTCCTACACTAAACTTTGGGTCATTTGG
ATaaaaattgtgtattttacagaccagaatattcaaaattgtcaaaaaaa
ttgaagTttttccaaaaatccgaacaagttttttttgaCAAACCCACTAA
ACATCGATTGGTagcaaaatgattttttctgaaacctTTACATAAACTAA
GaCatcttggaaatttttttgcttgactataCCAACTTGGAATTTTACAG
ACCTAGGAATTTGGACCAGAATCTCTCCGAAATTCATATTTCAAGTTCTA
CCATATGGGTCTTAGTGTACTTTTTGCTTAATAACTCAAATTTAATGTGA
TTTGGTGCTTATAATTAGAGCAATAGTAATGatttaaaaacattcttaGa
aaatattttgaacagaTTTGATCATAAAACCGTTCGGttttttttACAGG
CAGAACTTATGCATGTCAATTACGGCAATCAAAAAGATTATGAAGATATA
TTTGAACGCAATCTTGATGTTCAAGGCAAAATTGTTATGGCTAAATTGGA
TAAGAATTGGCGTGGTGAAAAGGTTTCAAAAAGCTTTACTCTCAACTATA
AAATAAGGCTCCTTTTACTcttcacaaaatttaatttgtCTTCGATTTTA
CTATGAAGTATGTTAAAAATCTGCATTGTCTTTTCATAGTGAGAAAATTa
gcattcttttttcatttcttccatACAGTAAAATTTATAGGATCACAGAG
TGCtcaagaaaatttaagaaaatttgagGCATTCGAGCGAAATATCGAGA
AATACAGAACTAACTAACAATTATCTGCAATTACTACACAGTATTTCATG
TTGGCGCACTTCAGACAATGCAATGTTTAGTTATTGAATTTGCTGCATTG
CCTGAAGTTTGCGCCAGTTTGCTAAACGGTGTTGGTTAGCGatttttagt
tctttatttaTTCATATTGTCTACATAAACCATTTCTGAACacccttaaa
attttaaatttaggtACGCTTAGCAGAACTATACGGTGCGGTAGGTGTGT
TGTTTTATACGGACCCTCGGGATGGCGGGCGAAATCCAGGAACGAAGGGC
TATCCGGACGACTGGGCACTACCGGAACATGCAATGAGACGTGGAGGTCT
TTTGAATTTGAAAGGAGATCCGTTGACACCTGGATGGCCTTCTACAGGTT
TGACAattattcgtgatattcattacgtaatgttttctacgagTTTTCTC
TAGCTTTAATTTCTCATTTGCCAATTAGACACAAAAAACCGGGTGtttct
gtagaaaacattacgtcatggatatcatgaatagatgCTTTGTTCGCTAC
ATGCGATTGCGAAAATCCTAACGTCTTAGGAATAACATTAAAGGGGGTTT
ACTTTTTTGGGCACTGCAAGTAGAGATGATATTGTTTATCCTGCATCAGT
ATATTTCTAGCCAGTTCATTGGCCAAAAGAAATCACGTTGAGCTAATTGC
TAATATTGACAAGCCTTGtcaccaatacggtttttactgacccAATTTAT
ACTGCACCACCTCGAGAAACTTAAACTATAAAGATGTCTGCATCTATCAG
TTGACCAGCGATCAATGCAGCAAAATTGCTTTCGAttcttttctcaaaac
tttggtTCACTAttagcttgggaaattttctgtttcaaagaaaaactgag
aaaattaatattgtcagctgtaattatcagacaatagaaactttttcaaa
caaacgagaagtaaaaacctttctttttaacaattattttgaatttgttt
taaaattcgacccttgcagtgcaatctcacagaaacacacccttacagtg
cattaaATTTCAACAGATTGTACATACAATGGGAATACACAATGCAAAAT
AATATTCATTGTTCTCTTTTACAGAGGGTATGTTTCGGATGAATGAATCA
TCGATCGAAGGTCTTCCCCAGATCCCTGTTCAGCCAATCAGTGATCACAT
CGCCAAAGAATTATTaaggtgaaaaaaatgaacatttcaaatatAATGAA
ATAAGTACGTAGAATACCAAAGTTCTCAATTGTAGATTTTTATAGAACGt
ttatttcactgaagatttccatcctggatggcatgagactttgagtatga
aattaacttaaatcgCGTTTTCTCTACTCAAACTAGTATAAAGCTCTCTA
GAAAATgttgagaaaaaaacaacaagcgAAATATGGAAATTTTACCGTGT
AGCAATTGTAAGTTTTTTCGCGACGtttttttAAATAGTATTGCTATACT
ATTTTCCTTTTCTGATTGCTTATTGTAACTCCTTTTCAAagttatatttt
catttcagtAAATTTAAAGGAGTTGAAGCACCAAACCATTGGCACACAAG
TTTTACTGATATCACAAACCGCATACAATCACATAGGTATTCCAATTGAT
TTACTGATCACCTATTGGGTAAAGCTGGAATAACAAGAATTTGAAGTACG
TCTATGTTATGGTTCATAAGCATGATAATGTCTATTCAACTGTTCaattt
tttcgaatatttcgaACCCATGCGATATTTTGGGCTTCCGCTAAAAATAT
TTCGCTTACTTCAGCACACGATCGGTTGAACTTGAGAAAATCAGCCGGAG
GTCCCATAAATTTACCATTTACTTATTTTTCAGGTAGGTACAATCAGAAt
aatataaggagcacgaatccattagtggatgccagcagcttATCTATCCT
CTCTTATTTTCGGGGCTATAAGCTGCTCGGTGTCATTCTTATCAAATATT
TCCCAGAGTgcatttcttcctttttttcttttcacaggGTGGTTCGTTTA
CAAGTGAATACTGAGAATGTATTCAAAAACATCACAAATGTATTTGGTGT
GTTGGAGGGAGATACAGAATCAG

Coding sequence (CDS) from alignment at sc0000102_pilon:27463..31585+

>MSTRG.13069.2.p1 ID=MSTRG.13069.2.p1|Name=MSTRG.13069.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5652bp|location=Sequence derived from alignment at sc0000102_pilon:27463..31585+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAgctgaatttagaaaatttaattcaGAAACGACGTTGGGCCGTTAT
AGCAACATGCATAGCTATCAGCTCATTCTTTATCGGATTTGTCTTCGACC
GACATTTAACTGAAAATGACGGATTTTTGTCGATATTTCGACGTAATTTT
GATTATTGTGATCGGTCGTGGCATGACGTGAATGAAGAATATTCGACGGC
ACATGACGCcgctttgaagaaaattgacgTCCATGAGATTGATAAAGTGT
TCAAATATTTGGTAGAGAAACCACATCTTGGAGGATCCATACGAAACAAT
GAGCTCGGTGATTACATGGCGGACAAATGGGAATCATATGGAATGAAAGT
TTACAAGAAAACATATCAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTG
TTCTTCAACTCTTTCATTTGAACGGTAGTGTTGATTATGAACCAGAAATG
ATTGAGCATGCTTTTTACAAGGAGGAGAATCACACTGATCGAGTTCCGCC
TTTTCATGCTTTTTCTGCTGCTGGAGATGTTATGGCAGAACTTATGCATG
TCAATTACGGCAATCAAAAAGATTATGAAGATATATTTGAACGCAATCTT
GATGTTCAAGGCAAAATTGTTATGGCTAAATTGGATAAGAATTGGCGTGG
TGAAAAGgtACGCTTAGCAGAACTATACGGTGCGGTAGGTGTGTTGTTTT
ATACGGACCCTCGGGATGGCGGGCGAAATCCAGGAACGAAGGGCTATCCG
GACGACTGGGCACTACCGGAACATGCAATGAGACGTGGAGGTCTTTTGAA
TTTGAAAGGAGATCCGTTGACACCTGGATGGCCTTCTACAGAGGGTATGT
TTCGGATGAATGAATCATCGATCGAAGGTCTTCCCCAGATCCCTGTTCAG
CCAATCAGTGATCACATCGCCAAAGAATTATTaagGAGTTGAATGAAgct
gaatttagaaaatttaattcaGAAACGACGTTGGGCCGTTATAGCAACAT
GCATAGCTATCAGCTCATTCTTTATCGGATTTGTCTTCGACCGACATTTA
ACTGAAAATGACGGATTTTTGTCGATATTTCGACGTAATTTTGATTATTG
TGATCGGTCGTGGCATGACGTGAATGAAGAATATTCGACGGCACATGACG
CcgctttgaagaaaattgacgTCCATGAGATTGATAAAGTGTTCAAATAT
TTGGTAGAGAAACCACATCTTGGAGGATCCATACGAAACAATGAGCTCGG
TGATTACATGGCGGACAAATGGGAATCATATGGAATGAAAGTTTACAAGA
AAACATATCAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAA
CTCTTTCATTTGAACGGTAGTGTTGATTATGAACCAGAAATGATTGAGCA
TGCTTTTTACAAGGAGGAGAATCACACTGATCGAGTTCCGCCTTTTCATG
CTTTTTCTGCTGCTGGAGATGTTATGGCAGAACTTATGCATGTCAATTAC
GGCAATCAAAAAGATTATGAAGATATATTTGAACGCAATCTTGATGTTCA
AGGCAAAATTGTTATGGCTAAATTGGATAAGAATTGGCGTGGTGAAAAGg
tACGCTTAGCAGAACTATACGGTGCGGTAGGTGTGTTGTTTTATACGGAC
CCTCGGGATGGCGGGCGAAATCCAGGAACGAAGGGCTATCCGGACGACTG
GGCACTACCGGAACATGCAATGAGACGTGGAGGTCTTTTGAATTTGAAAG
GAGATCCGTTGACACCTGGATGGCCTTCTACAGAGGGTATGTTTCGGATG
AATGAATCATCGATCGAAGGTCTTCCCCAGATCCCTGTTCAGCCAATCAG
TGATCACATCGCCAAAGAATTATTaagGAGTTGAATGAAgctgaatttag
aaaatttaattcaGAAACGACGTTGGGCCGTTATAGCAACATGCATAGCT
ATCAGCTCATTCTTTATCGGATTTGTCTTCGACCGACATTTAACTGAAAA
TGACGGATTTTTGTCGATATTTCGACGTAATTTTGATTATTGTGATCGGT
CGTGGCATGACGTGAATGAAGAATATTCGACGGCACATGACGCcgctttg
aagaaaattgacgTCCATGAGATTGATAAAGTGTTCAAATATTTGGTAGA
GAAACCACATCTTGGAGGATCCATACGAAACAATGAGCTCGGTGATTACA
TGGCGGACAAATGGGAATCATATGGAATGAAAGTTTACAAGAAAACATAT
CAAGTGTTATTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAACTCTTTCA
TTTGAACGGTAGTGTTGATTATGAACCAGAAATGATTGAGCATGCTTTTT
ACAAGGAGGAGAATCACACTGATCGAGTTCCGCCTTTTCATGCTTTTTCT
GCTGCTGGAGATGTTATGGCAGAACTTATGCATGTCAATTACGGCAATCA
AAAAGATTATGAAGATATATTTGAACGCAATCTTGATGTTCAAGGCAAAA
TTGTTATGGCTAAATTGGATAAGAATTGGCGTGGTGAAAAGgtACGCTTA
GCAGAACTATACGGTGCGGTAGGTGTGTTGTTTTATACGGACCCTCGGGA
TGGCGGGCGAAATCCAGGAACGAAGGGCTATCCGGACGACTGGGCACTAC
CGGAACATGCAATGAGACGTGGAGGTCTTTTGAATTTGAAAGGAGATCCG
TTGACACCTGGATGGCCTTCTACAGAGGGTATGTTTCGGATGAATGAATC
ATCGATCGAAGGTCTTCCCCAGATCCCTGTTCAGCCAATCAGTGATCACA
TCGCCAAAGAATTATTaagGAGTTGAATGAAgctgaatttagaaaattta
attcaGAAACGACGTTGGGCCGTTATAGCAACATGCATAGCTATCAGCTC
ATTCTTTATCGGATTTGTCTTCGACCGACATTTAACTGAAAATGACGGAT
TTTTGTCGATATTTCGACGTAATTTTGATTATTGTGATCGGTCGTGGCAT
GACGTGAATGAAGAATATTCGACGGCACATGACGCcgctttgaagaaaat
tgacgTCCATGAGATTGATAAAGTGTTCAAATATTTGGTAGAGAAACCAC
ATCTTGGAGGATCCATACGAAACAATGAGCTCGGTGATTACATGGCGGAC
AAATGGGAATCATATGGAATGAAAGTTTACAAGAAAACATATCAAGTGTT
ATTAAGTGTTCCAAAGAAACCAGCTGTTCTTCAACTCTTTCATTTGAACG
GTAGTGTTGATTATGAACCAGAAATGATTGAGCATGCTTTTTACAAGGAG
GAGAATCACACTGATCGAGTTCCGCCTTTTCATGCTTTTTCTGCTGCTGG
AGATGTTATGGCAGAACTTATGCATGTCAATTACGGCAATCAAAAAGATT
ATGAAGATATATTTGAACGCAATCTTGATGTTCAAGGCAAAATTGTTATG
GCTAAATTGGATAAGAATTGGCGTGGTGAAAAGgtACGCTTAGCAGAACT
ATACGGTGCGGTAGGTGTGTTGTTTTATACGGACCCTCGGGATGGCGGGC
GAAATCCAGGAACGAAGGGCTATCCGGACGACTGGGCACTACCGGAACAT
GCAATGAGACGTGGAGGTCTTTTGAATTTGAAAGGAGATCCGTTGACACC
TGGATGGCCTTCTACAGAGGGTATGTTTCGGATGAATGAATCATCGATCG
AAGGTCTTCCCCAGATCCCTGTTCAGCCAATCAGTGATCACATCGCCAAA
GAATTATTaagGAGTTGAATGAAgctgaatttagaaaatttaattcaGAA
ACGACGTTGGGCCGTTATAGCAACATGCATAGCTATCAGCTCATTCTTTA
TCGGATTTGTCTTCGACCGACATTTAACTGAAAATGACGGATTTTTGTCG
ATATTTCGACGTAATTTTGATTATTGTGATCGGTCGTGGCATGACGTGAA
TGAAGAATATTCGACGGCACATGACGCcgctttgaagaaaattgacgTCC
ATGAGATTGATAAAGTGTTCAAATATTTGGTAGAGAAACCACATCTTGGA
GGATCCATACGAAACAATGAGCTCGGTGATTACATGGCGGACAAATGGGA
ATCATATGGAATGAAAGTTTACAAGAAAACATATCAAGTGTTATTAAGTG
TTCCAAAGAAACCAGCTGTTCTTCAACTCTTTCATTTGAACGGTAGTGTT
GATTATGAACCAGAAATGATTGAGCATGCTTTTTACAAGGAGGAGAATCA
CACTGATCGAGTTCCGCCTTTTCATGCTTTTTCTGCTGCTGGAGATGTTA
TGGCAGAACTTATGCATGTCAATTACGGCAATCAAAAAGATTATGAAGAT
ATATTTGAACGCAATCTTGATGTTCAAGGCAAAATTGTTATGGCTAAATT
GGATAAGAATTGGCGTGGTGAAAAGgtACGCTTAGCAGAACTATACGGTG
CGGTAGGTGTGTTGTTTTATACGGACCCTCGGGATGGCGGGCGAAATCCA
GGAACGAAGGGCTATCCGGACGACTGGGCACTACCGGAACATGCAATGAG
ACGTGGAGGTCTTTTGAATTTGAAAGGAGATCCGTTGACACCTGGATGGC
CTTCTACAGAGGGTATGTTTCGGATGAATGAATCATCGATCGAAGGTCTT
CCCCAGATCCCTGTTCAGCCAATCAGTGATCACATCGCCAAAGAATTATT
aagGAGTTGAATGAAgctgaatttagaaaatttaattcaGAAACGACGTT
GGGCCGTTATAGCAACATGCATAGCTATCAGCTCATTCTTTATCGGATTT
GTCTTCGACCGACATTTAACTGAAAATGACGGATTTTTGTCGATATTTCG
ACGTAATTTTGATTATTGTGATCGGTCGTGGCATGACGTGAATGAAGAAT
ATTCGACGGCACATGACGCcgctttgaagaaaattgacgTCCATGAGATT
GATAAAGTGTTCAAATATTTGGTAGAGAAACCACATCTTGGAGGATCCAT
ACGAAACAATGAGCTCGGTGATTACATGGCGGACAAATGGGAATCATATG
GAATGAAAGTTTACAAGAAAACATATCAAGTGTTATTAAGTGTTCCAAAG
AAACCAGCTGTTCTTCAACTCTTTCATTTGAACGGTAGTGTTGATTATGA
ACCAGAAATGATTGAGCATGCTTTTTACAAGGAGGAGAATCACACTGATC
GAGTTCCGCCTTTTCATGCTTTTTCTGCTGCTGGAGATGTTATGGCAGAA
CTTATGCATGTCAATTACGGCAATCAAAAAGATTATGAAGATATATTTGA
ACGCAATCTTGATGTTCAAGGCAAAATTGTTATGGCTAAATTGGATAAGA
ATTGGCGTGGTGAAAAGgtACGCTTAGCAGAACTATACGGTGCGGTAGGT
GTGTTGTTTTATACGGACCCTCGGGATGGCGGGCGAAATCCAGGAACGAA
GGGCTATCCGGACGACTGGGCACTACCGGAACATGCAATGAGACGTGGAG
GTCTTTTGAATTTGAAAGGAGATCCGTTGACACCTGGATGGCCTTCTACA
GAGGGTATGTTTCGGATGAATGAATCATCGATCGAAGGTCTTCCCCAGAT
CCCTGTTCAGCCAATCAGTGATCACATCGCCAAAGAATTATTaagGAGTT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13069MSTRG.13069Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13069.2.p1MSTRG.13069.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13069.2.p1.exon1MSTRG.13069.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13069.2.p1.exon2MSTRG.13069.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13069.2.p1.exon3MSTRG.13069.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13069.2.p1.exon4MSTRG.13069.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13069.2.p1.exon5MSTRG.13069.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13069.2.p1.exon6MSTRG.13069.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13069.2.p1.exon7MSTRG.13069.2.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102_pilongenomesc0000102_pilon:27463..31585 +