MSTRG.13040.1.p1 (mRNA) -

Overview
NameMSTRG.13040.1.p1
Unique NameMSTRG.13040.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:651946..655223-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13040.1.p1 ID=MSTRG.13040.1.p1|Name=MSTRG.13040.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3278bp|location=Sequence derived from alignment at sc0000101_pilon:651946..655223- (Clytia hemisphaerica_ch_hm2_pilon)
TGTAGGATGTCACGAATATTTGTAGCTGATACAAAGGTAGCTGTGTGCAC
TCATAATGAACTGATCTTTTACATTTTTTGCATGTTAAGCGATCCAGGTC
TTTGTCATTGGTACATCATGACAGCGTGCAAGCTTTTTGAGTTAATTATC
AAATACATATCATACTTATATTATTTTTCTACCTAAAAGGAAAAAATATA
GAAAATCTTCAAAAATGTCAAAACCTTCAATGACTACACTGAGCATCATA
CTCAATATTACATCATCCATCTCAATTGTAATGTTAAACAAATGGATTTA
TACTCATTATGGGTTTCCAAACATCACGCTGACCTTTATACATTTCCTGG
TTACATTCCTTGGATTGAAGATTTGTGAAATGATGAACATTTTCAATCAC
AAAAGCGTACAATTGAAAGACTGTCTTCCATTGGCGATGTCGTTCTGTGG
CTTTGTAGTCTTAACAAATTTGAGTCTACAACATAACACAGTTGGAACAT
ATCAGCTGATCAAAGTGCTGACTACGCCTTGCATCATGATGATTCATACC
TACATGTACAATAAGAAATACTCTTATCAATACCACTTGTCATTAGTAAG
TTTTCAGACTTTTCATTAAAAAATAAGGATGTCATGAATCTTTGTGAAAT
TAGTAAAATACCGGGTGACCCACGAAAAAGTTCAGACGTTTCCCGACGTC
TTGAGGCCGAACAAATGTCCCAAAGTGCTCGGAGTATTGATATTTAGAAA
GTAGATATCCTAACTTAAAATTTGAGCCATCACTTTTTAAATTTGACCTA
CTTGTTCTCTACTTATGACCTTTTTAAGTCAAAATTCACTTTTCGAAAAG
TGTAAAAAACACGTAAAAAAGAGGTATTAAATTCACGAAATCAATTAGAA
AATCTTACAAATTGACTTATTTAACGAGTTTTATGACATTAATAATTAAT
AAAAACACTTTTGAAAGTAGTTTTTGTTTAAAACAAGACTAGTTTTTATG
AAAATTGGCGCTTTCATAGATTCTTTTCAAAAACTGTATATCAAAAACGT
CTAAAAATACCAAATTTGATACCCCTTTTTTACGTGTTTTTTACACTTTC
CGTAAAGTGAATTTTGACTTTAAAAGCTCATAAGCAGAGAACAAGTTGGT
CAAATTTAAAAAGTGATAGCTCAAATTTTAAGTTAGGATATCTATTTTCT
AAATATCAAAACTCCAAGCACTTTGGGACATTTGTTCGGCCTCAAGACGT
CGGGAAACGTCTGAACTTTTTCGTGGGTCACCCGGTATATAAAATTTTCA
CTTCACATTTGTAGTATGTTTAATGCCTTCAATGCTGTACTACTATAGCA
AATCACTTGTTTGAATGAATGTTTTCTATTTTTTAACAGATTCCTATAAC
ATTTGGTGTATTCCTGAACACATATTATGATGTTGCATTCAACTCATTAG
GAATTTTCTTTGCTGGTTTGGGTGTTGTTGTTACGTCCTTCTATCAAGTG
GTGAGTAGTGTAGTATTTGTTTCAGAAGAAAATAACTGAACACAAGCAAG
GGCATAAAATACTCTAGCTAATTATTACTCTATGAACAGTGTTAAAAGAT
TTTCTGTATAAGATGGATTTTCTGTCCCAAATTCTGCAAATTCTATTAAA
ATTTCACCAATATGTGCTAATTTGCTGTGTAAAATCTAGCTTTCCTCTCT
GACAAAAATCTTACGTTGACCTCTCACACTGTGTTTAGATTCTTTGATTA
ATTCTCTTTTCAGTGGGTTGGAAAACTACAAAAGGATTTGAACATAAATT
CAATGCAATTATTATATTATCAGGTTTGTCACTTTGATTATCTGTTTTTA
TTTGCCTCAAAATTTTCTTTTTTGTAATAATTATTAATTTATTATTTTGA
TTGTAAATCTCATGGGTTTGGATGCGATGTCTTAATTTTCCTTTTTCAAC
AGCTTGGAGATGAAGCACTGTTCCGAAAATTTTATAGCATAACAAAAATT
TTGTATTTTGATCGCGTATCACATTTAATGTTTTAGGCTCCATTATCAGC
AATGCTTTTGTTGTTTGTTATTCCATTTTTCGAAAATGTATATGGAGAAA
AAGGGTTGATATATCCCTGGCCAATGAAAGTTTGGGTAAGAGTTTGATGA
TTTCTAAATAACAGAACTATCACACCTGATTTGTGTACAGTTTCTTATCA
GGATTTGCATCCTGGCTATGAAAGAAAAAATTTCGAAGAGTTTCAAAGCC
AGGGGTTAAGACGGATTATCTATTATGGTTTTATTTTATCATAAAAATTA
TCCCCAGATTCAGTTGTATATGATAGGTTTCAAATTATGTTTCATTGTAG
ATTGCAGTGTTTGCATCAGGAATTATTGCTTTCTCAGTGAACTTGACCAT
CTTCTGGATCATTGGAAATACCTCACCCGTCACGTATCCTTTTTAGTTGG
ATTTTGTTTCCACTCCTTTGTCTGAAACAGTTTGATATCTCGCCCACATT
TCTACATTTCTATCTTGAAATTCAAAACTTTGTTCTGAGTAAAATTATCA
TTACGTCTGAAATGGAAAATCTTTTAAACTTGCATCGCCTTATTTACCAA
TATTTTCCTTAACCAAAAGCATATAACAGGTATAATATGGTTGGACATCT
CAAATTCTGTTTGGTTTTGATCATTGGATATCTTTTGTTCAACTCTCCCA
TGATGGTGAACCAAATATTTGGCTTGCTTTCCACCTTGCTCGGGGTCTTC
TACTATTCACACTTGAAGTTGCGCGAACAAGAAGCACAAAAGAAAGCTGT
GTCTACGAGGAGAGTATGAAATCTACCAACTACAATTTCTGGTTTACAAT
TAGTTCTGGTATGCAAATTATTAATTTACATTTTTAGGAAATATTAATAT
ATATGAATTTATTTAGAGTACTTTTCCAATTTAGGGTTTTTATTCCTGGT
GTTTATAGGAATCGAAGGCGTAGTTTGAAAGTTTTAAAGGGCGTTTTCAA
ACCATAGTCATGTTAAAATTCAAACTGATTTGCTTCAGAAAGAAATCAGC
ATATTTTGATTGTGGAGGATATTGTTTCCAATTACTACACATCTTCCATA
TAAGTTTAAGTATAATTTCTGTAACAACTTCTCAACTCTAGCACTTAATT
CTTGCTGTTGGTGGAAAAGATACCTTACAAGTACAATTTCAGCCCCACTC
GGAAATTGACTTTGATTTCATCCCTGTTCGAAAGTAGAAAAGAATTGCAC
AAAGGCTTCCCACTTAAATTGTTTAGCT

Coding sequence (CDS) from alignment at sc0000101_pilon:651946..655223-

>MSTRG.13040.1.p1 ID=MSTRG.13040.1.p1|Name=MSTRG.13040.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5544bp|location=Sequence derived from alignment at sc0000101_pilon:651946..655223- (Clytia hemisphaerica_ch_hm2_pilon)
GTATAATATGGTTGGACATCTCAAATTCTGTTTGGTTTTGATCATTGGAT
ATCTTTTGTTCAACTCTCCCATGATGGTGAACCAAATATTTGGCTTGCTT
TCCACCTTGCTCGGGGTCTTCTACTATTCACACTTGAAGTTGCGCGAACA
AGAAGCACAAAAGAAAGCTGTGTCTACGAGGAGAGTATGAATTGCAGTGT
TTGCATCAGGAATTATTGCTTTCTCAGTGAACTTGACCATCTTCTGGATC
ATTGGAAATACCTCACCCGTCACGCTCCATTATCAGCAATGCTTTTGTTG
TTTGTTATTCCATTTTTCGAAAATGTATATGGAGAAAAAGGGTTGATATA
TCCCTGGCCAATGAAAGTTTGGTGGGTTGGAAAACTACAAAAGGATTTGA
ACATAAATTCAATGCAATTATTATATTATCAGATTCCTATAACATTTGGT
GTATTCCTGAACACATATTATGATGTTGCATTCAACTCATTAGGAATTTT
CTTTGCTGGTTTGGGTGTTGTTGTTACGTCCTTCTATCAAGTGATGTCAA
AACCTTCAATGACTACACTGAGCATCATACTCAATATTACATCATCCATC
TCAATTGTAATGTTAAACAAATGGATTTATACTCATTATGGGTTTCCAAA
CATCACGCTGACCTTTATACATTTCCTGGTTACATTCCTTGGATTGAAGA
TTTGTGAAATGATGAACATTTTCAATCACAAAAGCGTACAATTGAAAGAC
TGTCTTCCATTGGCGATGTCGTTCTGTGGCTTTGTAGTCTTAACAAATTT
GAGTCTACAACATAACACAGTTGGAACATATCAGCTGATCAAAGTGCTGA
CTACGCCTTGCATCATGATGATTCATACCTACATGTACAATAAGAAATAC
TCTTATCAATACCACTTGTCATTAGTATAATATGGTTGGACATCTCAAAT
TCTGTTTGGTTTTGATCATTGGATATCTTTTGTTCAACTCTCCCATGATG
GTGAACCAAATATTTGGCTTGCTTTCCACCTTGCTCGGGGTCTTCTACTA
TTCACACTTGAAGTTGCGCGAACAAGAAGCACAAAAGAAAGCTGTGTCTA
CGAGGAGAGTATGAATTGCAGTGTTTGCATCAGGAATTATTGCTTTCTCA
GTGAACTTGACCATCTTCTGGATCATTGGAAATACCTCACCCGTCACGCT
CCATTATCAGCAATGCTTTTGTTGTTTGTTATTCCATTTTTCGAAAATGT
ATATGGAGAAAAAGGGTTGATATATCCCTGGCCAATGAAAGTTTGGTGGG
TTGGAAAACTACAAAAGGATTTGAACATAAATTCAATGCAATTATTATAT
TATCAGATTCCTATAACATTTGGTGTATTCCTGAACACATATTATGATGT
TGCATTCAACTCATTAGGAATTTTCTTTGCTGGTTTGGGTGTTGTTGTTA
CGTCCTTCTATCAAGTGATGTCAAAACCTTCAATGACTACACTGAGCATC
ATACTCAATATTACATCATCCATCTCAATTGTAATGTTAAACAAATGGAT
TTATACTCATTATGGGTTTCCAAACATCACGCTGACCTTTATACATTTCC
TGGTTACATTCCTTGGATTGAAGATTTGTGAAATGATGAACATTTTCAAT
CACAAAAGCGTACAATTGAAAGACTGTCTTCCATTGGCGATGTCGTTCTG
TGGCTTTGTAGTCTTAACAAATTTGAGTCTACAACATAACACAGTTGGAA
CATATCAGCTGATCAAAGTGCTGACTACGCCTTGCATCATGATGATTCAT
ACCTACATGTACAATAAGAAATACTCTTATCAATACCACTTGTCATTAGT
ATAATATGGTTGGACATCTCAAATTCTGTTTGGTTTTGATCATTGGATAT
CTTTTGTTCAACTCTCCCATGATGGTGAACCAAATATTTGGCTTGCTTTC
CACCTTGCTCGGGGTCTTCTACTATTCACACTTGAAGTTGCGCGAACAAG
AAGCACAAAAGAAAGCTGTGTCTACGAGGAGAGTATGAATTGCAGTGTTT
GCATCAGGAATTATTGCTTTCTCAGTGAACTTGACCATCTTCTGGATCAT
TGGAAATACCTCACCCGTCACGCTCCATTATCAGCAATGCTTTTGTTGTT
TGTTATTCCATTTTTCGAAAATGTATATGGAGAAAAAGGGTTGATATATC
CCTGGCCAATGAAAGTTTGGTGGGTTGGAAAACTACAAAAGGATTTGAAC
ATAAATTCAATGCAATTATTATATTATCAGATTCCTATAACATTTGGTGT
ATTCCTGAACACATATTATGATGTTGCATTCAACTCATTAGGAATTTTCT
TTGCTGGTTTGGGTGTTGTTGTTACGTCCTTCTATCAAGTGATGTCAAAA
CCTTCAATGACTACACTGAGCATCATACTCAATATTACATCATCCATCTC
AATTGTAATGTTAAACAAATGGATTTATACTCATTATGGGTTTCCAAACA
TCACGCTGACCTTTATACATTTCCTGGTTACATTCCTTGGATTGAAGATT
TGTGAAATGATGAACATTTTCAATCACAAAAGCGTACAATTGAAAGACTG
TCTTCCATTGGCGATGTCGTTCTGTGGCTTTGTAGTCTTAACAAATTTGA
GTCTACAACATAACACAGTTGGAACATATCAGCTGATCAAAGTGCTGACT
ACGCCTTGCATCATGATGATTCATACCTACATGTACAATAAGAAATACTC
TTATCAATACCACTTGTCATTAGTATAATATGGTTGGACATCTCAAATTC
TGTTTGGTTTTGATCATTGGATATCTTTTGTTCAACTCTCCCATGATGGT
GAACCAAATATTTGGCTTGCTTTCCACCTTGCTCGGGGTCTTCTACTATT
CACACTTGAAGTTGCGCGAACAAGAAGCACAAAAGAAAGCTGTGTCTACG
AGGAGAGTATGAATTGCAGTGTTTGCATCAGGAATTATTGCTTTCTCAGT
GAACTTGACCATCTTCTGGATCATTGGAAATACCTCACCCGTCACGCTCC
ATTATCAGCAATGCTTTTGTTGTTTGTTATTCCATTTTTCGAAAATGTAT
ATGGAGAAAAAGGGTTGATATATCCCTGGCCAATGAAAGTTTGGTGGGTT
GGAAAACTACAAAAGGATTTGAACATAAATTCAATGCAATTATTATATTA
TCAGATTCCTATAACATTTGGTGTATTCCTGAACACATATTATGATGTTG
CATTCAACTCATTAGGAATTTTCTTTGCTGGTTTGGGTGTTGTTGTTACG
TCCTTCTATCAAGTGATGTCAAAACCTTCAATGACTACACTGAGCATCAT
ACTCAATATTACATCATCCATCTCAATTGTAATGTTAAACAAATGGATTT
ATACTCATTATGGGTTTCCAAACATCACGCTGACCTTTATACATTTCCTG
GTTACATTCCTTGGATTGAAGATTTGTGAAATGATGAACATTTTCAATCA
CAAAAGCGTACAATTGAAAGACTGTCTTCCATTGGCGATGTCGTTCTGTG
GCTTTGTAGTCTTAACAAATTTGAGTCTACAACATAACACAGTTGGAACA
TATCAGCTGATCAAAGTGCTGACTACGCCTTGCATCATGATGATTCATAC
CTACATGTACAATAAGAAATACTCTTATCAATACCACTTGTCATTAGTAT
AATATGGTTGGACATCTCAAATTCTGTTTGGTTTTGATCATTGGATATCT
TTTGTTCAACTCTCCCATGATGGTGAACCAAATATTTGGCTTGCTTTCCA
CCTTGCTCGGGGTCTTCTACTATTCACACTTGAAGTTGCGCGAACAAGAA
GCACAAAAGAAAGCTGTGTCTACGAGGAGAGTATGAATTGCAGTGTTTGC
ATCAGGAATTATTGCTTTCTCAGTGAACTTGACCATCTTCTGGATCATTG
GAAATACCTCACCCGTCACGCTCCATTATCAGCAATGCTTTTGTTGTTTG
TTATTCCATTTTTCGAAAATGTATATGGAGAAAAAGGGTTGATATATCCC
TGGCCAATGAAAGTTTGGTGGGTTGGAAAACTACAAAAGGATTTGAACAT
AAATTCAATGCAATTATTATATTATCAGATTCCTATAACATTTGGTGTAT
TCCTGAACACATATTATGATGTTGCATTCAACTCATTAGGAATTTTCTTT
GCTGGTTTGGGTGTTGTTGTTACGTCCTTCTATCAAGTGATGTCAAAACC
TTCAATGACTACACTGAGCATCATACTCAATATTACATCATCCATCTCAA
TTGTAATGTTAAACAAATGGATTTATACTCATTATGGGTTTCCAAACATC
ACGCTGACCTTTATACATTTCCTGGTTACATTCCTTGGATTGAAGATTTG
TGAAATGATGAACATTTTCAATCACAAAAGCGTACAATTGAAAGACTGTC
TTCCATTGGCGATGTCGTTCTGTGGCTTTGTAGTCTTAACAAATTTGAGT
CTACAACATAACACAGTTGGAACATATCAGCTGATCAAAGTGCTGACTAC
GCCTTGCATCATGATGATTCATACCTACATGTACAATAAGAAATACTCTT
ATCAATACCACTTGTCATTAGTATAATATGGTTGGACATCTCAAATTCTG
TTTGGTTTTGATCATTGGATATCTTTTGTTCAACTCTCCCATGATGGTGA
ACCAAATATTTGGCTTGCTTTCCACCTTGCTCGGGGTCTTCTACTATTCA
CACTTGAAGTTGCGCGAACAAGAAGCACAAAAGAAAGCTGTGTCTACGAG
GAGAGTATGAATTGCAGTGTTTGCATCAGGAATTATTGCTTTCTCAGTGA
ACTTGACCATCTTCTGGATCATTGGAAATACCTCACCCGTCACGCTCCAT
TATCAGCAATGCTTTTGTTGTTTGTTATTCCATTTTTCGAAAATGTATAT
GGAGAAAAAGGGTTGATATATCCCTGGCCAATGAAAGTTTGGTGGGTTGG
AAAACTACAAAAGGATTTGAACATAAATTCAATGCAATTATTATATTATC
AGATTCCTATAACATTTGGTGTATTCCTGAACACATATTATGATGTTGCA
TTCAACTCATTAGGAATTTTCTTTGCTGGTTTGGGTGTTGTTGTTACGTC
CTTCTATCAAGTGATGTCAAAACCTTCAATGACTACACTGAGCATCATAC
TCAATATTACATCATCCATCTCAATTGTAATGTTAAACAAATGGATTTAT
ACTCATTATGGGTTTCCAAACATCACGCTGACCTTTATACATTTCCTGGT
TACATTCCTTGGATTGAAGATTTGTGAAATGATGAACATTTTCAATCACA
AAAGCGTACAATTGAAAGACTGTCTTCCATTGGCGATGTCGTTCTGTGGC
TTTGTAGTCTTAACAAATTTGAGTCTACAACATAACACAGTTGGAACATA
TCAGCTGATCAAAGTGCTGACTACGCCTTGCATCATGATGATTCATACCT
ACATGTACAATAAGAAATACTCTTATCAATACCACTTGTCATTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13040MSTRG.13040Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13040.1.p1MSTRG.13040.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13040.1.p1.exon6MSTRG.13040.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13040.1.p1.exon5MSTRG.13040.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13040.1.p1.exon4MSTRG.13040.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13040.1.p1.exon3MSTRG.13040.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13040.1.p1.exon2MSTRG.13040.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13040.1.p1.exon1MSTRG.13040.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:651946..655223 -