MSTRG.13027.1.p1 (mRNA) -

Overview
NameMSTRG.13027.1.p1
Unique NameMSTRG.13027.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:391835..398152-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13027.1.p1 ID=MSTRG.13027.1.p1|Name=MSTRG.13027.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6318bp|location=Sequence derived from alignment at sc0000101_pilon:391835..398152- (Clytia hemisphaerica_ch_hm2_pilon)
CTTGAAATGAGAAAATTAAAGCCAATTCCTGTAAGAATTAAAATATTTAT
TGGTGATGTAGGCTAAGCTTTAAGCCCTGGGATTTCCCTATATTACATGG
AAACAAATATGGTAGAGAAGCCGTGAATTTGTAAACAATCTCAAAAAAGA
ACATTTTTCTGCAAAAAATACTGCTAGCACCAGACAGCACGATGTCAACA
TCAAGGCCAAAATACTTCACTCCAAATGAAGTAAGTGTTCACAATACACA
GAAAGACATATGGGTTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTT
TGAGTGTTCAACATCAAGGTATGTTTGTAGCTTTTTTTATCCAAATTTTT
TAAGTTTTCAACTTTACTTTTACAGGACTGGTGGTGGTCTGATATTATGC
GTATGCATCATTGTGTTATTTTTAATACTAAATTTATTTGACATGGTCAG
GTTCTGGAGGTCACTCACAGTATAGGTTTCGGGATGTGCTGGCTGCTGGT
TGACCAAAAACCGGTCAAAAACTGGTCAGAAAAAAATATTAAGCTTTGTT
GATGTTGTTTGTATCTGGCAGCTCGTGAAATTTTTCGGTCCAAGCATTAA
AAACTGCTTTCAGACAGAGACAGGGTGTCCATCTTATATCTTATCAGATT
ACAGCAGCAAGCACCTCTCTTTTATGTCATCAAGGAAGATTCAAGGTCGG
TAGCAGGACCCTCCCGGCGCTCCGGAAACTTCCTGAGTTTTCCGGCGGAG
CAGCTAAAAAAACAATTTTTTTCTCTCCAAAAAGTTCTGGAGCTCTTCCG
GTGCTTCCGAAGGAAGTGATTCTTAACACAGTTCCGGTGCAGACCAATCG
TCGAAAAACGTACTCTGAGAATTTTCCAGTAGTGTTTCAGAGCACGAAAA
AAACAGCACTTTTAGCTCCGGACGTTTCTGGATCGGAGCGCCAGGAGGGT
CCTTCAGTAGCCCCCTGTAGGTTTATATGATGGCATAATTGTAGTTGAGT
CCCGACACGGGATTGTAATTCACTCCCGACGAAATTTTTAAGAATTTTCG
TTAAAGAAAGAAGAAAAATGGCGGGACTGAACTGCAAGTATATATATAGC
ATTTGGCGGGACTAAACTGCAAGTATATATTATAGTAATTGGCGGGACTG
AACTGCAAGTATATATATAGTAATTGGCGGGATTGAACTGCAAGTATATA
TATAGTAATTGAGTAATAATTTTCCTTTTGTTAGTTTAGTCCCTTTAAAA
GAAGGACTGGCGGCTTGAACTTTGAAAACAGGGAAGAACGGGGCTAATTA
TAAATAATACGCACTAATTATAAGGCTTTTAAGTATTTGTCGGGACTGAA
ATTCAGTCCCGCCATTAAATTATCGGGACTGAAATACAGTCCCGCCGAGT
ATTTGGCGGGACTAAACTGCAAGTATATATATAGTAATTGGCGGGACTGA
ACTGCAAGTATATATATATATAGTAATTGAATAATAATTTTCCTTTTGTT
AGTTTAGTCCCTTTAAAAGAAGGATTGGCGGCTTGAACTTTGAAAACAGG
GAAGAACGGGGCTAATTATAAATAATACGCACTAATTATAAGGCTTTTAA
TTATTTGTGGGGACTGAAATTCAGTCCCGCCATTAAATTATCGGGACTGA
AATACAGTCCCGCCGAGTATTTGGCGGGACTTAACTGCCAGTATATATAT
AGTAATTGGCGGGACTGAACTGCAAGTATATATAGTTTTTGCGGGACGGA
ATTATTTCCCGTTCTTTAAAAGGATTATACTAAGGGGTTATTCTAAAGAA
CGGAAGATACACTGTCATAATTTAAAGTCCACTCCCAATTTTTCCCGTTC
TTTAAAAGCATTATAGAAAGGGGTTATTCTAAAGAACGGAAGATACACTA
TTATATCTTATAACTAGTCCATACCCAATTATTGCCCGTTCTTTAAAAGC
ATTAAAGAAAGGGGTCATTCTATAGAACGGAAGATACACTATTATAATTT
ATAGTCCATACCCAATTATTGCCCGTTCTTTAAAAGCATTATAGAAAGTA
GTTATTTTAAAGAACGGAAGATACACTATTATATCTTATAGTCCATACCC
AATTATTTCCCGTTCTTTAAAAGTATTATAGAAAGGGGTTATTCTAAAGA
ACGGAAGATACACTGTTATATCTTATAGTCCATACCCAATTATTTCCCGT
TCTTTAAAAGTATTATAGAAAGGGGTTATTCTAAAGAATGGAAGATACAC
TAACATATCTGATAGTCCATACCCAATTTTTGCCCGTTCTTTAAAAGCAT
TATAGAAAGGGGTTATTTTAAAGAACGGAAGATACACTATTATATTTGAT
AGTCCATACCCAATTATTGAAAGTACTGATTTACTGTCGTCCTCAATTAA
TCAGGAATTAGGCAAATCAAAAATGAATCGGTCCCGTTAATTTGACGTTT
AGTTTAGTTTTATAGTGCACAGTGAAGGTTATCAAGAGTAATAGTAGCCA
TCAAATAAGTGAGTTTTCATTTTATTTCTTTCCAATTTTTTCACAAATAA
GATCATCAATTTAGATTTGAAAAAATCAGTCCCCCCGGGGGACTCAAGTG
CAATTATGCCTATATGATTAATAAAAAAAGGTTTATCTTTTAGATCATCA
GAAGCTTTGAGTTTTTTGTGGTAAAAAATAATGGAAAATGGGGAACTTCC
CTAAATTCTGCATAATTTATGCAAAATTAAAGGCATTCTTTACTACTAAA
ACGTCCATATGGTACCATCTGATCTATAAAAGTTGGAAAGTTGTTGTACT
TTAGTACATTTTTTTTCTCAGTTTGCAGAGCTCTATCAAGTGACTATAAT
ATATGAATACCTTAAGGGACAGTAAAGGAAGAAATATTTGCGGGATTTAA
TTTTGCGGTTCACAGCTAGCTCAAAATTTGGAAGTTTCACAGAATTTAAT
TTCGTGGTTGAGAGGAATTTTTCTTTAAATATACGAAAAACTGCAAAATT
TTAAATCCCATGAAAATTTGTTCTGTAAATTTTTTTTCCCATGAAAACTT
CTCCCCTTAAAGGTAAATGCCCCCTTCCTTTAAACGTTACCTTGAATAAA
AGCCCTCCCCTCAAGGAAAAGTTTTCAGAAAATGTCCCCTTTAAATAAAC
CCCTCCACTCTAGGAGGGGTGTTTATTTGAAACAAGTGTCTTTTGAAGGA
GAATCATTTAGAGGAAAACTTAAATAAATTTTAATCACCGTTATTATTTT
TTAACTGAAAGGTCACTTTGCAACCTGGATTTACAGGAGGCTATTGAAAA
TCCCAGGCTTATATAGTGATTGAAAATGGAATTTTTCTATTCTTTTAGCA
GAAACAGTACTTCCAATGATTTTCCAAACCTAAAAACTTTTGCTGGTGTA
CCCAGGGCCTTGTTTTTACCTCGCCATTCCAGAAAATTTGCACTTAAAAA
TGCGTTAATTTCTCTCAAAAATGCTTATAGATCACATGGGTTTTGTTTTT
GTTGCTGAAACTAGGCAACTTTCTCTACCAGGGACAATTAACAGTTTTTC
TCAACATTATTCGCAAATATCACACTTTTCGAACTTTAAACACCTTCTTT
TAGGGCCTGTAGAGCCCAGCCAGGTTGAGTGAAAGACATGAAAGACATTT
GATCTTTGTTAGTAGGTGAACAGCTTTTGGCAAAAATAAAATTCCTAAGC
TGCTCAACGGGTGAGTAATCAAGGGTTAATAAATTTGTCAAAAAGTGAGT
TTTGTGCCATATCTAGGCTGCCATTATGGAAAGTGCGAGTAAGGTAACAT
GATTGGTCCACTAGGGATTAGAACCCAAAATTTAGGATTTTGAGTTTTTC
ATTATTGTCTACCAAATATCCAAAAATAAAGGCAAACAAAATTTCATACT
GACACTTCCTTCTTGGTTCGTAGAGAGTATGGCTCTTGAACTAAAAAAAA
CGAAAAGGCAACATAAAGTTGCCATTTACCCTATGGTTAAAGAATATTTA
ATAAACACCTGCTTCTTTAAAACGCCCCCTCGATTATACACCCCTCCTAA
AATTCAAAAAATTTAATGAATGTCTGCACATTTATTCCAAGTAATACGAT
AGGTGTTTTTTTGATTTTTCTGGCCTTAAAAAAAAACAAAACAGAACTAC
GCAAAAACTACTGGTTTTCAAGCTTGGTAATATTTGAATACCAAATCAGC
ACCCTCGAAATCTTGAAAATAAGTGAAGCATTTTGAGGGGGCATGCCATG
GCCTGTATAGTTTCATTATGAAACTATCACTGGAACTTCAAAAAAACATG
TTTTGTTTTAACATGATATATACAAGGAATATTCTATTGTAACTTTTTAT
TTTTGAGTTTAGATCTGAAGATGATCAAATTGATCGAAATAAATCTATTG
TCAAATTAAATATGATACCATTGTTGGTCTTTTTATCTCAAAATTGTTGA
CTCAACTTTTTACCAAATTGTATGAGATTAATCAAATTTGCGATGTATTT
CTGATACATACTTCTACCCAAATTGAAGTTCAGTCAAAAACCAATCATTT
TCAAGCACTTAAAAATGCCTATTCTTGCCATTCGTGCTGTTTTTGTTGTT
GTTATTTTTCGTCTTCTTCTTTTAGGTGATGTACTTTTAAAACCTATCAT
AGCAAACGGTGGTAAAGATTTATCTCATTGGTTTGACAAGAAAACTAAAG
ATGTAAGTATTATTAGATCACCACAATCCCTCAATTCATACTTTCACAAG
CTTCACTAGAACATCCTTCTACATCGGAATTAAAATAAAGCCGCTCGTCA
GGAAAAGCAGCTTTCAAAAACTTTTAGCTGAGTGTGCAGTGATTTAAATA
AGATGAAGTTACTTAAGCTGCATATTATGGAAGAATTCTGGATTGTTTTG
GTATGATACATTTAGCAGTTAAATCACAACACTCTTTTTTCTTCAGATTC
GAATGTACGTAGACCCGATCACCAAATGTCAGTTTCCCTATACTCCTTTC
GGGCGAATCATACACACACCTCCTCTTTGTCCAAGGACGGATTGGGCGAA
TGATTTTGGAAGACCCTGGTGGAAGAATGAAAATTATTGTATTGGTGTAC
TTTCTCAAAAAACGCGAAAGATTCGAATCGTAAACACGTTAACTTCCCAA
GAACAAGTTCTAGAGGTAACATATTGTAATTTTTTTTAATTTTTTTTACA
AATCGTATTTGATCAAGCATTGAATTACGAACCAATTCCAATTCCACCCT
CATCTCAAAATGAGATTGACGACACGATCGAGACTCTCAAAAATATATAT
CCCACTAATTCAGAAGATCTCCGAAGAGATTTCCAAGAAACTGAAGAAAA
AAAAAAACAAGAAAATGAAACAATCAACAATCAAAGACTTTTGAAAAATT
ATGAATTTAGTATTTCATTATTCTAACTCGAAAATACAAAAAATTGTTCG
AAAAAAACTATCATTGTAGCCTCTTAGCTTAAACCTGGGAATAAAATTTT
TCATCGAATCAGGTCGAAAATACGAAAACTCATCTAGTTCGAAACTCATG
TAATTCGAACAAAATTTTCGGTCCATTGAGAATTCGAATTACACTAGTTC
AACTGTAAATGTCTTTTTGTTTTCAAGTAAATTATTAACAGAAGACCAAC
TTTTTCATCTTTTACAGGTTTGCTCGGAAGAGAATATGCGAGAAATCCAG
AACCGTTATTTTCACTACAACAAGCATGCCGGTAGTTACACTTGGAAATT
CAATGGACAAAATTTGAACATGGAAAGAACTTTACAAGAGAACAATGTGA
AAGATGAAAGTGAAGATTTTTATGTTTTGGGAATGGATGAAGAGCAGTAT
TTGCCAGCTCTTCACCTATATTTCAATGATGATCTGACTGAGGCTTGATT
ACGAAGTATGTACGATCTCGAAAAGCGTGAACATCTCTCATTGTAAAATA
TTGGTAAAATACCGTAGAGCGCTTGACTTTTCTTGTTTTCTGGAAAACTT
TCATGGCGCATTTCATTATCAGAATTATCTGTTTTTATCGAGCATAACAA
CGGCAAAAAGGCAAAGAAAGTTTATCCGTTCTACGGTAGAGATGATTTTA
GATTGACGGCTGACTAGTGGACATTTCTCTTTTTTTTTATGGGTAAATTA
TTCGAAACACATTTTATTGTAAAAATAACTTTTTGTAAATATTTCGCGAT
AAAAATAATATTGCTTCCATTACCTTTAAAAATGAATATGATGTTAATAC
TTTACTGCGCAGGGGAGTCAATAAATTTATTGGAGAAAAATTGTTCAATT
CCCCTTTTCGAAAATCTT

Coding sequence (CDS) from alignment at sc0000101_pilon:391835..398152-

>MSTRG.13027.1.p1 ID=MSTRG.13027.1.p1|Name=MSTRG.13027.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2616bp|location=Sequence derived from alignment at sc0000101_pilon:391835..398152- (Clytia hemisphaerica_ch_hm2_pilon)
GTTTGCTCGGAAGAGAATATGCGAGAAATCCAGAACCGTTATTTTCACTA
CAACAAGCATGCCGGTAGTTACACTTGGAAATTCAATGGACAAAATTTGA
ACATGGAAAGAACTTTACAAGAGAACAATGTGAAAGATGAAAGTGAAGAT
TTTTATGTTTTGGGAATGGATGAAGAGCAGTATTTGCCAGCTCTTCACCT
ATATTTCAATGATGATCTGACTGAGGCTTGAATTCGAATGTACGTAGACC
CGATCACCAAATGTCAGTTTCCCTATACTCCTTTCGGGCGAATCATACAC
ACACCTCCTCTTTGTCCAAGGACGGATTGGGCGAATGATTTTGGAAGACC
CTGGTGGAAGAATGAAAATTATTGTATTGGTGTACTTTCTCAAAAAACGC
GAAAGATTCGAATCGTAAACACGTTAACTTCCCAAGAACAAGTTCTAGAG
GTGATGTACTTTTAAAACCTATCATAGCAAACGGTGGTAAAGATTTATCT
CATTGGTTTGACAAGAAAACTAAAGATATGTCAACATCAAGGCCAAAATA
CTTCACTCCAAATGAAGTAAGTGTTCACAATACACAGAAAGACATATGGG
TTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTTTGAGTGTTCAACAT
CAAGGTTTGCTCGGAAGAGAATATGCGAGAAATCCAGAACCGTTATTTTC
ACTACAACAAGCATGCCGGTAGTTACACTTGGAAATTCAATGGACAAAAT
TTGAACATGGAAAGAACTTTACAAGAGAACAATGTGAAAGATGAAAGTGA
AGATTTTTATGTTTTGGGAATGGATGAAGAGCAGTATTTGCCAGCTCTTC
ACCTATATTTCAATGATGATCTGACTGAGGCTTGAATTCGAATGTACGTA
GACCCGATCACCAAATGTCAGTTTCCCTATACTCCTTTCGGGCGAATCAT
ACACACACCTCCTCTTTGTCCAAGGACGGATTGGGCGAATGATTTTGGAA
GACCCTGGTGGAAGAATGAAAATTATTGTATTGGTGTACTTTCTCAAAAA
ACGCGAAAGATTCGAATCGTAAACACGTTAACTTCCCAAGAACAAGTTCT
AGAGGTGATGTACTTTTAAAACCTATCATAGCAAACGGTGGTAAAGATTT
ATCTCATTGGTTTGACAAGAAAACTAAAGATATGTCAACATCAAGGCCAA
AATACTTCACTCCAAATGAAGTAAGTGTTCACAATACACAGAAAGACATA
TGGGTTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTTTGAGTGTTCA
ACATCAAGGTTTGCTCGGAAGAGAATATGCGAGAAATCCAGAACCGTTAT
TTTCACTACAACAAGCATGCCGGTAGTTACACTTGGAAATTCAATGGACA
AAATTTGAACATGGAAAGAACTTTACAAGAGAACAATGTGAAAGATGAAA
GTGAAGATTTTTATGTTTTGGGAATGGATGAAGAGCAGTATTTGCCAGCT
CTTCACCTATATTTCAATGATGATCTGACTGAGGCTTGAATTCGAATGTA
CGTAGACCCGATCACCAAATGTCAGTTTCCCTATACTCCTTTCGGGCGAA
TCATACACACACCTCCTCTTTGTCCAAGGACGGATTGGGCGAATGATTTT
GGAAGACCCTGGTGGAAGAATGAAAATTATTGTATTGGTGTACTTTCTCA
AAAAACGCGAAAGATTCGAATCGTAAACACGTTAACTTCCCAAGAACAAG
TTCTAGAGGTGATGTACTTTTAAAACCTATCATAGCAAACGGTGGTAAAG
ATTTATCTCATTGGTTTGACAAGAAAACTAAAGATATGTCAACATCAAGG
CCAAAATACTTCACTCCAAATGAAGTAAGTGTTCACAATACACAGAAAGA
CATATGGGTTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTTTGAGTG
TTCAACATCAAGGTTTGCTCGGAAGAGAATATGCGAGAAATCCAGAACCG
TTATTTTCACTACAACAAGCATGCCGGTAGTTACACTTGGAAATTCAATG
GACAAAATTTGAACATGGAAAGAACTTTACAAGAGAACAATGTGAAAGAT
GAAAGTGAAGATTTTTATGTTTTGGGAATGGATGAAGAGCAGTATTTGCC
AGCTCTTCACCTATATTTCAATGATGATCTGACTGAGGCTTGAATTCGAA
TGTACGTAGACCCGATCACCAAATGTCAGTTTCCCTATACTCCTTTCGGG
CGAATCATACACACACCTCCTCTTTGTCCAAGGACGGATTGGGCGAATGA
TTTTGGAAGACCCTGGTGGAAGAATGAAAATTATTGTATTGGTGTACTTT
CTCAAAAAACGCGAAAGATTCGAATCGTAAACACGTTAACTTCCCAAGAA
CAAGTTCTAGAGGTGATGTACTTTTAAAACCTATCATAGCAAACGGTGGT
AAAGATTTATCTCATTGGTTTGACAAGAAAACTAAAGATATGTCAACATC
AAGGCCAAAATACTTCACTCCAAATGAAGTAAGTGTTCACAATACACAGA
AAGACATATGGGTTTCCTTTTTGGGAAAGGTGTACGATTTGACTCCTTTG
AGTGTTCAACATCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13027MSTRG.13027Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13027.1.p1MSTRG.13027.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13027.1.p1.exon4MSTRG.13027.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13027.1.p1.exon3MSTRG.13027.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13027.1.p1.exon2MSTRG.13027.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13027.1.p1.exon1MSTRG.13027.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:391835..398152 -