MSTRG.13026.1.p1 (mRNA) -

Overview
NameMSTRG.13026.1.p1
Unique NameMSTRG.13026.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:361196..364407-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13026.1.p1 ID=MSTRG.13026.1.p1|Name=MSTRG.13026.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3212bp|location=Sequence derived from alignment at sc0000101_pilon:361196..364407- (Clytia hemisphaerica_ch_hm2_pilon)
CACGCGAGGTTAATATTATAATAAATAGTTGAAATGGGACAAACTATCAA
CATAAATAATTTGGGAAGGTCCCGGCAGCCAACGATTGAGAAGTGGAAGA
GCATAAAATTATACTTCGGGTTTCTTGAGTTTAAGGAAGCATAAAAAAGA
GAAGCGAAATTTATAGAAATTTAATTGCTGGTTTGATCTTAAGCTGAAAC
TGTTAATGGTTTTGGTACTTTGAGTGGCATAATATCGACCAGTAAAAGTA
ATTGACAGACCACAAACTATCGTAATTGATTGCATTATTAAGTGCATTTC
TATATTTCGCAACGGTTACAGTTCAGAGAGATTAGAATTTGATAGCTGTG
TTGTAAATATACAATAAAATGCCTGACAGTGAAGTTCAAATGTCATGGGC
ACGAAAAGGTGAAATATTTATTTGTTTATAATATTTATTGACTCATTTTT
TAAAACGGTGCTCATGTAATAGTGAACAGTAAATTAAAGGGAAAACCAGA
CATGAGTCTCTAACAGGGTAAAAAGGGAGCCCTTTCAATCTGCTTTTAAA
CTTGATCATTAAAAAAATCAAAATGTTCGATTTGCATTTTAGAAGCTGTT
TTGAAGAAATATCAAGATTTGAAAAGATCGGATCAAAAATTATGCTTGAT
GAGTGAAAAGGTCTTCGAATCCATTTATGGTACCGTTCTAAACAAATGCA
AAAAACGTTTAACTGGGAGTGCCCGGGATGGTTCCGTTATTTCTCGGTGG
TTCAAAAAGACGGACGGACCTCAGAGGATTCATATTGAATGGGATGTGGA
GTATTATAACCTAGAAATAGAGCAAGAGAACTACGTGATTCAAGAGATAA
GCAATTACCCAGGTTATGTGCGTGTTCATGAGAGAAGCCAGGACGAAGAG
CAGCCTGGGCCACACATAGACGGAGAAGTATACAGAGGAAACTTATTCGA
GAAATGGTCCAACATTGTGACAAGACATAAAAAGCATATCAAAAGACAAT
TTAGCAATGTCTTCCACGAGCGATCTGGCATCAATGATTTCCAAGGCTTG
CATGGGAAAGAAGACTATTTCTTTAAGAAACTCCCTTGGACTAAACCACG
CGTGAGCCTTAAGATGGAAGGTTTATCTACCCTACTTGATATAGAGGATA
AAGAACAACGAGTTTGCTTTTCATGTGATAACATAGCAGCCATTCATTGT
AAAGACTTTTGGCCAAGGGGTGCAAAAGACTGGACAAAAAATTCAAGTTG
GAGTGAGGAGGATTTCGAGGAGCTTAAGCGAACAGGATGCTGTCTAGTGC
CAAAGCCTTCACGACACAGCGATCGCACATGGAGGTTATCTTTAAGTGAA
GTCGAATCAAAGGTTATGAAACGATTTACCAAACAACAATATCTAGCATT
TTTCATCTGTAAAATTGTGTATTACAAGTATTTGGCACACCTTAGAGATG
GCGAGTCTGAGATCAGATCTTATATTATAAAGAGTGCAGCACTGAATTGT
TTTGGTGTTTCTAACTTTCAACCGACGAGTTCGAATTTTTTTGAAGGCGT
TTTTCAACTGGTAGAGCGTTTGCTGGATTTTACAAGGCAAGCATTGAAGC
CAGAGCTAAAAGACGGTATCAAACCCTACATGACACATTTTTTGCTCAAA
GATGTCAATATTTTACTGAATGTCACCAATGATCTTGGATGGGAAGCTGC
TGGAGTCTTACAAGAGATTATTGACGGGGGCGTGGTTGCATTCCTACCAC
TGGAAGACGAAATTGATGAAGCAATTTCAATGGTGAATATTCTAGGAGAT
CGAGTGAACTATCTTTCCTCGCTTAAAGAACACTTCAACAATATTTCCAG
CAGATCATACTCGTGCTACACTAGAAAAATTTTGATGTCGATGGGGCAAG
ACGTACAAAATTCTTCTCAACTTCAGAGGTTAATATTTTATTTTTTTAAG
AGAAGGAGAGAGCTCTGGTTGAGATGGCACACTTTTCGACCTGCCTATTC
TAATTTATTTTTAAAATCCCTTCAAATTCTAATTAAATATGGAAGAAAGT
TCCTTCTTTTGACACGAATGCAATGTCTTCTTTCAATCTTTTTCAAGCAA
AGATTCTGTCCAATTTTTGCCTCAGTGCTGAAAGTAGTATTCCTTAGATT
TTGAAGAAACTGCTGCTGATTGTAAATAAATACCTTATTGGAACTAATTT
TCGCGGGTTTTAATTTTAGCGTTTTTCGCGGTTTTTCGTCAAAATCGCGA
AAATTTGATCCCGCGAAAAATGTTGAGAGTCGAAAACCGCGAAAATTAAT
TCCCGCGAAATACAATTTTTTTCAATTTTATCGAAAAATTTGAAAAATCC
CTAGGAAAATGAAAGAAATTTGTCCAAAAAAAGGCAAAACCGCGAAAATT
AAAACCCGCGAAAATTCCAGAATGGTTCCAATAAAGTAATTGAGGATTTA
TTATTTTGTAGCTGCAAAAGACAATCACTCGAACAGGATATACAAGAAGG
GGTTCAGCCAAAGCACGAAGACATTCTTCAATCATATGATTCTGGTTACG
GATCGTTACTTCACGAAAATAAGGGCTTCGAGAACTATGATTCCTACTCT
GACCAAGAAAATGAAAGTGACTGCTTCAGCGATTACACAGACCTGTCTTC
AGACTACAGCGATGTTGATGACGACTCTGATTGTAGCGCATCATTTTATG
ACTCCGAAGATGATGAATATCTTTCTGACTCTAGTTTCAGTGACCTTTCA
GAGTCTGGAGAATTCAATAGCAGTTTCTATAACGAGTCAACTGGCAACTC
CACTATTGATTGTGGGTCTAGTAGTACAACATCATACACGGAGTCTGTGC
ATAGTGATCTTGAAATATCTATTGGATCAAATAGTGACAACTCCATATTG
GATTCTAACAATAACGTCAAACACTTATTCAAAAAGCTAAGTTACAGCAA
CTTATCAAAGAGATTTAAAAGTAAAATCAATTTAAGCAAAGACACTGGTT
ACAGTAAACAATCTCAGACTAAACCAACCAGATTGAAGCTAAGTTCCTTT
CATAAGAAAGCATGGTGGTCACATTTATTCAATCATACCAAATAAACTTT
TTTATTACTTATCGATCCCTTAAACATTGCAAGAAATTGTTTAGTATAGT
CTGTCCTCTATAATCTGGGTTATGGCTTTTTTACAATCTCTTTATTGTCA
TTTACGACAGTG

Coding sequence (CDS) from alignment at sc0000101_pilon:361196..364407-

>MSTRG.13026.1.p1 ID=MSTRG.13026.1.p1|Name=MSTRG.13026.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6030bp|location=Sequence derived from alignment at sc0000101_pilon:361196..364407- (Clytia hemisphaerica_ch_hm2_pilon)
CTGCAAAAGACAATCACTCGAACAGGATATACAAGAAGGGGTTCAGCCAA
AGCACGAAGACATTCTTCAATCATATGATTCTGGTTACGGATCGTTACTT
CACGAAAATAAGGGCTTCGAGAACTATGATTCCTACTCTGACCAAGAAAA
TGAAAGTGACTGCTTCAGCGATTACACAGACCTGTCTTCAGACTACAGCG
ATGTTGATGACGACTCTGATTGTAGCGCATCATTTTATGACTCCGAAGAT
GATGAATATCTTTCTGACTCTAGTTTCAGTGACCTTTCAGAGTCTGGAGA
ATTCAATAGCAGTTTCTATAACGAGTCAACTGGCAACTCCACTATTGATT
GTGGGTCTAGTAGTACAACATCATACACGGAGTCTGTGCATAGTGATCTT
GAAATATCTATTGGATCAAATAGTGACAACTCCATATTGGATTCTAACAA
TAACGTCAAACACTTATTCAAAAAGCTAAGTTACAGCAACTTATCAAAGA
GATTTAAAAGTAAAATCAATTTAAGCAAAGACACTGGTTACAGTAAACAA
TCTCAGACTAAACCAACCAGATTGAAGCTAAGTTCCTTTCATAAGAAAGC
ATGGTGGTCACATTTATTCAATCATACCAAATAAAAGCTGTTTTGAAGAA
ATATCAAGATTTGAAAAGATCGGATCAAAAATTATGCTTGATGAGTGAAA
AGGTCTTCGAATCCATTTATGGTACCGTTCTAAACAAATGCAAAAAACGT
TTAACTGGGAGTGCCCGGGATGGTTCCGTTATTTCTCGGTGGTTCAAAAA
GACGGACGGACCTCAGAGGATTCATATTGAATGGGATGTGGAGTATTATA
ACCTAGAAATAGAGCAAGAGAACTACGTGATTCAAGAGATAAGCAATTAC
CCAGGTTATGTGCGTGTTCATGAGAGAAGCCAGGACGAAGAGCAGCCTGG
GCCACACATAGACGGAGAAGTATACAGAGGAAACTTATTCGAGAAATGGT
CCAACATTGTGACAAGACATAAAAAGCATATCAAAAGACAATTTAGCAAT
GTCTTCCACGAGCGATCTGGCATCAATGATTTCCAAGGCTTGCATGGGAA
AGAAGACTATTTCTTTAAGAAACTCCCTTGGACTAAACCACGCGTGAGCC
TTAAGATGGAAGGTTTATCTACCCTACTTGATATAGAGGATAAAGAACAA
CGAGTTTGCTTTTCATGTGATAACATAGCAGCCATTCATTGTAAAGACTT
TTGGCCAAGGGGTGCAAAAGACTGGACAAAAAATTCAAGTTGGAGTGAGG
AGGATTTCGAGGAGCTTAAGCGAACAGGATGCTGTCTAGTGCCAAAGCCT
TCACGACACAGCGATCGCACATGGAGGTTATCTTTAAGTGAAGTCGAATC
AAAGGTTATGAAACGATTTACCAAACAACAATATCTAGCATTTTTCATCT
GTAAAATTGTGTATTACAAGTATTTGGCACACCTTAGAGATGGCGAGTCT
GAGATCAGATCTTATATTATAAAGAGTGCAGCACTGAATTGTTTTGGTGT
TTCTAACTTTCAACCGACGAGTTCGAATTTTTTTGAAGGCGTTTTTCAAC
TGGTAGAGCGTTTGCTGGATTTTACAAGGCAAGCATTGAAGCCAGAGCTA
AAAGACGGTATCAAACCCTACATGACACATTTTTTGCTCAAAGATGTCAA
TATTTTACTGAATGTCACCAATGATCTTGGATGGGAAGCTGCTGGAGTCT
TACAAGAGATTATTGACGGGGGCGTGGTTGCATTCCTACCACTGGAAGAC
GAAATTGATGAAGCAATTTCAATGGTGAATATTCTAGGAGATCGAGTGAA
CTATCTTTCCTCGCTTAAAGAACACTTCAACAATATTTCCAGCAGATCAT
ACTCGTGCTACACTAGAAAAATTTTGATGTCGATGGGGCAAGACGTACAA
AATTCTTCTCAACTTCAGAGATGCCTGACAGTGAAGTTCAAATGTCATGG
GCACGAAAAGCTGCAAAAGACAATCACTCGAACAGGATATACAAGAAGGG
GTTCAGCCAAAGCACGAAGACATTCTTCAATCATATGATTCTGGTTACGG
ATCGTTACTTCACGAAAATAAGGGCTTCGAGAACTATGATTCCTACTCTG
ACCAAGAAAATGAAAGTGACTGCTTCAGCGATTACACAGACCTGTCTTCA
GACTACAGCGATGTTGATGACGACTCTGATTGTAGCGCATCATTTTATGA
CTCCGAAGATGATGAATATCTTTCTGACTCTAGTTTCAGTGACCTTTCAG
AGTCTGGAGAATTCAATAGCAGTTTCTATAACGAGTCAACTGGCAACTCC
ACTATTGATTGTGGGTCTAGTAGTACAACATCATACACGGAGTCTGTGCA
TAGTGATCTTGAAATATCTATTGGATCAAATAGTGACAACTCCATATTGG
ATTCTAACAATAACGTCAAACACTTATTCAAAAAGCTAAGTTACAGCAAC
TTATCAAAGAGATTTAAAAGTAAAATCAATTTAAGCAAAGACACTGGTTA
CAGTAAACAATCTCAGACTAAACCAACCAGATTGAAGCTAAGTTCCTTTC
ATAAGAAAGCATGGTGGTCACATTTATTCAATCATACCAAATAAAAGCTG
TTTTGAAGAAATATCAAGATTTGAAAAGATCGGATCAAAAATTATGCTTG
ATGAGTGAAAAGGTCTTCGAATCCATTTATGGTACCGTTCTAAACAAATG
CAAAAAACGTTTAACTGGGAGTGCCCGGGATGGTTCCGTTATTTCTCGGT
GGTTCAAAAAGACGGACGGACCTCAGAGGATTCATATTGAATGGGATGTG
GAGTATTATAACCTAGAAATAGAGCAAGAGAACTACGTGATTCAAGAGAT
AAGCAATTACCCAGGTTATGTGCGTGTTCATGAGAGAAGCCAGGACGAAG
AGCAGCCTGGGCCACACATAGACGGAGAAGTATACAGAGGAAACTTATTC
GAGAAATGGTCCAACATTGTGACAAGACATAAAAAGCATATCAAAAGACA
ATTTAGCAATGTCTTCCACGAGCGATCTGGCATCAATGATTTCCAAGGCT
TGCATGGGAAAGAAGACTATTTCTTTAAGAAACTCCCTTGGACTAAACCA
CGCGTGAGCCTTAAGATGGAAGGTTTATCTACCCTACTTGATATAGAGGA
TAAAGAACAACGAGTTTGCTTTTCATGTGATAACATAGCAGCCATTCATT
GTAAAGACTTTTGGCCAAGGGGTGCAAAAGACTGGACAAAAAATTCAAGT
TGGAGTGAGGAGGATTTCGAGGAGCTTAAGCGAACAGGATGCTGTCTAGT
GCCAAAGCCTTCACGACACAGCGATCGCACATGGAGGTTATCTTTAAGTG
AAGTCGAATCAAAGGTTATGAAACGATTTACCAAACAACAATATCTAGCA
TTTTTCATCTGTAAAATTGTGTATTACAAGTATTTGGCACACCTTAGAGA
TGGCGAGTCTGAGATCAGATCTTATATTATAAAGAGTGCAGCACTGAATT
GTTTTGGTGTTTCTAACTTTCAACCGACGAGTTCGAATTTTTTTGAAGGC
GTTTTTCAACTGGTAGAGCGTTTGCTGGATTTTACAAGGCAAGCATTGAA
GCCAGAGCTAAAAGACGGTATCAAACCCTACATGACACATTTTTTGCTCA
AAGATGTCAATATTTTACTGAATGTCACCAATGATCTTGGATGGGAAGCT
GCTGGAGTCTTACAAGAGATTATTGACGGGGGCGTGGTTGCATTCCTACC
ACTGGAAGACGAAATTGATGAAGCAATTTCAATGGTGAATATTCTAGGAG
ATCGAGTGAACTATCTTTCCTCGCTTAAAGAACACTTCAACAATATTTCC
AGCAGATCATACTCGTGCTACACTAGAAAAATTTTGATGTCGATGGGGCA
AGACGTACAAAATTCTTCTCAACTTCAGAGATGCCTGACAGTGAAGTTCA
AATGTCATGGGCACGAAAAGCTGCAAAAGACAATCACTCGAACAGGATAT
ACAAGAAGGGGTTCAGCCAAAGCACGAAGACATTCTTCAATCATATGATT
CTGGTTACGGATCGTTACTTCACGAAAATAAGGGCTTCGAGAACTATGAT
TCCTACTCTGACCAAGAAAATGAAAGTGACTGCTTCAGCGATTACACAGA
CCTGTCTTCAGACTACAGCGATGTTGATGACGACTCTGATTGTAGCGCAT
CATTTTATGACTCCGAAGATGATGAATATCTTTCTGACTCTAGTTTCAGT
GACCTTTCAGAGTCTGGAGAATTCAATAGCAGTTTCTATAACGAGTCAAC
TGGCAACTCCACTATTGATTGTGGGTCTAGTAGTACAACATCATACACGG
AGTCTGTGCATAGTGATCTTGAAATATCTATTGGATCAAATAGTGACAAC
TCCATATTGGATTCTAACAATAACGTCAAACACTTATTCAAAAAGCTAAG
TTACAGCAACTTATCAAAGAGATTTAAAAGTAAAATCAATTTAAGCAAAG
ACACTGGTTACAGTAAACAATCTCAGACTAAACCAACCAGATTGAAGCTA
AGTTCCTTTCATAAGAAAGCATGGTGGTCACATTTATTCAATCATACCAA
ATAAAAGCTGTTTTGAAGAAATATCAAGATTTGAAAAGATCGGATCAAAA
ATTATGCTTGATGAGTGAAAAGGTCTTCGAATCCATTTATGGTACCGTTC
TAAACAAATGCAAAAAACGTTTAACTGGGAGTGCCCGGGATGGTTCCGTT
ATTTCTCGGTGGTTCAAAAAGACGGACGGACCTCAGAGGATTCATATTGA
ATGGGATGTGGAGTATTATAACCTAGAAATAGAGCAAGAGAACTACGTGA
TTCAAGAGATAAGCAATTACCCAGGTTATGTGCGTGTTCATGAGAGAAGC
CAGGACGAAGAGCAGCCTGGGCCACACATAGACGGAGAAGTATACAGAGG
AAACTTATTCGAGAAATGGTCCAACATTGTGACAAGACATAAAAAGCATA
TCAAAAGACAATTTAGCAATGTCTTCCACGAGCGATCTGGCATCAATGAT
TTCCAAGGCTTGCATGGGAAAGAAGACTATTTCTTTAAGAAACTCCCTTG
GACTAAACCACGCGTGAGCCTTAAGATGGAAGGTTTATCTACCCTACTTG
ATATAGAGGATAAAGAACAACGAGTTTGCTTTTCATGTGATAACATAGCA
GCCATTCATTGTAAAGACTTTTGGCCAAGGGGTGCAAAAGACTGGACAAA
AAATTCAAGTTGGAGTGAGGAGGATTTCGAGGAGCTTAAGCGAACAGGAT
GCTGTCTAGTGCCAAAGCCTTCACGACACAGCGATCGCACATGGAGGTTA
TCTTTAAGTGAAGTCGAATCAAAGGTTATGAAACGATTTACCAAACAACA
ATATCTAGCATTTTTCATCTGTAAAATTGTGTATTACAAGTATTTGGCAC
ACCTTAGAGATGGCGAGTCTGAGATCAGATCTTATATTATAAAGAGTGCA
GCACTGAATTGTTTTGGTGTTTCTAACTTTCAACCGACGAGTTCGAATTT
TTTTGAAGGCGTTTTTCAACTGGTAGAGCGTTTGCTGGATTTTACAAGGC
AAGCATTGAAGCCAGAGCTAAAAGACGGTATCAAACCCTACATGACACAT
TTTTTGCTCAAAGATGTCAATATTTTACTGAATGTCACCAATGATCTTGG
ATGGGAAGCTGCTGGAGTCTTACAAGAGATTATTGACGGGGGCGTGGTTG
CATTCCTACCACTGGAAGACGAAATTGATGAAGCAATTTCAATGGTGAAT
ATTCTAGGAGATCGAGTGAACTATCTTTCCTCGCTTAAAGAACACTTCAA
CAATATTTCCAGCAGATCATACTCGTGCTACACTAGAAAAATTTTGATGT
CGATGGGGCAAGACGTACAAAATTCTTCTCAACTTCAGAGATGCCTGACA
GTGAAGTTCAAATGTCATGGGCACGAAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13026MSTRG.13026Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13026.1.p1MSTRG.13026.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13026.1.p1.exon3MSTRG.13026.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13026.1.p1.exon2MSTRG.13026.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13026.1.p1.exon1MSTRG.13026.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:361196..364407 -