MSTRG.1301.3.p1 (mRNA) -

Overview
NameMSTRG.1301.3.p1
Unique NameMSTRG.1301.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1531452..1535311-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1301.3.p1 ID=MSTRG.1301.3.p1|Name=MSTRG.1301.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3860bp|location=Sequence derived from alignment at sc0000006_pilon:1531452..1535311- (Clytia hemisphaerica_ch_hm2_pilon)
ACAAACAATTATTGAAAGACCGATGTTTGATGATTGAAGATCGAGGCAAG
ACATTCCACCCCGAACCACCCTTCTCCGCCCAAGCAGTTCTAGTGTTGTT
GAACGATGGCTTTTGCAAATCAATTATACCTTCTTCTCTGGAAGAATTAC
ACCCTGAAAAAGCGAAAACCTGTAAGTGTGAGATCATTTCTACGACAATT
TTTTTATACGCTGCTTAACTATCAAGAGAATTAAAATTATTTTGTGTTAT
TCATTCCTTTGAAACATCAAAGGTTTATAAATGATAATATTTTGTTTTGA
GTGGATTGAAAAAAAAAACTTTTGCCTTCACTGTGTGCTAGAATTAGGTC
TTAAAAATTAACTCGGGTCCTACATTGTGAAAGAGTTTAATTCAAATTGA
CTTTTCATCCACTTTTTCTACAGTTGATTTTCATGGCTGAGTTGACGGTA
CCTTTGGTATTGTTCCTGATTCTGGTGATCATTCGACAACATCGTCCACC
TGATGAAGCCAGCATCGGTAGGTGCTTTCACAAATTAATGCTGTTCTTAA
AGGCTGGTCTCCACTTTCGCACGACATATGCGAAAACGTTTTTGTAAGGT
CAATGGTCGGTTGAATAATGAAGCAATTCCATTGGTCGAAATTGACGTAA
CGGAAGATAAAAGTAGAACTTCCTTCAACTTTTTTTTTGTTCGTGCGAAA
CTTTTTTATGACGTAATCTTGTCTTCAGGCAAAAAAGGTTAAGAAAAAAC
TGTCGCCCATTTCGCGTGAAAGTGGAGACCGGCCTTAAGATATTGTTTAA
ATTTTGAGAGGGTTATATTCTTCTATACAACAGAAATCATAATTTAAAGC
TTTTACTCACTGGAAAGGCTAACTGCGCACAAATTTTCCGTGGAAAAATT
TCCAGTTTTGAAGTCGACTTCCACCATGTTGTTTTTATTTTACCTCCTAT
TTTCGAACGTTTGAATTTCAAAACATTCGAATCCCGCAGATGGTAAAGCA
GAATAGAAGGAAATGGCAGACTTGCCAGCTCAAAAGCTGGAAACATTTCT
GTTATTATAGGAAGTCCAATGCAGTTGTTAGAAATCAGTGTTCTATACCT
TTTTGGGGATGTCTTTGGGGATAGTATTTGTACACCTTCAATCTTTTATT
CCCTTTGTGTACTAAAGAACTATGAAATTATCCGAGAAATTATCTATAGG
TTTTCCATGAGACCTCTTGTTAAAATCAATGTCTTTTTTTTTCAGCTTCC
TGGGCACCCCTTGCTATGCCATCCGCTGGTATTGTCCCTCTTCTTCAATC
CTTTTGCCCACATAGAGGGTATAAGAAGAATGGCTACTTGGCTTTTCCCG
GATCAAAGTTCGTAATTTTTTTCTTGGAAGATTCTTGGAATCTTTGAAGT
TAGCATATATAAAGATTCTGCTAAATTTTTAGGTATTTTATGTCCCGATT
CTTTGTAAATTAGTCGACACCAACATTTATTTGATATGCATTATGTCACC
TTGATAGCTTTATGCACCTGTTGAAATGCGCTTCACTCGTTAGATATCAC
TATGTTAGATATTTGGATATGTTAGCGCAGGCTTTTGTTCATCAGTCCCT
TGTTAGTCCCCCCACTATCATCCGAATGACTGTTAATGACTTTTAAGTGA
AAAAATTTTCTCCAGAAATGTTTGAAACTCAACTATGAAACTTTATCTGC
AGGATTGAACTGGTTATCAAAGATGTAGCTGACTTAGCAAATACACCTTT
ATTTGACGCCATTCAAGGTTTAAAGAAATTCGAAGAGGATTTTGAAGATT
TTCAAAAGAACCCTTCATTTTCCAATATTCGGAATATTAAAGGTTTGTAC
CCTATATATATGATCTTCCAGTAGTAAAATAGATGAAGAGTATACAAGCG
GTCCGTCATTATCTAACCTACTATTTTGTATGTCATAACAAGGGCCAACT
CTTTTTCCCAATTTCGGCAAGTAAATGCGTTCCACTAGCAATTCTTTTTC
CTTGGTTAATGAGTGAATTCTTTTTGAACGGATTTTCGAACTTTCCATAT
TCCGAACAGAGTCATGTTCCCTATGGTAAACTCTATCTTCTTTCTTCCTT
TTCAGATATCAAGTTTTCTGATTTATTGAAAAAAGATTCAGATTTTGTTG
AGTACCTCGAAAGAAATCTTTCTATGTCTTCACAAATGGCTGAAGGATTT
ATGAATGCTACCTTCAATGGCTCTGAGGTAAGAATTAAGTCTAGTCTTTT
GAATATTATTTCGACCGTTAGATGGAAGTACAGAGGACTCTCCATAACCT
TCAATACTCTCTAAAAAACTCAAAACGAAAAATTCAAAACTCTCTATTAG
TCGAACAAATTTTCGTATCCTCTAAGTGTTCACACAGCAGAAGAATTGGC
TTTGGCAATTTGTTTTGCTTTCCTAATGATTTTTTATTCATTTTGAACAA
AATATTTTCTGATCTTTCACCAGATTTATGTCTTTTTGTTTAGATTTCAT
CAATATTACTGGAGAGAAAGGACGGCTTTGTAAAACAATATCTTCAACAA
ATCGTATCTAAAAAAGCTCCAACTTTCTCCAACCTCAGACGTCTTCAACA
AAGCACTATTCTACAGACCATGTTCGATCCGACTTCGTTACTTTTTGGCC
CGACATGGCTCGGCGCCTTAGCGTCAGTTGCCAATGTCCCTGGTCTTTCA
ATTGGTAAACCAAACTTGAATTCATTGGAGGAAGTCTTCAAAGACATTTT
TTTAAACCAATCAGAAATCAGATATTTATCATGTGATCAAGAGGTCTTCA
ATCAACTGATCACTTTGTCCACTGAATATAAAAACCGCCATGAAACACAC
GTGGAAAAGGTAAAAGCCTCAAAAAGATTCTATTTTTATATTTACTGGGA
TTGACATGCTAGATAATGGAAACTTTTTTCAATTCCATACACGGTTAGAC
AATTTTCCCTGAGCAGATGATTCCATCACTTTCCTGTTAATGACCTAACT
AACAAACATCCGAAATCTACAGTCATTTCTTCAATCTTTTTATAAAAATT
GAATTTTATTTTGTATTCGTGTTTTTAGGACCAACTGCAAGAATTTCTTT
GTAATTTGACGAATGCTCAAGATGCAAGTTTGGCTGGCGAACTTCAACGA
GCCATCAATTGGACTGCTGTTCTTACACAGGTAATGTGTTTACTTTTACC
CTAGTTTCGAACACGTCAAAGCCATAGAAAAATACGCCTACTAAATAACT
GTTTTGAAATTTGTTCGATTTTCTTCTTTCTAGTTTCACACAGATGGTCC
TTCGATTGAGATGTACGAAAAGAAAGCAAAAGTTATCCGAGACGATGTGA
GTCGAATTTAGGTTCAGAATTTTTTAAAGCAATAAATATTACAAATTAGT
TTCATTATATCCTTATAATATTATTACTCAATTTAGAAGTAGAAGAGATT
CTCAGACCTTTGAATTCTTTATTGAAGCCTCTGCAACAAACCCCCTAAAC
TGGTCAAATTCAACTTTCCTAATCTCTTTCAAAATGACGAAATTTCGTAA
TCTATAACAAAAATATGTCACATTTTAGAAATTTTGGCCTTAAATAATTT
TCTTAAATATTGATCCTCTAGATGATGAAATTCCTTGAACTTGAAGATGC
ATTTGGCAAACTGATCAAACTTTCGAAAGATTTGAATGTGAATGTGACGG
AGATATCTAATGCATTGAATAATTCACAATCTGAAGAATTCACACAGAAC
GCTATAAAGCTATGGAAAATACTTTCACCTATTCTTTGTGGCGAGAAGAA
CAGTGCTTGGGAGGGACGCTCCATTGAACAAAGCATGATGGACTTCATGG
CTGGTAAAAA

Coding sequence (CDS) from alignment at sc0000006_pilon:1531452..1535311-

>MSTRG.1301.3.p1 ID=MSTRG.1301.3.p1|Name=MSTRG.1301.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4110bp|location=Sequence derived from alignment at sc0000006_pilon:1531452..1535311- (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAAATTCCTTGAACTTGAAGATGCATTTGGCAAACTGATCAAACT
TTCGAAAGATTTGAATGTGAATGTGACGGAGATATCTAATGCATTGAATA
ATTCACAATCTGAAGAATTCACACAGAACGCTATAAAGCTATGGAAAATA
CTTTCACCTATTCTTTGTGGCGAGAAGAACAGTGCTTGGGAGGGACGCTC
CATTGAACAAAGCATGATGGACTTCATGGCTGGTAAATTTCACACAGATG
GTCCTTCGATTGAGATGTACGAAAAGAAAGCAAAAGTTATCCGAGACGAT
GACCAACTGCAAGAATTTCTTTGTAATTTGACGAATGCTCAAGATGCAAG
TTTGGCTGGCGAACTTCAACGAGCCATCAATTGGACTGCTGTTCTTACAC
AGATTTCATCAATATTACTGGAGAGAAAGGACGGCTTTGTAAAACAATAT
CTTCAACAAATCGTATCTAAAAAAGCTCCAACTTTCTCCAACCTCAGACG
TCTTCAACAAAGCACTATTCTACAGACCATGTTCGATCCGACTTCGTTAC
TTTTTGGCCCGACATGGCTCGGCGCCTTAGCGTCAGTTGCCAATGTCCCT
GGTCTTTCAATTGGTAAACCAAACTTGAATTCATTGGAGGAAGTCTTCAA
AGACATTTTTTTAAACCAATCAGAAATCAGATATTTATCATGTGATCAAG
AGGTCTTCAATCAACTGATCACTTTGTCCACTGAATATAAAAACCGCCAT
GAAACACACGTGGAAAAGATGTCTTCACAAATGGCTGAAGGATTTATGAA
TGCTACCTTCAATGGCTCTGAGATGATGAAATTCCTTGAACTTGAAGATG
CATTTGGCAAACTGATCAAACTTTCGAAAGATTTGAATGTGAATGTGACG
GAGATATCTAATGCATTGAATAATTCACAATCTGAAGAATTCACACAGAA
CGCTATAAAGCTATGGAAAATACTTTCACCTATTCTTTGTGGCGAGAAGA
ACAGTGCTTGGGAGGGACGCTCCATTGAACAAAGCATGATGGACTTCATG
GCTGGTAAATTTCACACAGATGGTCCTTCGATTGAGATGTACGAAAAGAA
AGCAAAAGTTATCCGAGACGATGACCAACTGCAAGAATTTCTTTGTAATT
TGACGAATGCTCAAGATGCAAGTTTGGCTGGCGAACTTCAACGAGCCATC
AATTGGACTGCTGTTCTTACACAGATTTCATCAATATTACTGGAGAGAAA
GGACGGCTTTGTAAAACAATATCTTCAACAAATCGTATCTAAAAAAGCTC
CAACTTTCTCCAACCTCAGACGTCTTCAACAAAGCACTATTCTACAGACC
ATGTTCGATCCGACTTCGTTACTTTTTGGCCCGACATGGCTCGGCGCCTT
AGCGTCAGTTGCCAATGTCCCTGGTCTTTCAATTGGTAAACCAAACTTGA
ATTCATTGGAGGAAGTCTTCAAAGACATTTTTTTAAACCAATCAGAAATC
AGATATTTATCATGTGATCAAGAGGTCTTCAATCAACTGATCACTTTGTC
CACTGAATATAAAAACCGCCATGAAACACACGTGGAAAAGATGTCTTCAC
AAATGGCTGAAGGATTTATGAATGCTACCTTCAATGGCTCTGAGATGATG
AAATTCCTTGAACTTGAAGATGCATTTGGCAAACTGATCAAACTTTCGAA
AGATTTGAATGTGAATGTGACGGAGATATCTAATGCATTGAATAATTCAC
AATCTGAAGAATTCACACAGAACGCTATAAAGCTATGGAAAATACTTTCA
CCTATTCTTTGTGGCGAGAAGAACAGTGCTTGGGAGGGACGCTCCATTGA
ACAAAGCATGATGGACTTCATGGCTGGTAAATTTCACACAGATGGTCCTT
CGATTGAGATGTACGAAAAGAAAGCAAAAGTTATCCGAGACGATGACCAA
CTGCAAGAATTTCTTTGTAATTTGACGAATGCTCAAGATGCAAGTTTGGC
TGGCGAACTTCAACGAGCCATCAATTGGACTGCTGTTCTTACACAGATTT
CATCAATATTACTGGAGAGAAAGGACGGCTTTGTAAAACAATATCTTCAA
CAAATCGTATCTAAAAAAGCTCCAACTTTCTCCAACCTCAGACGTCTTCA
ACAAAGCACTATTCTACAGACCATGTTCGATCCGACTTCGTTACTTTTTG
GCCCGACATGGCTCGGCGCCTTAGCGTCAGTTGCCAATGTCCCTGGTCTT
TCAATTGGTAAACCAAACTTGAATTCATTGGAGGAAGTCTTCAAAGACAT
TTTTTTAAACCAATCAGAAATCAGATATTTATCATGTGATCAAGAGGTCT
TCAATCAACTGATCACTTTGTCCACTGAATATAAAAACCGCCATGAAACA
CACGTGGAAAAGATGTCTTCACAAATGGCTGAAGGATTTATGAATGCTAC
CTTCAATGGCTCTGAGATGATGAAATTCCTTGAACTTGAAGATGCATTTG
GCAAACTGATCAAACTTTCGAAAGATTTGAATGTGAATGTGACGGAGATA
TCTAATGCATTGAATAATTCACAATCTGAAGAATTCACACAGAACGCTAT
AAAGCTATGGAAAATACTTTCACCTATTCTTTGTGGCGAGAAGAACAGTG
CTTGGGAGGGACGCTCCATTGAACAAAGCATGATGGACTTCATGGCTGGT
AAATTTCACACAGATGGTCCTTCGATTGAGATGTACGAAAAGAAAGCAAA
AGTTATCCGAGACGATGACCAACTGCAAGAATTTCTTTGTAATTTGACGA
ATGCTCAAGATGCAAGTTTGGCTGGCGAACTTCAACGAGCCATCAATTGG
ACTGCTGTTCTTACACAGATTTCATCAATATTACTGGAGAGAAAGGACGG
CTTTGTAAAACAATATCTTCAACAAATCGTATCTAAAAAAGCTCCAACTT
TCTCCAACCTCAGACGTCTTCAACAAAGCACTATTCTACAGACCATGTTC
GATCCGACTTCGTTACTTTTTGGCCCGACATGGCTCGGCGCCTTAGCGTC
AGTTGCCAATGTCCCTGGTCTTTCAATTGGTAAACCAAACTTGAATTCAT
TGGAGGAAGTCTTCAAAGACATTTTTTTAAACCAATCAGAAATCAGATAT
TTATCATGTGATCAAGAGGTCTTCAATCAACTGATCACTTTGTCCACTGA
ATATAAAAACCGCCATGAAACACACGTGGAAAAGATGTCTTCACAAATGG
CTGAAGGATTTATGAATGCTACCTTCAATGGCTCTGAGATGATGAAATTC
CTTGAACTTGAAGATGCATTTGGCAAACTGATCAAACTTTCGAAAGATTT
GAATGTGAATGTGACGGAGATATCTAATGCATTGAATAATTCACAATCTG
AAGAATTCACACAGAACGCTATAAAGCTATGGAAAATACTTTCACCTATT
CTTTGTGGCGAGAAGAACAGTGCTTGGGAGGGACGCTCCATTGAACAAAG
CATGATGGACTTCATGGCTGGTAAATTTCACACAGATGGTCCTTCGATTG
AGATGTACGAAAAGAAAGCAAAAGTTATCCGAGACGATGACCAACTGCAA
GAATTTCTTTGTAATTTGACGAATGCTCAAGATGCAAGTTTGGCTGGCGA
ACTTCAACGAGCCATCAATTGGACTGCTGTTCTTACACAGATTTCATCAA
TATTACTGGAGAGAAAGGACGGCTTTGTAAAACAATATCTTCAACAAATC
GTATCTAAAAAAGCTCCAACTTTCTCCAACCTCAGACGTCTTCAACAAAG
CACTATTCTACAGACCATGTTCGATCCGACTTCGTTACTTTTTGGCCCGA
CATGGCTCGGCGCCTTAGCGTCAGTTGCCAATGTCCCTGGTCTTTCAATT
GGTAAACCAAACTTGAATTCATTGGAGGAAGTCTTCAAAGACATTTTTTT
AAACCAATCAGAAATCAGATATTTATCATGTGATCAAGAGGTCTTCAATC
AACTGATCACTTTGTCCACTGAATATAAAAACCGCCATGAAACACACGTG
GAAAAGATGTCTTCACAAATGGCTGAAGGATTTATGAATGCTACCTTCAA
TGGCTCTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1301MSTRG.1301Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1301.3.p1.exon9MSTRG.1301.3.p1.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon8MSTRG.1301.3.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon7MSTRG.1301.3.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon6MSTRG.1301.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon5MSTRG.1301.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon4MSTRG.1301.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon3MSTRG.1301.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon2MSTRG.1301.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1301.3.p1.exon1MSTRG.1301.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1301.3.p1MSTRG.1301.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1531452..1535311 -