MSTRG.13001.1.p1 (mRNA) -

Overview


Name	MSTRG.13001.1.p1
Unique Name	MSTRG.13001.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:167108..169116-
coding sequence from alignment at sc0000101_pilon:167108..169116-

mRNA from alignment at sc0000101_pilon:167108..169116-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.13001.1.p1 ID=MSTRG.13001.1.p1|Name=MSTRG.13001.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2009bp|location=Sequence derived from alignment at sc0000101_pilon:167108..169116- (Clytia hemisphaerica_ch_hm2_pilon)
AAAGAAATGAAAAAGATGCATCTTTCCTTTTTCTTTTTTCCTTGATGAAA
AAATCTTTGGCTTTTTCAGATTTTATTTTTTTACGCTAATAACAGAAAAA
GGACAGAAATGATTGGATTTCTCATTTTTGCTTTGGATCCTGACCGACCT
TTTTCCTTCGACAGAAATTTCTTTGCTGACGTCGCTTTGAAAGAATATAA
ATGCTAGGAATGACAAAGGCTGACACGGAATCAAACTTCTGTAAACGTTA
CAATGAATAGCAAAATATGCCTAGGTAATTAAATATTTATTCATTATTTT
TCCTGTTTCGTGTGGAGCAGATCCCCGGGGATGCACTTTAAAACTTGCCC
CGGTTTAGAAGCAAGTTATAGGGATTTGCGATAGTCGAAAATTGACTCCC
TAAAAGAATTAAAATTCTTGAACTTTCGACCACAATTGGATAATTTCGGG
AAGATATTCTCCTAAAGGTAGTAAAAACGTCAAAAATTAAAAACTTTAAA
TTCAGTTAACTGAACACACCCGTTAACTAGCAAACCTAGTTGAAATCCCC
CCTCTCTACTCCGGCTGGAGATCATAACTTTGATCCGGGATGGTGCCGGG
TCAAAAGGCGTGCAGCCGGAATACTAAAGGAAAAGAGTACGTTCGAAAAT
CTTTAGAGAAACAGAAGCGGTACAGATATTAAAATGAATACAATTTTCAC
GTCAAAAAGTTTTGCAGAAAAAGTACGAAAAGTGATGAAACAAGTGGCCG
TGTCTTGAGTCGTTTACTTTTTGCACAAGTCGTTACTTGAGCAAGCATCA
GAGTATGGGAACATCAATTCAGAAGAATTCAACTTTACCTAAGTGTTTCC
GCATACAACAGTGAAATAAAATCCACGTGAAAAGGACCTAAATCTTTACA
TGTTGGCTTTGAGGACTAGAAGTGAAGAATTACTTCAACTTTAAGCTAAA
GCACATGCTTATCCAGTATCTAACTTTTCTATTGCTTTTAATTTTTGCAG
CTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGTGTGAGAATTGTTTT
CGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGATGACATCATTCAACA
AATCGAAAATCAAAATCGAAACAGTGGTGGGGATGAAAGGCCTCAAAAGG
AAAAATGGACGGAATCAGATATAAGAGAGTTGATCTCCCTTTGGGGTTCA
AAGGATATTCTTGTGAACCCTAAACACGCGTCCTATTGTAATACGCGCGA
GCGAACGAAAGCAGTCGAGGAGATTAAAGATGATTTGAGTGAGCGAGGCA
TTTTATTCACTGTTAAACAAGTCAACGATAAAATGATTAACTTGCGAACA
TACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCCAAACGTAACGCAGC
AGGACCGGAAGATATCTTTGTTAGCCGTTGGAAATTCTTTGACAGTTTGA
GATTTTTATCAGATACCATCATCTCCAGATCGACTCTTGATCTTTCAAGG
GTCGATTCTGGAAGTGAAAATGGCTCCACATTATCACCTACGGGCGTTGA
ATTATCGTCCGCCAAAACACCCTATCAAAGAAAACGAAAATGTTTGAATT
CTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTTTTATGAGTGAACAC
ACGCATCATCAAAATATTAGTCCAGAATGTGTCCGAGATTCAGAAAGTGT
CCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGATGAAGTTTTTGGAG
AATTAATAACATCTATGATGAGGGATATCCCAGAAAGTCACGAAAAGGCT
TTAATGAAACTTGAAATTCAACACAAGATAATCACAATGCAATACAAAAT
TACGTCACCTTCATCCAAAAAGTTTTGTAAATAATCTGCTGATTCTGCAC
TTTTCCTTTTTAGGGTTATCTTTGTGTTACAAGTGCGTTTTACTGATTTT
GTACATATGTTATATAAACGTCTAAAGAGAAAATATACATTAATGTCACT
AATACTGAA

Coding sequence (CDS) from alignment at sc0000101_pilon:167108..169116-

>MSTRG.13001.1.p1 ID=MSTRG.13001.1.p1|Name=MSTRG.13001.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000101_pilon:167108..169116- (Clytia hemisphaerica_ch_hm2_pilon)
CTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGTGTGAGAATTGTTTT
CGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGATGACATCATTCAACA
AATCGAAAATCAAAATCGAAACAGTGGTGGGGATGAAAGGCCTCAAAAGG
AAAAATGGACGGAATCAGATATAAGAGAGTTGATCTCCCTTTGGGGTTCA
AAGGATATTCTTGTGAACCCTAAACACGCGTCCTATTGTAATACGCGCGA
GCGAACGAAAGCAGTCGAGGAGATTAAAGATGATTTGAGTGAGCGAGGCA
TTTTATTCACTGTTAAACAAGTCAACGATAAAATGATTAACTTGCGAACA
TACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCCAAACGTAACGCAGC
AGGACCGGAAGATATCTTTGTTAGCCGTTGGAAATTCTTTGACAGTTTGA
GATTTTTATCAGATACCATCATCTCCAGATCGACTCTTGATCTTTCAAGG
GTCGATTCTGGAAGTGAAAATGGCTCCACATTATCACCTACGGGCGTTGA
ATTATCGTCCGCCAAAACACCCTATCAAAGAAAACGAAAATGTTTGAATT
CTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTTTTATGAGTGAACAC
ACGCATCATCAAAATATTAGTCCAGAATGTGTCCGAGATTCAGAAAGTGT
CCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGATGAAGTTTTTGGAG
AATTAATAACATCTATGATGAGGGATATCCCAGAAAGTCACGAAAAGGCT
TTAATGAAACTTGAAATTCAACACAAGATAATCACAATGCAATACAAAAT
TACGTCACCTTCATCCAAAAAGTTTTGTAAATAAATGAATAGCAAAATAT
GCCTAGCTAACGGTGACAGCAGTAGAGATGAATTTTGCGAGTGTGAGAAT
TGTTTTCGTGCGAATGGAGGAACTTTCGTGTATGGGTCAGATGACATCAT
TCAACAAATCGAAAATCAAAATCGAAACAGTGGTGGGGATGAAAGGCCTC
AAAAGGAAAAATGGACGGAATCAGATATAAGAGAGTTGATCTCCCTTTGG
GGTTCAAAGGATATTCTTGTGAACCCTAAACACGCGTCCTATTGTAATAC
GCGCGAGCGAACGAAAGCAGTCGAGGAGATTAAAGATGATTTGAGTGAGC
GAGGCATTTTATTCACTGTTAAACAAGTCAACGATAAAATGATTAACTTG
CGAACATACTACGGTAGCCAGAGACGTCAGATAGAAGCTTCCAAACGTAA
CGCAGCAGGACCGGAAGATATCTTTGTTAGCCGTTGGAAATTCTTTGACA
GTTTGAGATTTTTATCAGATACCATCATCTCCAGATCGACTCTTGATCTT
TCAAGGGTCGATTCTGGAAGTGAAAATGGCTCCACATTATCACCTACGGG
CGTTGAATTATCGTCCGCCAAAACACCCTATCAAAGAAAACGAAAATGTT
TGAATTCTTTGAGTGACTATAAAGAAAGTACGCCAAATCCTTTTATGAGT
GAACACACGCATCATCAAAATATTAGTCCAGAATGTGTCCGAGATTCAGA
AAGTGTCCGCGAAAAAGCTGAAAACAGTCATAAATCACAAGATGAAGTTT
TTGGAGAATTAATAACATCTATGATGAGGGATATCCCAGAAAGTCACGAA
AAGGCTTTAATGAAACTTGAAATTCAACACAAGATAATCACAATGCAATA
CAAAATTACGTCACCTTCATCCAAAAAGTTTTGTAAATAAATGAATAGCA
AAATATGCCTAG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.13001	MSTRG.13001	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13001.1.p1.exon2	MSTRG.13001.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13001.1.p1.exon1	MSTRG.13001.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13001.1.p1	MSTRG.13001.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000101_pilon	genome	sc0000101_pilon:167108..169116 -

You are here

MSTRG.13001.1.p1 (mRNA) -