MSTRG.13000.1.p1 (mRNA) -

Overview
NameMSTRG.13000.1.p1
Unique NameMSTRG.13000.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:158517..160850-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13000.1.p1 ID=MSTRG.13000.1.p1|Name=MSTRG.13000.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2334bp|location=Sequence derived from alignment at sc0000101_pilon:158517..160850- (Clytia hemisphaerica_ch_hm2_pilon)
TTCTGCAAGCGCTCGATAGTTTTTACTTAACAAGAAACATAGAGGAAGAA
GAAGCAAGCAAGTTGGTGGCTGAACTCAGAGTAAATAATTTTGCTACTTT
GGAGTATCAATTCAAAATGATGAGAGGGTTTTTAATGATCCTGCTCCTTA
TGAGTTTGCAGCAGATATGTACTTTTGGTTTTGACACAGCACCAAGTAAG
TTAGCCCGGAAACCTGGCGATGAAAACCCGTTTGTTGAATCCGATCTCGC
TTCAGCAACGGGTTCGGTCGCCAGGGATGACCTAGACTAGAGTCTACTTC
TGGCTGAACTTTGCTTTTTGATAATTTTTTATGACGCTGAGTCCAGTGAA
GTAGACTAGGAGCGTTTGGCAAGGTCGCCATTTTGAAAGAGAATGTTTTA
AATCCAAATAACAAAAAACTACTTAGAGTTGAACGATGTAATCAAAAATG
AGAGACAAACATCAATAACAGATTTGCAATGCCCTATTCTCAAATAAAAA
CATTGCTTCGTACTGTTTTTACCTTCCAAAAACAACAAAAATCTGGCGGA
CTGTTTTACAGTCCGCCTAAGCAAAAGCATATTACCATATACTACTGGGC
CACTTATCAGCGCCAAAAAGACCATAAAAAAGCTCTAAGTGGACCCCGGG
CTAGGGATGACCTAGCACAATAAACTGTGCTCCTATTTTGATTAGCATCA
AAATTTCGAGAAACTCTTTCTGCTACTGCCTGCAATATATTCAAATAGAG
CAACTTATTTGTGGCACACCTGGTAGAAATTATTTTACGCGTAATGACTA
GACGAAAGTCTATAAAACTTCATCGAGATTGCTAAAAGTGCGACTAGAAA
TTCCATTTTATAAGCGTGGAAAAGACTTACTCTATGGCAATATTTTATTT
TACAATTGACACCATACTAGCCCAGAAAAAAGTACATCCTAGACTAAGTC
TATCTCAATTTATCTACACTAGTGAATTCTTATACTTTTTAATTAGCGAA
AGTATAACGATAGGATTTCGCGGTGGTTGTCGATGCGGAAAAAACCCGGA
GGGGGCACTCGATTTCGAAACAACGGTATGTGCCGCGCAAAATCTGCTTT
TCAAAATTGTACCCTTACAGTGCAGTTCAATATGGCTGAAAAGCTACCCT
TTCAATGCATTTTCTTATGATTTACCCAACCCTTATAGTGCACTATACTT
CTCAGCTGTAAATCTGCGGGAAAGAAGAAGCTTGGGAAATTTTCTGTTTC
AAAGAAAAACTGAGAAAATCATTCTTGTCAGCTGTAATTATCAGACAATA
AAAACTTTTTCAAACAAACGAGAAGTAAAAGCCTTTCTTTTTTTATTTTG
AAATTGTTTTAAAATTTGACCCTTGCATTACAATCTCACAGAAACACACC
CTTGACTTACAGTGCATTTTGGGATGCTGAAAATGTAGGCCAGATCATTT
GAGTGCCCCCTCCCCCACGGGGGGAAACTTAGAAAACGAAGGCAGTTAAA
ACTTCTAGAACATTCTGGAGGTTTGTGAAATATGGATTCACTCGCTGAGA
TAAAATTTCCAGTCCACCCGTGCTAAGTAGGCGTAACCAAGTATTCGTAA
ACATTGCTCGTCTATTTTAGTAGTGGCAGATTTCAGCATGCTGTCAGACT
TGCTTTGATTGTTTGTATTTTTATTATGTTTTTGGTGTTTTAAGAGTATT
AAAGAGTTTTATACTTGTTTTGGCATATACTATTTTATGTTTGTGTAGTT
AGTAAACGAGTCTGCTAAGTTGCATGCAACGCGTGCCAGCGTGCTATGCG
TGCAAGCGTACCCTCGTGCTTTGGCGTACCAACGTGCCAAAAAGGTTATG
CTTTTGCTTTCATATTCTAGCCATGGATGTAGTAAGTAACTTTAATTTAT
TTTTTTTACTCAATCGTTAAAAGAGATTATTTAAACAAGACAAAACAAGC
AGGATAAAGGTTTATGTTTTTCTTAAGGTTTACGGGTTTTTATGGTTTAT
GACTCAGGCAGACATAATCATATGTTCTTCTCTTCAACATTAGCAACAAC
TACTGCCGCTCCAACAACAACTGCTGCCTATCCAACAACAACTCTTGCCG
CTCCACCAACAACTGTTGCCGCTCCAACAACAACTACTGCCGCTCCACCA
ACAACTACTGCCTATCCAACAACAACTACTGCCGCTCCACCAACAACTGT
TGCCGCTCCAACAACAACTACTGCCGCTCCACCAACAACTGCTGCCTATC
CAACAACAACTGATGCCACTCCAACAACAACTGCTGCCTATCCAACAACA
ACTACTGCCGCTCCACCAACAACTACTGCCTATC

Coding sequence (CDS) from alignment at sc0000101_pilon:158517..160850-

>MSTRG.13000.1.p1 ID=MSTRG.13000.1.p1|Name=MSTRG.13000.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000101_pilon:158517..160850- (Clytia hemisphaerica_ch_hm2_pilon)
CAACAACTACTGCCGCTCCAACAACAACTGCTGCCTATCCAACAACAACT
CTTGCCGCTCCACCAACAACTGTTGCCGCTCCAACAACAACTACTGCCGC
TCCACCAACAACTACTGCCTATCCAACAACAACTACTGCCGCTCCACCAA
CAACTGTTGCCGCTCCAACAACAACTACTGCCGCTCCACCAACAACTGCT
GCCTATCCAACAACAACTGATGCCACTCCAACAACAACTGCTGCCTATCC
AACAACAACTACTGCCGCTCCACCAACAACTACTGCCTATCTGCAAGCGC
TCGATAGTTTTTACTTAACAAGAAACATAGAGGAAGAAGAAGCAAGCAAG
TTGGTGGCTGAACTCAGAGTAAATAATTTTGCTACTTTGGAGTATCAATT
CAAAATGATGAGAGGGTTTTTAATGATCCTGCTCCTTATGAGTTTGCAGC
AGATATGTACTTTTGGTTTTGACACAGCACCAACAACAACTACTGCCGCT
CCAACAACAACTGCTGCCTATCCAACAACAACTCTTGCCGCTCCACCAAC
AACTGTTGCCGCTCCAACAACAACTACTGCCGCTCCACCAACAACTACTG
CCTATCCAACAACAACTACTGCCGCTCCACCAACAACTGTTGCCGCTCCA
ACAACAACTACTGCCGCTCCACCAACAACTGCTGCCTATCCAACAACAAC
TGATGCCACTCCAACAACAACTGCTGCCTATCCAACAACAACTACTGCCG
CTCCACCAACAACTACTGCCTATCTGCAAGCGCTCGATAGTTTTTACTTA
ACAAGAAACATAGAGGAAGAAGAAGCAAGCAAGTTGGTGGCTGAACTCAG
AGTAAATAATTTTGCTACTTTGGAGTATCAATTCAAAATGATGAGAGGGT
TTTTAATGATCCTGCTCCTTATGAGTTTGCAGCAGATATGTACTTTTGGT
TTTGACACAGCACCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13000MSTRG.13000Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13000.1.p1.exon2MSTRG.13000.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13000.1.p1.exon1MSTRG.13000.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13000.1.p1MSTRG.13000.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:158517..160850 -