MSTRG.12991.36.p1 (mRNA) -

Overview
NameMSTRG.12991.36.p1
Unique NameMSTRG.12991.36.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:53114..57060+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12991.36.p1 ID=MSTRG.12991.36.p1|Name=MSTRG.12991.36.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3947bp|location=Sequence derived from alignment at sc0000101_pilon:53114..57060+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTAACGGTGGTTGGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGT
CATGTGGAGGCGGTAAAACAACAAGGTCAAGAAAATGCGACAACCCAGCT
CCTGCTCATGGTGGGAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGA
ATGCAACACTTTTGAATGCCCAAAGAAACCAGGTATATTTTTCTTGCTAA
GAATGATTTTGTAAAACGCACGTTCGTAAACTCGACTATACCTATTTGGA
ACAATCCCCCTAAtgcaataaaacaaaccaaatgtctccttaatttCAAA
TCAGTTTTGATACGTCACATTTTCTGTCAGAACATGTTGTTACTAGTtct
tgttcttttctttttattcttgcTTAATTgccgtattactttgaataaac
gtcCCGGGCGTTATGATCAAGAATTCGTAAATATAGAAATAACAAAATAG
CAATTCtaaaaatgtgatggagcccaattttcgaaagtaAATATTATTTC
TTATCACCAGAttaagaaatgtcccaaaaaaagagGTTTTCCAGGAATtc
ctcgagattttctcattagctTTAATTCTAAaaggtttttctaattttga
attttaaatgtgGTTTTCTATTGATTAGGGCCATAAATATCTTTATCCTC
TCTTAAGTAAATCATTACTTCGATAATTGAAAGTAAAAAacaaattcatt
ttcttttctagtTAACGGTGGTTGGGGAGAATGGACGAAGCCAACTCCTT
GCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGAAAATGCGAC
AACCCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTCTGGTACCGA
AACCCAAAAATGCAATACTAATGAATGCCCAAAGCAAGCAGGTATATTAT
CTAAGTTCGGCTGTTATATTTTTACTTAAACTGTTTGATTATTAGATGTG
ATTGTATTTTGTAGAATATCAATGAAGCTTCATTCAACTTTATCACGTCC
TACTGgctaatttattttgaaaatatcgcATCCATAGGTAACAAACCGAA
AAACTGTCTGATGAAATACCATTAgttaaattattgaaaatttatcaaca
tagtttttaattttttctagttAACGGTGGTTGGGGAGAATGGACGAAAC
CAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAAGGTCAAGA
AAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGATTGTGAAGGCTC
CGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCCAAAGAAACCAG
GTATATTTTTCTTGCTAAGAATGATTTTGTAAAACGCATGTTCGTAAACT
CGACTATACCTATTTGGAACAATCCCCCTAATGcaataaaccaaaacaaa
tatCTCCTTAATTTCAAATCAGTTTTGAAACGTCACATTTTCTGTCAGAA
CATGTTGTTACTAGTTCTTGTCCTGTTCTTTTTATTCTTGCTTCATTgac
gtattactttgaataaacgccccgggcgttaTGATCAAGAATTCGTAAGT
acagaaacaacaaaatagcaattcccaaaatgtgatggagcccacTTCTC
GACagtaaatattattttttatcacCAGATTAAGAAATGCCCCaaaaaaa
GAGGTTTTCCAGGAATTCCTCGAGATTATCTCATCAGCTTTAATTCTAaa
ggtttttctaattttgcaTTTAAAATGTGGTTTTTGCCAcagcaggaagc
ctaaagcttccgaggatggcattcatagcttcacgcataaggaagttggg
caaacatctcataattttgcgcacgtttttcagtattttagttccgggtA
ATTGGTGAaccggtaacattcttagcttgactgtatttctattattttat
tatcattaaaaacacttttccggatttttttttatctgattatccatttt
caaagctctatatgtctttttttattacctcagggagtcgaatttaggga
aattccttttttgttgggaaattccctatttacaccacaagtagttatta
accgcactgagcaacgcaaattagaaatttttatcctttcaaaaatttgt
cgtttgactattacagtaaaatggcagtttagtacagtagcgtttagtat
gatTAAACAAACCATaatataccattattttggtaataaaagagatgaca
aaaaaaaaacagataaataactttaCCTTACctctataagaagatatcta
tgagatggacacaaattgctaacatttgtagactaaattttgcttcagat
gagatgccattctaacagaagtaacGGCTATCTGTAACTCtgtaacattt
ctttccaaattcaacaatttatttgatcgttcttctgcgatggcatttta
atgaaaattatggctagtcTATTGATTAGTGCCATAAAAATATCActtat
ttcaaatgaaataccGCGTAATATCATCGACTAATTATTGATTGATGtca
gttaattttttttctttatcctcTCTTAAGTAAATCATTACTTTAATTAT
TGAAAGTAAAAAACAAATTCCTTTTCTTTTCTAGTTAATGGTGGTTGGGG
AGAATGGACGAAGCCAACTCCTTGCAGCAAGTCATGTGGAGGTGGAACAA
CAACAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTAATGGAGGGTGG
AATTGCGAAGGCTCTGGTACCGAAACCCAAAAATGCAACAGTAATGAATG
CCCAAAGCAACCAGGTATATTATCTAAGTTCGGCTGTTATATTTTTACTT
AAACTGTTTATTAGATGTGATTGTATTTTGTAGAATATCAATGAAGCTTC
ATTCAACTTTATCACGTCCTACTTgctaatttattttgaaaatatcgcAT
CCATAGGTACCGAACCGAAAAATTGTCTGATAAAATACCATTAgttaaat
tattgaaaatttatcagcaaagtttttaattttttctagttAACGGTGGT
TGGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGG
TAAAACTACAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTG
GGAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTT
GAATGCCCAAAGAAACCAGGTATATTTTTCTTGCTAAGAATCATTTTGTA
AAACGCACGTTCGTAAACTCGACTATACCTATTTGGAACAATCCCCCTAA
tgcaataaaacaaaccaaatgtctccttaatttCAAATCAGTTTTGAAAC
GTCACATTTTCTGTCAGAACATGTTGTTACTAGTTCTTGTCCTGTTCTTT
TTATTCTTGCTTAATTGCCGTATTActtaataaacgccccgggcgttaTG
ATCAAGAATTTGTAAATatagaaacaacaaaatagcaattcccaaaatgt
gatggagcccacTTTTCGACAGTAAACATTATTTCTTATCACCAGAtcaa
gaaatgtcccaaaaaaagagGTTTTCCAGGAATTCCTCGCGATTTTCTCA
TTAGCTTTAATTCtaaggtttttttaattttgaatttgaaatgtgGTTTT
CTATTGATTAGGGCCATAAAAATAtcacttatttaaaaaaaaaatactgt
gtAATATTATCGGCTAATTATTGATTGATGTCagttaattctttttcttt
atccTCTCTTAAGTAAATCAATACTTTAATTATTGAAAGTAGAAAACAAA
TTCCTTTTCTTTTCTAGTTAACGGTGGTTGGGGAGAATGGACGAAGCCAA
CTCCTTGCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGAAAA
TGTGACAACCCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTCTAA
TACCGAAACCCAAAAATGCAACACTAAGGAATGCCCAAAGCAACCAG

Coding sequence (CDS) from alignment at sc0000101_pilon:53114..57060+

>MSTRG.12991.36.p1 ID=MSTRG.12991.36.p1|Name=MSTRG.12991.36.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000101_pilon:53114..57060+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTAACGGTGGTTGGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGTC
ATGTGGAGGCGGTAAAACAACAAGGTCAAGAAAATGCGACAACCCAGCTC
CTGCTCATGGTGGGAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGAA
TGCAACACTTTTGAATGCCCAAAGAAACCAGttAACGGTGGTTGGGGAGA
ATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACTA
CAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGAT
TGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCC
AAAGAAACCAGTTAACGGTGGTTGGGGAGAATGGACGAAGCCAACTCCTT
GCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGAAAATGTGAC
AACCCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTCTAATACCGA
AACCCAAAAATGCAACACTAAGGAATGCCCAAAGCAACCAGTTAACGGTG
GTTGGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGC
GGTAAAACAACAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGG
TGGGAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTT
TTGAATGCCCAAAGAAACCAGttAACGGTGGTTGGGGAGAATGGACGAAA
CCAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAAGGTCAAG
AAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGATTGTGAAGGCT
CCGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCCAAAGAAACCA
GTTAACGGTGGTTGGGGAGAATGGACGAAGCCAACTCCTTGCAGCAAGTC
ATGTGGAGGTGGAACAACAACAAGGTCAAGAAAATGTGACAACCCAGCTC
CTGCTAATGGAGGGTGGAATTGCGAAGGCTCTAATACCGAAACCCAAAAA
TGCAACACTAAGGAATGCCCAAAGCAACCAGTTAACGGTGGTTGGGGAGA
ATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACAA
CAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGAT
TGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCC
AAAGAAACCAGttAACGGTGGTTGGGGAGAATGGACGAAACCAACTCCTT
GCAGCAAGTCATGTGGAGGCGGTAAAACTACAAGGTCAAGAAAATGCGAC
AACCCAGCTCCTGCTCATGGTGGGAAAGATTGTGAAGGCTCCGATACCGA
AACGAGAGAATGCAACACTTTTGAATGCCCAAAGAAACCAGTTAACGGTG
GTTGGGGAGAATGGACGAAGCCAACTCCTTGCAGCAAGTCATGTGGAGGT
GGAACAACAACAAGGTCAAGAAAATGTGACAACCCAGCTCCTGCTAATGG
AGGGTGGAATTGCGAAGGCTCTAATACCGAAACCCAAAAATGCAACACTA
AGGAATGCCCAAAGCAACCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12991MSTRG.12991Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12991.36.p1.exon1MSTRG.12991.36.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12991.36.p1.exon2MSTRG.12991.36.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12991.36.p1.exon3MSTRG.12991.36.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12991.36.p1MSTRG.12991.36.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:53114..57060 +