MSTRG.12987.1.p1 (mRNA) -

Overview
NameMSTRG.12987.1.p1
Unique NameMSTRG.12987.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:12553..16441+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12987.1.p1 ID=MSTRG.12987.1.p1|Name=MSTRG.12987.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3889bp|location=Sequence derived from alignment at sc0000101_pilon:12553..16441+ (Clytia hemisphaerica_ch_hm2_pilon)
ggcacataccgtaccctccatttgcctaagtacccccccccccggagtaa
AAAACTGTCTTATCTGTATGTAGGGAaaagtgtagtggttatcatccttg
aaTTTCGTCTGGGAGGTCAAGGTTCGATCCTGGTGCTATGATTCACTttt
accttcgcccgggtcaacccatgccttgtgaggggaactgggtaccatta
ctctaatacaagagtatggggagtATACCAGGCGTAGCATGTGGTGTAGT
GACGATTGCTCTCTGAAAAAGTTTTAGTGATAATCCTTAATTTTAGAATG
TTATATTCTTTTATCTTTCCAGATGCCTGAGGTTTGCTTGAAAGACTGTC
AAGCATGGAGGGATGTCGGCCTCACGATGACTACTACAAGTAATGAGGCA
TGTAAATTATTTGATGATGTGATCACCCAATATATCACTTGGACGGAGAG
TCCTGATGGTATGGAAAATACCGTCGTAAAGCTACTTGAATCTGATTCTA
ATTTCATGATGGGTCAAGCTTTATCGATTGGGTTGGATATGATGGGAACT
GGTCGTGCACTTCATTTGGATAAGGAGTTAGCGGAACAAATTAATAAATT
TGAAAGTGATTTCAATAAGTCTGAGATTACACCAcgagaaaaattacact
gccaAAGTGTAGTGTATTTTGCTAAAGGTGAATACACGAAAGCCTGTGAA
TCTTGGGAAGAGATTTTGAAAGTCTATCCTAAGGACAGTTTAGCTATCAA
GTTCGCGCATGATAGTTATTTTTATCTGGGTGATTCGGTCAAGATTCGGG
ATAGTGTGGACAGAGTTTTACCATACTGGAAATCGAGTGATCCCTTATAT
GGTTATCTTAAAGGAATGCTCGCCTTTGGTTTAGAAGAAACATACCGATA
CGAAGAAGCTCAAAAAAGTAGCGAAGAAGCTCTCTCGTTAAACCCAACGG
ACTGTTGGGCTACGCATGCTAAAGCTCATTGTTTTGAAATGACAGGACGT
TTTAATCAAGGAATCGAGTTCTTAAAAGATACTGAGAATGATTGGGCTAA
AGGTCGAATGCTAGCCTGTCATAATTATTGGCATTGGGCGCTTTATCATA
TCGAACGAGGAGATTATGAAACAGCATTAGGAATCTATGATCATCAAGTT
GAAGAGAGAAGTAAGAGCTCGGGGGCTATGCTGGATATGGTCGATGCGGC
TTCCTTACTACAAAGATTCGAAATGCAAGGAGTCAACGTTGGTGATCGTT
GGAAAGAAATTTACGAGTTGGCTTTACCACATATTAATGATCATATCACT
GTGTTTAATGATTTTCATATGACGATGGCTTTCCTAGGGTGTGGGAAAAC
AGATGTTGCGTCCCGTTATATGAAATCGCTGAGAGATTACTGCGCTCATC
ATTCTAGCTACAGTCGAGATTTGTTTCATAAAATGGGTGTTGATCTTTGC
GATGGCTTAATAGCATTTTCTGAGGACCGATTTGTTGCAGCTGTTCAGTT
GTGGTACCCTTTgaaagatgacgtcatcggtaTGGGTGGAAGTCATGCAC
AACGAGATGTTTTTGATCAACTTTTGTTAAACGCTTGTATCGATTCCCCG
AAAAATGAAGACCGTGATTTAGCGCAACAAATGTTGAGTGAACgcaaaaa
gaagagagaaaattCTCCACTCACGGACAGGTTAATGCAGAAACTGCTTG
CGAAACATTAGTGATACGTTGATCAGCTAACATAATATACACTGAAATGT
ACGGGTCGTGTTAAAGACAACGGAGAACATATTTCACTTCTTTTACTTCT
TCGATTTTAGTTTCATTCATGAGACACCCCTGTCTTATTGAGCCAGTGTA
CTTCTTCGATTTTAccttattacacgtttttttttttattagaacctagt
ttataagaacatataggctgaaattcgtcgaaaaattaagaacatcttaa
gaacatgcccagcctcagtttggaaaaaaatggcgagaaactacaatttt
tccctctttttaaccgaatttaggggtggatcttcaaaagttgAGAGTcg
aatattgtccaaattttgccaaatttaagtgctctttattttgtatcata
ttgtcgatttagagtagtctgaaaaattaagaacgcattaaagaacattt
taggctgaaaattgctaaaaaaataagcacattcaggctcagccaaattt
taggtgttctaataaaaaaaaaaacgtgtacatgaaaataaatattgaag
tatttaacacgaattgaaaaatttcgtgttaataaaaacccccttaacta
aaaagcaaataaaatttgtgttaattttttgcgtgttaatttcaaggccg
ttaaatacttccatatttattttcatgtaataaggtagtttCATTCATGA
GACACCCATGTCTTATTGAGTCAGCTCAGTTGTTGTGAAATCAATCGGGG
tggctatgaaaaaaattaatttcaccGGGTTTGAATTTGAATCTTAGCTC
ACTGAGGGTGAGAGCTTTTAGCTGTTTCACCGGGGTGGggtaaatgtttt
cattttaaagcattCGAGAGTTGGTTTACCGAGAATTCACTTACTATTAA
TAtgcacttttttgtttttaccaGGTTGCCCTAATTTATGCAATTTTTGA
CCGGGGTAGGACAATAATTATTCAAGTTTTGATCggggggggAGTAGAGA
ACTTCAATAAATCTTTACCGTGGGTTACTGTACTCATTATCCCACCGGGC
CATaaaattgtataatttttgtcaattgttttcttcttcagtGGTTCATC
TCACCGGGTTACTGTTACATGGATGTCATGAGAAGGGTAATTTCTATCGC
CTCCTCTAAACAGATGACTTTGCTGGTCTGAGATTTGTAAACTAGCTGTA
GGATGAAAAAAGTAATGTTATGACCCACGATTTTTTATATTGTACAACAT
CAATGTCTTACGTAGTAAGAGTTTGGCCTGAACATATATACTAGAGGATT
GGCTTTTCTTTAGGAATCTTTCAAGGAAAACAGGTCGTACGAATTTTTTC
GTTTTCGAGGACTCGAAATCTAAGTTATcatagtatgaaccccccccccc
ttttttaagggggggggatccgagttttcaaggaaggctttatagggggg
atgggcaattttccagttaaaatggggggtttgagcttataggggggggt
caaataaaaatgggggggatagtaattttttggttaaaaaattactagtt
tactgtttatttgctagtgttttcaagttcattgaCTGTTGGTACGAATT
Cacactgaaaaatatatttcattcatcaaaattcttccccaatactggga
gtacaaattatatgctgggggctcggacccctgtaaatggtgcgggatca
aaaaattttaaaaatagggggatacctttatagggggggatgaaatatta
atgggggggttcagacccctctgcacactatggttATTATATGGGTTTTT
AATTTGAACTTGTATTTGTACACATCATATATTATATTCGCATTtcattt
ttgagagtttttaTCATCTGCAtctagtgaacaaaaaatattaaaaattt
ctccTCATATGCCACCTGTCAGCAAATTTGTAATtctcctgtgaaaatga
taattataccacatttctacaagaagttgattttttggacctaccccggt
ggggtgaaggtcctataaattcacctctgtccgttcgtccgtctgtccgt
tccttaccagcttttctcgagattgaatcataggaatcatttgatttttg
gtacaaaggtgcaaaacagtggtggccaaaatgtgacggagcccgatttt
cgaaaaaaaaattttttgggcaaatttgggccaaaaaac

Coding sequence (CDS) from alignment at sc0000101_pilon:12553..16441+

>MSTRG.12987.1.p1 ID=MSTRG.12987.1.p1|Name=MSTRG.12987.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1389bp|location=Sequence derived from alignment at sc0000101_pilon:12553..16441+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTGAGGTTTGCTTGAAAGACTGTCAAGCATGGAGGGATGTCGGCCT
CACGATGACTACTACAAGTAATGAGGCATGTAAATTATTTGATGATGTGA
TCACCCAATATATCACTTGGACGGAGAGTCCTGATGGTATGGAAAATACC
GTCGTAAAGCTACTTGAATCTGATTCTAATTTCATGATGGGTCAAGCTTT
ATCGATTGGGTTGGATATGATGGGAACTGGTCGTGCACTTCATTTGGATA
AGGAGTTAGCGGAACAAATTAATAAATTTGAAAGTGATTTCAATAAGTCT
GAGATTACACCAcgagaaaaattacactgccaAAGTGTAGTGTATTTTGC
TAAAGGTGAATACACGAAAGCCTGTGAATCTTGGGAAGAGATTTTGAAAG
TCTATCCTAAGGACAGTTTAGCTATCAAGTTCGCGCATGATAGTTATTTT
TATCTGGGTGATTCGGTCAAGATTCGGGATAGTGTGGACAGAGTTTTACC
ATACTGGAAATCGAGTGATCCCTTATATGGTTATCTTAAAGGAATGCTCG
CCTTTGGTTTAGAAGAAACATACCGATACGAAGAAGCTCAAAAAAGTAGC
GAAGAAGCTCTCTCGTTAAACCCAACGGACTGTTGGGCTACGCATGCTAA
AGCTCATTGTTTTGAAATGACAGGACGTTTTAATCAAGGAATCGAGTTCT
TAAAAGATACTGAGAATGATTGGGCTAAAGGTCGAATGCTAGCCTGTCAT
AATTATTGGCATTGGGCGCTTTATCATATCGAACGAGGAGATTATGAAAC
AGCATTAGGAATCTATGATCATCAAGTTGAAGAGAGAAGTAAGAGCTCGG
GGGCTATGCTGGATATGGTCGATGCGGCTTCCTTACTACAAAGATTCGAA
ATGCAAGGAGTCAACGTTGGTGATCGTTGGAAAGAAATTTACGAGTTGGC
TTTACCACATATTAATGATCATATCACTGTGTTTAATGATTTTCATATGA
CGATGGCTTTCCTAGGGTGTGGGAAAACAGATGTTGCGTCCCGTTATATG
AAATCGCTGAGAGATTACTGCGCTCATCATTCTAGCTACAGTCGAGATTT
GTTTCATAAAATGGGTGTTGATCTTTGCGATGGCTTAATAGCATTTTCTG
AGGACCGATTTGTTGCAGCTGTTCAGTTGTGGTACCCTTTgaaagatgac
gtcatcggtaTGGGTGGAAGTCATGCACAACGAGATGTTTTTGATCAACT
TTTGTTAAACGCTTGTATCGATTCCCCGAAAAATGAAGACCGTGATTTAG
CGCAACAAATGTTGAGTGAACgcaaaaagaagagagaaaattCTCCACTC
ACGGACAGGTTAATGCAGAAACTGCTTGCGAAACATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12987MSTRG.12987Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12987.1.p1.exon1MSTRG.12987.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12987.1.p1MSTRG.12987.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:12553..16441 +